pycom02g18450

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
16633360 .. 16634736
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18450.5

Sequence Viewer

Length: 987 bp
ATGATTCTGGATCCTCTAAGTTTTATATGTATATTCTCATCTCTACCTAACACGAGGTCTTTTAGGACGAGTTCGCACGAGAGCAATCCCAGGATGGCTGACCCATTGGGAAGTTCTCATGTGAGTTCCCAGAAACAAAACCGTGAGGGCGTGGTCGGGGCCCAAAGCGGACAATATCATGCTACGGTGGATTCGAGCCCGGGATGTGATGGGGGCCCGAGCCGGGATGTGACACATAACTCCTTAATTTGGTCCTTAACAATTAATGATAATCAATATTTTTTTTGTGAAAAATTTGTCAAAATTAACTTTAAAAACTATTTTATATTTAAAACTAAAAATGATATTAGTAAGAAAAAAGGCGTTGAATGCATGATTGAAATTTTGCTGCTCCCACTTGCGGTAACCGCGACGGCACCCAATGTTGGTGATGAGGGGGTTGAAGGGGATAGGGTTGTGGTGGTGGAGTGTAGAAGCGAAGGTGAAGTTGGATCAGATCTTAAGGCGACAGTAGCTAAAAACCTTTTAATTTATTTAATTGTTAAATTTGAGGGTATTTGTGTCTATTTAAGTAAAATTTTGTATATATTTGAAGTTTTGACAATATTTGATAAATACATTCTCATAAAAATCTTAAAGACAAAGACAAACACAATAACCAGCAGGCAACCAAAGTTTGCTTCTTCACTGCTTTCTCCGGCCACTCTCCGGTTCAATTTTAATGTTTTTGTTTTGGTTGGACAGACAAGTTCAGAGTGGAGTGAGAGCGCTAATGAAGATATTTTAGGAATAAAAATTATAACAAAAGATGGAGAAAAAGAAAAAGAGGCAAACATCTTAGGGCAAGATCCATCTAAAACTAAGAGTGCAACTTGGGGTTTGATTGACCATCCATCCTGTCCAACCCGCTGCACCCCTAAACCGTATACATTTTATTCAGTGCTGTTTCCTTTCCATTTATGTATATGCCATAACCGACACCATTAG

Protein Analysis

329

Amino Acids

36.6

Weight (kDa)

