pycom13g28430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
24255633 .. 24257191
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g28430.1

Sequence Viewer

Length: 1071 bp
ATGTGCTATCGTGTTGCGGTAGAGTCAAGACTGGGATGTGACAAAATGGTATCAGAGCCACTCTGCCGTGTAGTGCGACGTGCTACGGCGGAGTCCACAAGGCCTTTTAGAACAAGTTCGGGTGAGAGCATTCCTAGGATGGGTGACCCACTGGGAAATTCTCATATGAGTTCTTTGAAACAAAACCGTGAGGGTGTGGTTGGGGCCCAAAGCGAACAATATCGTGCTACGGCGGAGTCAAGGTCGGGATGTGACTGGTTAACTGTCTGGTTCTATGCTAACTTCATACCTAATCACCCCCTGACAACCCTTTCAGGCTTATCCAACTTGAATGTGGGACATGGCACTCCTTATACTCACTTCGTTCTGAAAGAATGCTTTTTCTTTTTTAGCTTTAAGGATATTCAAGAGAACTATTACCATATTGAAACCAATGTAGAAAATGGAGTAAAATTCCTTAGCACTACCTACGAATATAGCCAGAAGCATATTTTAGAAAAGATGGAACTCTTAATGAGTGGATTACACCCATTTAGGCTTTCGTTGGGGATGTACGTGACACTCCCCGGCCCAGGATGTCCACTAGGACTCCGAATCGAGCTGTGTTGGCCGACACCTGGAAGAAATTTAAACCTAAAAGTGGCTAAGTACAAGAGTGTTGACAATTATACCATCGATGGTAATCGTCTACCCCAAGATTTGTCGATAATCCTTGTTGGTACGAAAACTCTGCTACTAGAACCTGGAAGGGCGAAAAACAAGGGTGACGTTATAACCCCTCATCGTAAAACCTGTATTAGGTGCAGTAAAAACAGAAGCATGGCATGCCACAATATCTCAGCAATAATAAATTCATCTAATGTGACTTGTACAACTGGACTTATTGCTCATCAGTCTATGCTAGCACACGAGTCGAAGTCACCTAATGTGACCTGTACGATAAGCTGGGTCGCTATGCGCAGGTCACCTACGAGTCGGAGTCACCTAATGCGAGTGTGCGGTGTGGGAGGTGAACAATCACGTGAATGCTGTGCCTTGGCCCAGGGCGTGAGCACTAACACCGGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

39.56

Weight (kDa)

9.14

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 773
Acc16I TGCGCA 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 951
AccI GTMKAC 1 cut(s) 688
AciI CCGC 4 cut(s) 17, 89, 233, 999
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 4 cut(s) 157, 452, 625, 850
AcvI CACGTG 1 cut(s) 1022
AfaI GTAC 5 cut(s) 554, 650, 721, 871, 937
AfiI CCNNNNNNNGG 5 cut(s) 140, 572, 617, 640, 798
AgsI TTSAA 4 cut(s) 178, 331, 407, 428
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 4 cut(s) 571, 616, 742, 1041
AluBI AGCT 3 cut(s) 393, 601, 945
AluI AGCT 3 cut(s) 393, 601, 945
Alw21I GWGCWC 1 cut(s) 1055
AoxI GGCC 5 cut(s) 101, 204, 568, 608, 1038
ApaI GGGCCC 1 cut(s) 208
ApoI RAATTY 4 cut(s) 157, 452, 625, 850
Asp700I GAANNNNTTC 1 cut(s) 115
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 1 cut(s) 960
AspS9I GGNCC 4 cut(s) 204, 205, 569, 1039
AsuC2I CCSGG 2 cut(s) 567, 1063
AsuHPI GGTGA 8 cut(s) 134, 155, 287, 776, 912, 957, 974, 1022
AsuNHI GCTAGC 1 cut(s) 901
AvrII CCTAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 208
BauI CACGAG 1 cut(s) 908
BbrPI CACGTG 1 cut(s) 1022
Bbv12I GWGCWC 1 cut(s) 1055
BccI CCATC 4 cut(s) 133, 496, 671, 680
BceAI ACGGC 3 cut(s) 51, 102, 246
BcgI CGANNNNNNTGC 4 cut(s) 712, 746, 894, 928
BciT130I CCWGG 4 cut(s) 573, 618, 744, 1043
BcnI CCSGG 2 cut(s) 567, 1063
