pycom17g18230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000158
Physical Location & Seq
Forward (+)
15656545 .. 15657415
871 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18230.7

Sequence Viewer

Length: 594 bp
ATGGGTGACCCATCGGGAAGTTCTCGTGTGAGTTCCCAGAAACAAAACCGTGAGGGCGTGGTCGGGGCCCAAAGCGGACAATATCGTGCTACGGTGGTGGAGCGGGCCCGGGAAGTCGTCCCGCCCGGAATTTTTGAATTTATCCTTTTATCTGCAGGATATTTTCTCTTCTTCCAAATATGTTTTTGCGATTACAGTTTTTTTTTTTTGTTTGTTATGCAAACCTTTAATATTATTTCTTTTTCCAAATGGTTTTTTTTTATTCAAATATTTTTTTTTTGTGAAATTATATGTTTTTTTGCAGTTTTTTTAAATATAATTGTTGACGAATTATTATTAGGTACAATACATTATGTATATATATTATTTGAGGGTACGTTTAAATTTACAAAAATCATTAATTATATTTTTATTTTGATACGTTTTATTTTGTACACATTGTGTATTGGTACGTTTATATTATTCTCAATCCTATTTTCACTTAACGTACTAAAAGAAAAACTTATTTCGGTACAAAATATCTTAAATCCTAACCAACTTTTTTTTATACAATTATCTCTAATGGAGGAGAGTAATCAAAAGACTAGATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

23.05

Weight (kDa)

