pycom02g26210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000158
Physical Location & Seq
Reverse (-)
24049159 .. 24050136
978 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26210.2

Sequence Viewer

Length: 342 bp
ATGTTCAGCACTGTCACATCCCGGTCCGGGGGGAACCACTTCCCGGGCCCGCTCCACCACCGTAGCACGATATTGTCCGCTTTGGGCCCCGACCACGCCCTCACGGTTTTGTTTCTGGGAACTCACACGAGAACTTCCCGATGGGTCACCCATCCTGGAAGTGCTCTCGCGCGCTACTCGCTTAACTTCGGAGTTCCCATGGAACCCGAAGCCAATGAGCTCCCAAAAGGCCTCGTGCTAGGTAGGGATGAGAATATACATTTAAGGATCACTCCCCTGGGCGATGTGGGATGTCACAAAGACAATGGCAGTTTATATCTCTTGCTCAAAGGTGTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.24

Weight (kDa)

9.03

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 52
AccII CGCG 2 cut(s) 170, 172
AciI CCGC 2 cut(s) 50, 78
AclWI GGATC 1 cut(s) 275
AfiI CCNNNNNNNGG 3 cut(s) 27, 28, 43
AjnI CCWGG 2 cut(s) 154, 276
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 2 cut(s) 166, 222
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 3 cut(s) 46, 85, 229
ApaI GGGCCC 2 cut(s) 50, 89
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 172, 174
AspS9I GGNCC 5 cut(s) 24, 46, 47, 85, 86
AsuC2I CCSGG 4 cut(s) 22, 28, 44, 45
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 24
BaeGI GKGCMC 2 cut(s) 50, 89
BanII GRGCYC 3 cut(s) 50, 89, 222
BauI CACGAG 2 cut(s) 127, 233
Bbv12I GWGCWC 2 cut(s) 166, 222
BccI CCATC 2 cut(s) 135, 159
BciT130I CCWGG 2 cut(s) 156, 278
BcnI CCSGG 4 cut(s) 22, 28, 44, 45
BfaI CTAG 1 cut(s) 239
Bme1390I CCNGG 6 cut(s) 22, 28, 44, 45, 156, 278
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 5 cut(s) 24, 46, 47, 85, 86
BmiI GGNNCC 5 cut(s) 35, 48, 87, 88, 204
BmrFI CCNGG 6 cut(s) 22, 28, 44, 45, 156, 278
BpuMI CCSGG 4 cut(s) 22, 28, 44, 45
BsaJI CCNNGG 5 cut(s) 27, 43, 198, 276, 277
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 28, 43
BseBI CCWGG 2 cut(s) 156, 278
BseDI CCNNGG 5 cut(s) 27, 43, 198, 276, 277
BseGI GGATG 4 cut(s) 17, 151, 253, 296
BseLI CCNNNNNNNGG 3 cut(s) 27, 28, 43
BsePI GCGCGC 1 cut(s) 170
BseSI GKGCMC 2 cut(s) 50, 89
Bsh1236I CGCG 2 cut(s) 170, 172
BshFI GGCC 3 cut(s) 48, 87, 231
BsiHKAI GWGCWC 2 cut(s) 166, 222
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 3 cut(s) 22, 27, 44
BslI CCNNNNNNNGG 3 cut(s) 27, 28, 43
BsnI GGCC 3 cut(s) 48, 87, 231
BsoBI CYCGRG 1 cut(s) 43
Bsp120I GGGCCC 2 cut(s) 46, 85
Bsp1286I GDGCHC 4 cut(s) 50, 89, 166, 222
Bsp143I GATC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 50, 78
BspANI GGCC 3 cut(s) 48, 87, 231
BspFNI CGCG 2 cut(s) 170, 172
BspLI GGNNCC 5 cut(s) 35, 48, 87, 88, 204
BspPI GGATC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 52
BssECI CCNNGG 5 cut(s) 27, 43, 198, 276, 277
BssHII GCGCGC 1 cut(s) 170
BssMI GATC 1 cut(s) 267
BssSI CACGAG 2 cut(s) 127, 233
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 2 cut(s) 127, 233
Bst2UI CCWGG 2 cut(s) 156, 278
Bst4CI ACNGT 3 cut(s) 13, 62, 106
BstC8I GCNNGC 2 cut(s) 50, 172
BstDSI CCRYGG 1 cut(s) 198
BstEII GGTNACC 1 cut(s) 145
BstF5I GGATG 4 cut(s) 17, 151, 253, 296
BstFNI CGCG 2 cut(s) 170, 172
BstHHI GCGC 2 cut(s) 172, 174
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 156, 278
BstPI GGTNACC 1 cut(s) 145
BstSCI CCNGG 6 cut(s) 20, 26, 42, 43, 154, 276
BstSLI GKGCMC 2 cut(s) 50, 89
BstUI CGCG 2 cut(s) 170, 172
BsuRI GGCC 3 cut(s) 48, 87, 231
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 4 cut(s) 17, 151, 253, 296