BfaI CTAG 4 cut(s) 135, 584, 737, 902
BfuAI ACCTGC 1 cut(s) 951
BlnI CCTAGG 1 cut(s) 134
Bme1390I CCNGG 6 cut(s) 567, 573, 618, 744, 1043, 1063
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 4 cut(s) 204, 205, 569, 1039
BmiI GGNNCC 2 cut(s) 205, 206
BmrFI CCNGG 6 cut(s) 567, 573, 618, 744, 1043, 1063
BmrI ACTGGG 2 cut(s) 41, 161
BmtI GCTAGC 1 cut(s) 905
BmuI ACTGGG 2 cut(s) 41, 161
Bpu10I CCTNAGC 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 567, 1063
Bsa29I ATCGAT 1 cut(s) 675
BsaAI YACGTR 2 cut(s) 556, 1022
BsaBI GATNNNNATC 1 cut(s) 681
BsaJI CCNNGG 6 cut(s) 134, 565, 571, 1035, 1041, 1042
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 573, 603
Bsc4I CCNNNNNNNGG 5 cut(s) 140, 572, 617, 640, 798
Bse1I ACTGG 4 cut(s) 36, 156, 260, 880
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 4 cut(s) 573, 618, 744, 1043
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 6 cut(s) 134, 565, 571, 1035, 1041, 1042
BseGI GGATG 5 cut(s) 41, 144, 254, 555, 581
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 5 cut(s) 140, 572, 617, 640, 798
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 4 cut(s) 36, 156, 260, 880
BseSI GKGCMC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 945
BsgI GTGCAG 1 cut(s) 823
BshFI GGCC 5 cut(s) 103, 206, 570, 610, 1040
BshVI ATCGAT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 1055
BsiSI CCGG 2 cut(s) 567, 1062
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 5 cut(s) 140, 572, 617, 640, 798
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 3 cut(s) 129, 380, 1031
BsnI GGCC 5 cut(s) 103, 206, 570, 610, 1040
Bsp120I GGGCCC 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 208, 1055
Bsp1407I TGTACA 1 cut(s) 869
BspACI CCGC 4 cut(s) 17, 89, 233, 999
BspANI GGCC 5 cut(s) 103, 206, 570, 610, 1040
BspCNI CTCAG 1 cut(s) 851
BspDI ATCGAT 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 205, 206
BspMI ACCTGC 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 905
BsrGI TGTACA 1 cut(s) 869
BsrI ACTGG 4 cut(s) 36, 156, 260, 880
BssECI CCNNGG 6 cut(s) 134, 565, 571, 1035, 1041, 1042
BssSI CACGAG 1 cut(s) 908
BssT1I CCWWGG 2 cut(s) 134, 1035
Bst2BI CACGAG 1 cut(s) 908
Bst2UI CCWGG 4 cut(s) 573, 618, 744, 1043
Bst4CI ACNGT 2 cut(s) 188, 265
BstAPI GCANNNNNTGC 1 cut(s) 825
BstAUI TGTACA 1 cut(s) 869
BstBAI YACGTR 2 cut(s) 556, 1022
BstC8I GCNNGC 2 cut(s) 826, 903
BstDEI CTNAG 3 cut(s) 458, 645, 838
BstEII GGTNACC 2 cut(s) 143, 963
BstENI CCTNNNNNAGG 1 cut(s) 796
BstF5I GGATG 5 cut(s) 41, 144, 254, 555, 581
BstHHI GCGC 1 cut(s) 960
BstMWI GCNNNNNNNGC 2 cut(s) 607, 825
BstNI CCWGG 4 cut(s) 573, 618, 744, 1043
BstNSI RCATGY 1 cut(s) 828