7.58

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 103
AciI CCGC 3 cut(s) 75, 103, 122
AcsI RAATTY 3 cut(s) 129, 137, 383
AdeI CACNNNGTG 1 cut(s) 441
AfaI GTAC 6 cut(s) 343, 376, 434, 451, 489, 513
AgsI TTSAA 2 cut(s) 137, 266
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 2 cut(s) 66, 105
ApaI GGGCCC 2 cut(s) 70, 109
ApoI RAATTY 3 cut(s) 129, 137, 383
AseI ATTAAT 1 cut(s) 399
AspS9I GGNCC 4 cut(s) 66, 67, 105, 106
AsuC2I CCSGG 3 cut(s) 109, 110, 126
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 108
BaeGI GKGCMC 2 cut(s) 70, 109
BanII GRGCYC 2 cut(s) 70, 109
BauI CACGAG 1 cut(s) 24
BccI CCATC 1 cut(s) 19
BcnI CCSGG 3 cut(s) 109, 110, 126
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 153
Bme1390I CCNGG 3 cut(s) 109, 110, 126
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 4 cut(s) 66, 67, 105, 106
BmiI GGNNCC 3 cut(s) 67, 68, 107
BmrFI CCNGG 3 cut(s) 109, 110, 126
BpuMI CCSGG 3 cut(s) 109, 110, 126
BsaJI CCNNGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 581
BseSI GKGCMC 2 cut(s) 70, 109
BshFI GGCC 2 cut(s) 68, 107
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 109, 126
BslFI GGGAC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 68, 107
BsoBI CYCGRG 1 cut(s) 108
Bsp120I GGGCCC 2 cut(s) 66, 105
Bsp1286I GDGCHC 2 cut(s) 70, 109
Bsp1407I TGTACA 1 cut(s) 432
BspACI CCGC 3 cut(s) 75, 103, 122
BspANI GGCC 2 cut(s) 68, 107
BspLI GGNNCC 3 cut(s) 67, 68, 107
BspMAI CTGCAG 1 cut(s) 157
BsrBI CCGCTC 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 108
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 50, 94, 197
Bst6I CTCTTC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 1 cut(s) 105
BstEII GGTNACC 1 cut(s) 5
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 3 cut(s) 107, 108, 124
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 2 cut(s) 70, 109
BsuRI GGCC 2 cut(s) 68, 107
Cac8I GCNNGC 1 cut(s) 105
Cfr13I GGNCC 4 cut(s) 66, 67, 105, 106
Cfr9I CCCGGG 1 cut(s) 108
Csp6I GTAC 6 cut(s) 342, 375, 433, 450, 488, 512
CviJI RGCY 2 cut(s) 68, 107
CviKI_1 RGCY 2 cut(s) 68, 107
CviQI GTAC 6 cut(s) 342, 375, 433, 450, 488, 512
DraI TTTAAA 2 cut(s) 312, 382
DraIII CACNNNGTG 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco24I GRGCYC 2 cut(s) 70, 109
Eco88I CYCGRG 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 5
EcoT38I GRGCYC 2 cut(s) 70, 109
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 1 cut(s) 104
FauI CCCGC 2 cut(s) 96, 129
FriOI GRGCYC 2 cut(s) 70, 109
FspBI CTAG 1 cut(s) 585
HaeIII GGCC 2 cut(s) 68, 107
HapII CCGG 2 cut(s) 109, 126
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HpaII CCGG 2 cut(s) 109, 126
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 325, 435
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 325, 435
HpyCH4III ACNGT 3 cut(s) 50, 94, 197
HpyCH4IV ACGT 4 cut(s) 377, 421, 452, 486
HpyCH4V TGCA 3 cut(s) 155, 220, 302
HpySE526I ACGT 4 cut(s) 377, 421, 452, 486
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 50, 122, 139, 141
MaeI CTAG 1 cut(s) 585
MaeII ACGT 4 cut(s) 377, 421, 452, 486
MaeIII GTNAC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 103
MboII GAAGA 2 cut(s) 160, 163
MhlI GDGCHC 2 cut(s) 70, 109
MluCI AATT 8 cut(s) 129, 137, 285, 318, 329, 383, 400, 551
MnlI CCTC 3 cut(s) 46, 364, 559
MseI TTAA 6 cut(s) 228, 311, 381, 399, 483, 524
MspI CCGG 2 cut(s) 109, 126
MspR9I CCNGG 3 cut(s) 109, 110, 126
NciI CCSGG 3 cut(s) 109, 110, 126
NlaIV GGNNCC 3 cut(s) 67, 68, 107
NmuCI GTSAC 1 cut(s) 5
PshBI ATTAAT 1 cut(s) 399
PspEI GGTNACC 1 cut(s) 5
PspN4I GGNNCC 3 cut(s) 67, 68, 107
PspOMI GGGCCC 2 cut(s) 66, 105
PspPI GGNCC 4 cut(s) 66, 67, 105, 106
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 6 cut(s) 343, 376, 434, 451, 489, 513
RsaNI GTAC 6 cut(s) 342, 375, 433, 450, 488, 512
SaqAI TTAA 6 cut(s) 228, 311, 381, 399, 483, 524
Sau96I GGNCC 4 cut(s) 66, 67, 105, 106
ScrFI CCNGG 3 cut(s) 109, 110, 126
SduI GDGCHC 2 cut(s) 70, 109
SetI ASST 6 cut(s) 227, 343, 380, 424, 455, 489
SfcI CTRYAG 1 cut(s) 153
SmaI CCCGGG 1 cut(s) 110
Sse9I AATT 8 cut(s) 129, 137, 285, 318, 329, 383, 400, 551
SsiI CCGC 3 cut(s) 75, 103, 122
SspI AATATT 2 cut(s) 232, 270
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 3 cut(s) 107, 108, 124
TaaI ACNGT 3 cut(s) 50, 94, 197
TaiI ACGT 4 cut(s) 380, 424, 455, 489
TasI AATT 8 cut(s) 129, 137, 285, 318, 329, 383, 400, 551
TatI WGTACW 1 cut(s) 432
Tru1I TTAA 6 cut(s) 228, 311, 381, 399, 483, 524
Tru9I TTAA 6 cut(s) 228, 311, 381, 399, 483, 524
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspMI CCCGGG 1 cut(s) 108
VspI ATTAAT 1 cut(s) 399
XapI RAATTY 3 cut(s) 129, 137, 383
XmaI CCCGGG 1 cut(s) 108
XspI CTAG 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.