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 50, 172
CfoI GCGC 2 cut(s) 172, 174
Cfr13I GGNCC 5 cut(s) 24, 46, 47, 85, 86
Cfr9I CCCGGG 1 cut(s) 43
CpoI CGGWCCG 1 cut(s) 24
CspI CGGWCCG 1 cut(s) 24
CviAII CATG 1 cut(s) 199
CviJI RGCY 5 cut(s) 48, 87, 212, 220, 231
CviKI_1 RGCY 5 cut(s) 48, 87, 212, 220, 231
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 3 cut(s) 50, 89, 222
Eco47I GGWCC 1 cut(s) 24
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 154, 276
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 3 cut(s) 50, 89, 222
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 200, 257, 316, 340
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 57
FokI GGATG 4 cut(s) 4, 138, 260, 303
FriOI GRGCYC 3 cut(s) 50, 89, 222
FspBI CTAG 1 cut(s) 239
GlaI GCGC 2 cut(s) 171, 173
HaeIII GGCC 3 cut(s) 48, 87, 231
HapII CCGG 3 cut(s) 22, 27, 44
HhaI GCGC 2 cut(s) 172, 174
Hin1II CATG 1 cut(s) 202
Hin6I GCGC 2 cut(s) 170, 172
HinP1I GCGC 2 cut(s) 170, 172
HpaII CCGG 3 cut(s) 22, 27, 44
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 138
HpyCH4III ACNGT 3 cut(s) 13, 62, 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
Hsp92II CATG 1 cut(s) 202
HspAI GCGC 2 cut(s) 170, 172
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 2 cut(s) 57, 225
LpnPI CCDG 8 cut(s) 35, 40, 57, 101, 141, 168, 263, 290
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 3 cut(s) 13, 145, 293
MalI GATC 1 cut(s) 269
MbiI CCGCTC 1 cut(s) 52
MboI GATC 1 cut(s) 267
MhlI GDGCHC 4 cut(s) 50, 89, 166, 222
MnlI CCTC 2 cut(s) 110, 242
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 2 cut(s) 183, 263
MspI CCGG 3 cut(s) 22, 27, 44
MspR9I CCNGG 6 cut(s) 22, 28, 44, 45, 156, 278
MvaI CCWGG 2 cut(s) 156, 278
MvnI CGCG 2 cut(s) 170, 172
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 4 cut(s) 22, 28, 44, 45
NcoI CCATGG 1 cut(s) 198
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 5 cut(s) 35, 48, 87, 88, 204
NmuCI GTSAC 3 cut(s) 13, 145, 293
PasI CCCWGGG 1 cut(s) 277
PauI GCGCGC 1 cut(s) 170
PceI AGGCCT 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 38
PfoI TCCNGGA 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 154, 276
PspEI GGTNACC 1 cut(s) 145
PspGI CCWGG 2 cut(s) 154, 276
PspN4I GGNNCC 5 cut(s) 35, 48, 87, 88, 204
PspOMI GGGCCC 2 cut(s) 46, 85
PspPI GGNCC 5 cut(s) 24, 46, 47, 85, 86
PteI GCGCGC 1 cut(s) 170
Rsr2I CGGWCCG 1 cut(s) 24
RsrII CGGWCCG 1 cut(s) 24
SacI GAGCTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 183, 263
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 5 cut(s) 24, 46, 47, 85, 86
ScrFI CCNGG 6 cut(s) 22, 28, 44, 45, 156, 278
SduI GDGCHC 4 cut(s) 50, 89, 166, 222
SetI ASST 3 cut(s) 222, 244, 334
SinI GGWCC 1 cut(s) 24
SmaI CCCGGG 1 cut(s) 45
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 2 cut(s) 50, 78
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 222
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 6 cut(s) 20, 26, 42, 43, 154, 276
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 13, 62, 106
Tru1I TTAA 2 cut(s) 183, 263
Tru9I TTAA 2 cut(s) 183, 263
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 3 cut(s) 13, 145, 293
Tsp45I GTSAC 3 cut(s) 13, 145, 293
TspMI CCCGGG 1 cut(s) 43
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 24
XmaI CCCGGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.