8.25

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 926
AccII CGCG 1 cut(s) 410
AciI CCGC 4 cut(s) 168, 401, 408, 907
AclWI GGATC 4 cut(s) 5, 18, 499, 842
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 4 cut(s) 293, 381, 545, 576
AfeI AGCGCT 1 cut(s) 769
AfiI CCNNNNNNNGG 5 cut(s) 223, 249, 400, 425, 708
AflII CTTAAG 1 cut(s) 500
AgsI TTSAA 5 cut(s) 368, 380, 443, 593, 715
AjnI CCWGG 1 cut(s) 89
AjuI GAANNNNNNNTTGG 4 cut(s) 471, 503, 664, 696
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
AlwI GGATC 4 cut(s) 5, 18, 499, 842
Ama87I CYCGRG 2 cut(s) 199, 217
Aor51HI AGCGCT 1 cut(s) 769
AoxI GGCC 3 cut(s) 159, 214, 699
ApaI GGGCCC 2 cut(s) 163, 218
ApeKI GCWGC 2 cut(s) 388, 909
ApoI RAATTY 4 cut(s) 293, 381, 545, 576
AseI ATTAAT 1 cut(s) 264
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 5 cut(s) 159, 160, 214, 215, 252
AsuC2I CCSGG 3 cut(s) 200, 201, 224
AsuHPI GGTGA 2 cut(s) 440, 494
AvaI CYCGRG 2 cut(s) 199, 217
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 2 cut(s) 163, 218
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 3 cut(s) 163, 200, 218
BauI CACGAG 2 cut(s) 52, 77
BbvI GCAGC 2 cut(s) 375, 896
BccI CCATC 6 cut(s) 88, 203, 803, 859, 897, 901
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 3 cut(s) 200, 201, 224
BfoI RGCGCY 1 cut(s) 771
BfrI CTTAAG 1 cut(s) 500
BglII AGATCT 1 cut(s) 496
BisI GCNGC 2 cut(s) 389, 910
BlsI GCNGC 2 cut(s) 390, 911
Bme1390I CCNGG 4 cut(s) 91, 200, 201, 224
Bme18I GGWCC 1 cut(s) 252
BmeT110I CYCGRG 2 cut(s) 199, 217
BmgT120I GGNCC 5 cut(s) 159, 160, 214, 215, 252
BmiI GGNNCC 6 cut(s) 12, 160, 161, 215, 216, 417
BmrFI CCNGG 4 cut(s) 91, 200, 201, 224
BpuMI CCSGG 3 cut(s) 200, 201, 224
BsaJI CCNNGG 2 cut(s) 89, 199
BsaWI WCCGGW 1 cut(s) 708
Bsc4I CCNNNNNNNGG 5 cut(s) 223, 249, 400, 425, 708
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 89, 199
BseGI GGATG 5 cut(s) 99, 209, 232, 889, 893
BseLI CCNNNNNNNGG 5 cut(s) 223, 249, 400, 425, 708
BseSI GKGCMC 2 cut(s) 163, 218
BseXI GCAGC 2 cut(s) 375, 896
BsgI GTGCAG 1 cut(s) 895
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 3 cut(s) 161, 216, 701
BshNI GGYRCC 1 cut(s) 415
BsiHKCI CYCGRG 2 cut(s) 199, 217
BsiSI CCGG 4 cut(s) 200, 223, 698, 709
BslI CCNNNNNNNGG 5 cut(s) 223, 249, 400, 425, 708
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 3 cut(s) 161, 216, 701
BsoBI CYCGRG 2 cut(s) 199, 217
Bsp120I GGGCCC 2 cut(s) 159, 214
Bsp1286I GDGCHC 3 cut(s) 163, 200, 218
Bsp143I GATC 4 cut(s) 10, 491, 496, 847
BspACI CCGC 4 cut(s) 168, 401, 408, 907
BspANI GGCC 3 cut(s) 161, 216, 701
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 6 cut(s) 12, 160, 161, 215, 216, 417
BspPI GGATC 4 cut(s) 5, 18, 499, 842
BspT107I GGYRCC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 89, 199
BssMI GATC 4 cut(s) 10, 491, 496, 847
BssNAI GTATAC 1 cut(s) 927
BssSI CACGAG 2 cut(s) 52, 77
Bst1107I GTATAC 1 cut(s) 927
Bst2BI CACGAG 2 cut(s) 52, 77
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 4 cut(s) 143, 187, 511, 924
BstAFI CTTAAG 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 665
BstDEI CTNAG 3 cut(s) 17, 838, 861
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 5 cut(s) 99, 209, 232, 889, 893
BstFNI CGCG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 771
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 4 cut(s) 13, 494, 499, 850
BstMBI GATC 4 cut(s) 10, 491, 496, 847
BstMWI GCNNNNNNNGC 3 cut(s) 369, 407, 512
BstNI CCWGG 1 cut(s) 91
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 4 cut(s) 89, 198, 199, 222
BstSLI GKGCMC 2 cut(s) 163, 218
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 375, 896
BstX2I RGATCY 3 cut(s) 10, 496, 847
BstYI RGATCY 3 cut(s) 10, 496, 847
BstZ17I GTATAC 1 cut(s) 927
BsuRI GGCC 3 cut(s) 161, 216, 701
BtsCI GGATG 5 cut(s) 99, 209, 232, 889, 893
BtsI GCAGTG 1 cut(s) 686
BtsIMutI CAGTG 2 cut(s) 686, 945
Cac8I GCNNGC 1 cut(s) 665