BstPI GGTNACC 2 cut(s) 143, 963
BstSCI CCNGG 6 cut(s) 565, 571, 616, 742, 1041, 1061
BstSLI GKGCMC 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 5 cut(s) 103, 206, 570, 610, 1040
BsuTUI ATCGAT 1 cut(s) 675
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 5 cut(s) 41, 144, 254, 555, 581
BtsIMutI CAGTG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 951
Cac8I GCNNGC 2 cut(s) 826, 903
CfoI GCGC 1 cut(s) 960
Cfr13I GGNCC 4 cut(s) 204, 205, 569, 1039
ClaI ATCGAT 1 cut(s) 675
Csp6I GTAC 5 cut(s) 553, 649, 720, 870, 936
CviAII CATG 3 cut(s) 341, 820, 825
CviQI GTAC 5 cut(s) 553, 649, 720, 870, 936
DdeI CTNAG 3 cut(s) 458, 645, 838
DraI TTTAAA 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 608
EciI GGCGGA 2 cut(s) 104, 248
Eco130I CCWWGG 2 cut(s) 134, 1035
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 1022
Eco91I GGTNACC 2 cut(s) 143, 963
EcoNI CCTNNNNNAGG 1 cut(s) 796
EcoO109I RGGNCCY 1 cut(s) 204
EcoO65I GGTNACC 2 cut(s) 143, 963
EcoRII CCWGG 4 cut(s) 571, 616, 742, 1041
EcoT14I CCWWGG 2 cut(s) 134, 1035
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 2 cut(s) 134, 1035
FaeI CATG 3 cut(s) 344, 823, 828
FaqI GGGAC 1 cut(s) 351
FatI CATG 3 cut(s) 340, 819, 824
FauNDI CATATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 688
FokI GGATG 5 cut(s) 48, 151, 261, 562, 588
FriOI GRGCYC 1 cut(s) 208
FspBI CTAG 4 cut(s) 135, 584, 737, 902
FspI TGCGCA 1 cut(s) 959
GlaI GCGC 1 cut(s) 959
GsaI CCCAGC 1 cut(s) 949
HaeIII GGCC 5 cut(s) 103, 206, 570, 610, 1040
HapII CCGG 2 cut(s) 567, 1062
HhaI GCGC 1 cut(s) 960
Hin1II CATG 3 cut(s) 344, 823, 828
Hin6I GCGC 1 cut(s) 958
HinP1I GCGC 1 cut(s) 958
HincII GTYRAC 2 cut(s) 261, 661
HindII GTYRAC 2 cut(s) 261, 661
HinfI GANTC 8 cut(s) 23, 92, 236, 588, 594, 911, 973, 979
HpaI GTTAAC 1 cut(s) 261
HpaII CCGG 2 cut(s) 567, 1062
HphI GGTGA 8 cut(s) 134, 155, 287, 776, 912, 957, 974, 1022
Hpy166II GTNNAC 6 cut(s) 96, 261, 581, 661, 689, 1013
Hpy188I TCNGA 4 cut(s) 55, 369, 593, 978
Hpy188III TCNNGA 3 cut(s) 27, 246, 407
Hpy8I GTNNAC 6 cut(s) 96, 261, 581, 661, 689, 1013
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 741
HpyCH4III ACNGT 2 cut(s) 188, 265
HpyCH4IV ACGT 4 cut(s) 79, 555, 768, 1021
HpyCH4V TGCA 1 cut(s) 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 607, 825
HpyF3I CTNAG 3 cut(s) 458, 645, 838
HpySE526I ACGT 4 cut(s) 79, 555, 768, 1021
Hsp92II CATG 3 cut(s) 344, 823, 828
HspAI GCGC 1 cut(s) 958
KspAI GTTAAC 1 cut(s) 261
MaeI CTAG 4 cut(s) 135, 584, 737, 902
MaeII ACGT 4 cut(s) 79, 555, 768, 1021
MboII GAAGA 1 cut(s) 633
MhlI GDGCHC 2 cut(s) 208, 1055
MluCI AATT 5 cut(s) 157, 452, 625, 664, 850