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 5 cut(s) 159, 160, 214, 215, 252
Cfr9I CCCGGG 1 cut(s) 199
CviAII CATG 3 cut(s) 119, 179, 373
CviJI RGCY 7 cut(s) 98, 161, 198, 216, 222, 515, 701
CviKI_1 RGCY 7 cut(s) 98, 161, 198, 216, 222, 515, 701
DdeI CTNAG 3 cut(s) 17, 838, 861
DpnI GATC 4 cut(s) 12, 493, 498, 849
DpnII GATC 4 cut(s) 10, 491, 496, 847
DraI TTTAAA 2 cut(s) 313, 331
EaeI YGGCCR 1 cut(s) 699
Eco24I GRGCYC 3 cut(s) 163, 200, 218
Eco47I GGWCC 1 cut(s) 252
Eco47III AGCGCT 1 cut(s) 769
Eco88I CYCGRG 2 cut(s) 199, 217
Eco91I GGTNACC 1 cut(s) 403
EcoO109I RGGNCCY 2 cut(s) 159, 214
EcoO65I GGTNACC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 89
EcoT22I ATGCAT 1 cut(s) 374
EcoT38I GRGCYC 3 cut(s) 163, 200, 218
FaeI CATG 3 cut(s) 122, 182, 376
FatI CATG 3 cut(s) 118, 178, 372
FauI CCCGC 1 cut(s) 914
FblI GTMKAC 1 cut(s) 926
Fnu4HI GCNGC 2 cut(s) 389, 910
FokI GGATG 5 cut(s) 106, 216, 239, 876, 880
FriOI GRGCYC 3 cut(s) 163, 200, 218
Fsp4HI GCNGC 2 cut(s) 389, 910
GlaI GCGC 1 cut(s) 769
GluI GCNGC 2 cut(s) 389, 910
HaeII RGCGCY 1 cut(s) 771
HaeIII GGCC 3 cut(s) 161, 216, 701
HapII CCGG 4 cut(s) 200, 223, 698, 709
HhaI GCGC 1 cut(s) 770
Hin1II CATG 3 cut(s) 122, 182, 376
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HinfI GANTC 2 cut(s) 4, 191
HpaII CCGG 4 cut(s) 200, 223, 698, 709
HphI GGTGA 2 cut(s) 440, 494
Hpy166II GTNNAC 1 cut(s) 927
Hpy188I TCNGA 2 cut(s) 496, 754
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 927
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 2 cut(s) 437, 473
HpyCH4III ACNGT 4 cut(s) 143, 187, 511, 924
HpyCH4V TGCA 3 cut(s) 372, 869, 912
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 407, 512
HpyF3I CTNAG 3 cut(s) 17, 838, 861
Hsp92II CATG 3 cut(s) 122, 182, 376
HspAI GCGC 1 cut(s) 768
Kzo9I GATC 4 cut(s) 10, 491, 496, 847
LmnI GCTCC 1 cut(s) 396
Lsp1109I GCAGC 2 cut(s) 375, 896
MaeIII GTNAC 2 cut(s) 229, 403
MalI GATC 4 cut(s) 12, 493, 498, 849
MboI GATC 4 cut(s) 10, 491, 496, 847
MboII GAAGA 2 cut(s) 675, 788
MflI RGATCY 3 cut(s) 10, 496, 847
MhlI GDGCHC 3 cut(s) 163, 200, 218
MmeI TCCRAC 3 cut(s) 469, 718, 926
MnlI CCTC 6 cut(s) 24, 48, 139, 427, 544, 820
Mph1103I ATGCAT 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 909
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 4 cut(s) 200, 223, 698, 709
MspR9I CCNGG 4 cut(s) 91, 200, 201, 224
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 369, 407, 512
NciI CCSGG 3 cut(s) 200, 201, 224
NdeII GATC 4 cut(s) 10, 491, 496, 847
NlaIII CATG 3 cut(s) 122, 182, 376
NlaIV GGNNCC 6 cut(s) 12, 160, 161, 215, 216, 417
NmuCI GTSAC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 4, 191
PkrI GCNGC 2 cut(s) 390, 911
PshBI ATTAAT 1 cut(s) 264
PsiI TTATAA 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 6 cut(s) 12, 160, 161, 215, 216, 417
PspOMI GGGCCC 2 cut(s) 159, 214
PspPI GGNCC 5 cut(s) 159, 160, 214, 215, 252
PsuI RGATCY 3 cut(s) 10, 496, 847
SatI GCNGC 2 cut(s) 389, 910
Sau3AI GATC 4 cut(s) 10, 491, 496, 847
Sau96I GGNCC 5 cut(s) 159, 160, 214, 215, 252
ScrFI CCNGG 4 cut(s) 91, 200, 201, 224
SduI GDGCHC 3 cut(s) 163, 200, 218
SetI ASST 5 cut(s) 49, 59, 484, 517, 525
SinI GGWCC 1 cut(s) 252
SmaI CCCGGG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SsiI CCGC 4 cut(s) 168, 401, 408, 907
SspI AATATT 2 cut(s) 278, 606
StyD4I CCNGG 4 cut(s) 89, 198, 199, 222
TaaI ACNGT 4 cut(s) 143, 187, 511, 924
TaqI TCGA 1 cut(s) 194
TfiI GAWTC 2 cut(s) 4, 191
TscAI CASTG 2 cut(s) 693, 945
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 388, 909
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 789
TspMI CCCGGG 1 cut(s) 199
TspRI CASTG 2 cut(s) 693, 945
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 252
VspI ATTAAT 1 cut(s) 264
XapI RAATTY 4 cut(s) 293, 381, 545, 576
XmaI CCCGGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 926
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.