MlyI GAGTC 7 cut(s) 32, 101, 245, 582, 920, 982, 988
MmeI TCCRAC 2 cut(s) 348, 956
MnlI CCTC 3 cut(s) 184, 789, 1001
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 4 cut(s) 260, 396, 512, 629
MslI CAYNNNNRTG 1 cut(s) 1024
MspI CCGG 2 cut(s) 567, 1062
MspR9I CCNGG 6 cut(s) 567, 573, 618, 744, 1043, 1063
Mva1269I GAATGC 3 cut(s) 129, 380, 1031
MvaI CCWGG 4 cut(s) 573, 618, 744, 1043
MwoI GCNNNNNNNGC 2 cut(s) 607, 825
NciI CCSGG 2 cut(s) 567, 1063
NdeI CATATG 1 cut(s) 165
NheI GCTAGC 1 cut(s) 901
NlaIII CATG 3 cut(s) 344, 823, 828
NlaIV GGNNCC 2 cut(s) 205, 206
NsbI TGCGCA 1 cut(s) 959
NspI RCATGY 1 cut(s) 828
PaeI GCATGC 1 cut(s) 828
PasI CCCWGGG 1 cut(s) 1042
PceI AGGCCT 1 cut(s) 103
PctI GAATGC 3 cut(s) 129, 380, 1031
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 1 cut(s) 594
PleI GAGTC 7 cut(s) 31, 100, 244, 582, 919, 981, 987
PmaCI CACGTG 1 cut(s) 1022
PmlI CACGTG 1 cut(s) 1022
PpsI GAGTC 7 cut(s) 31, 100, 244, 582, 919, 981, 987
Ppu21I YACGTR 2 cut(s) 556, 1022
PsiI TTATAA 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 571, 616, 742, 1041
PspCI CACGTG 1 cut(s) 1022
PspEI GGTNACC 2 cut(s) 143, 963
PspFI CCCAGC 1 cut(s) 945
PspGI CCWGG 4 cut(s) 571, 616, 742, 1041
PspN4I GGNNCC 2 cut(s) 205, 206
PspOMI GGGCCC 1 cut(s) 204
PspPI GGNCC 4 cut(s) 204, 205, 569, 1039
RsaI GTAC 5 cut(s) 554, 650, 721, 871, 937
RsaNI GTAC 5 cut(s) 553, 649, 720, 870, 936
RseI CAYNNNNRTG 1 cut(s) 1024
SaqAI TTAA 4 cut(s) 260, 396, 512, 629
Sau96I GGNCC 4 cut(s) 204, 205, 569, 1039
SchI GAGTC 7 cut(s) 32, 101, 245, 582, 920, 982, 988
ScrFI CCNGG 6 cut(s) 567, 573, 618, 744, 1043, 1063
SduI GDGCHC 2 cut(s) 208, 1055
SmiMI CAYNNNNRTG 1 cut(s) 1024
SphI GCATGC 1 cut(s) 828
Sse9I AATT 5 cut(s) 157, 452, 625, 664, 850
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 4 cut(s) 17, 89, 233, 999
SspMI CTAG 4 cut(s) 135, 584, 737, 902
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 6 cut(s) 565, 571, 616, 742, 1041, 1061
StyI CCWWGG 2 cut(s) 134, 1035
TaaI ACNGT 2 cut(s) 188, 265
TaiI ACGT 4 cut(s) 82, 558, 771, 1024
TaqI TCGA 4 cut(s) 597, 675, 704, 914
TasI AATT 5 cut(s) 157, 452, 625, 664, 850
TatI WGTACW 2 cut(s) 648, 869
TfiI GAWTC 1 cut(s) 594
Tru1I TTAA 4 cut(s) 260, 396, 512, 629
Tru9I TTAA 4 cut(s) 260, 396, 512, 629
TscAI CASTG 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 274, 843
TspRI CASTG 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 796
XapI RAATTY 4 cut(s) 157, 452, 625, 850
XceI RCATGY 1 cut(s) 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 688
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 4 cut(s) 135, 584, 737, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.