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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 51 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 853 |
| AccII | CGCG | 2 cut(s) | 1149, 1448 |
| AciI | CCGC | 2 cut(s) | 482, 1432 |
| AclWI | GGATC | 2 cut(s) | 492, 722 |
| AcsI | RAATTY | 6 cut(s) | 252, 387, 442, 1174, 1309, 1347 |
| AdeI | CACNNNGTG | 1 cut(s) | 938 |
| AfaI | GTAC | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 477, 478, 603, 1045, 1239, 1240 |
| AflII | CTTAAG | 1 cut(s) | 34 |
| AgeI | ACCGGT | 1 cut(s) | 294 |
| AjnI | CCWGG | 2 cut(s) | 601, 723 |
| AluBI | AGCT | 7 cut(s) | 269, 276, 667, 832, 1016, 1123, 1272 |
| AluI | AGCT | 7 cut(s) | 269, 276, 667, 832, 1016, 1123, 1272 |
| Alw21I | GWGCWC | 3 cut(s) | 613, 669, 1125 |
| Alw26I | GTCTC | 2 cut(s) | 359, 839 |
| AlwI | GGATC | 2 cut(s) | 492, 722 |
| Ama87I | CYCGRG | 2 cut(s) | 476, 493 |
| AoxI | GGCC | 3 cut(s) | 496, 676, 1429 |
| ApeKI | GCWGC | 1 cut(s) | 829 |
| ApoI | RAATTY | 6 cut(s) | 252, 387, 442, 1174, 1309, 1347 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 379, 411 |
| AseI | ATTAAT | 1 cut(s) | 354 |
| AsiGI | ACCGGT | 1 cut(s) | 294 |
| AspLEI | GCGC | 1 cut(s) | 1149 |
| AspS9I | GGNCC | 1 cut(s) | 496 |
| AsuC2I | CCSGG | 4 cut(s) | 477, 478, 494, 495 |
| AsuHPI | GGTGA | 2 cut(s) | 586, 941 |
| AvaI | CYCGRG | 2 cut(s) | 476, 493 |
| BaeGI | GKGCMC | 1 cut(s) | 1246 |
| BanII | GRGCYC | 2 cut(s) | 669, 1125 |
| BauI | CACGAG | 2 cut(s) | 573, 680 |
| Bbv12I | GWGCWC | 3 cut(s) | 613, 669, 1125 |
| BbvI | GCAGC | 1 cut(s) | 841 |
| BccI | CCATC | 4 cut(s) | 290, 606, 1328, 1521 |
| BceAI | ACGGC | 1 cut(s) | 1251 |
| BciT130I | CCWGG | 2 cut(s) | 603, 725 |
| BciVI | GTATCC | 1 cut(s) | 1042 |
| BclI | TGATCA | 1 cut(s) | 1287 |
| BcnI | CCSGG | 4 cut(s) | 477, 478, 494, 495 |
| BcoDI | GTCTC | 2 cut(s) | 359, 839 |
| BfaI | CTAG | 6 cut(s) | 165, 614, 686, 1170, 1427, 1666 |
| BfmI | CTRYAG | 2 cut(s) | 799, 1011 |
| BfrI | CTTAAG | 1 cut(s) | 34 |
| BfuI | GTATCC | 1 cut(s) | 1042 |
| BglII | AGATCT | 1 cut(s) | 38 |
| BisI | GCNGC | 2 cut(s) | 830, 1432 |
| BlpI | GCTNAGC | 1 cut(s) | 277 |
| BlsI | GCNGC | 2 cut(s) | 831, 1433 |
| Bme1390I | CCNGG | 6 cut(s) | 477, 478, 494, 495, 603, 725 |
| BmeT110I | CYCGRG | 2 cut(s) | 476, 493 |
| BmgT120I | GGNCC | 1 cut(s) | 496 |
| BmiI | GGNNCC | 1 cut(s) | 651 |
| BmrFI | CCNGG | 6 cut(s) | 477, 478, 494, 495, 603, 725 |
| BmrI | ACTGGG | 1 cut(s) | 580 |
| BmuI | ACTGGG | 1 cut(s) | 580 |
| BpmI | CTGGAG | 2 cut(s) | 474, 1246 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 277 |
| BpuEI | CTTGAG | 1 cut(s) | 1163 |
| BpuMI | CCSGG | 4 cut(s) | 477, 478, 494, 495 |
| BsaAI | YACGTR | 3 cut(s) | 935, 978, 996 |
| BsaJI | CCNNGG | 6 cut(s) | 476, 477, 493, 602, 723, 724 |
| BsaWI | WCCGGW | 1 cut(s) | 294 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 447, 477 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 477, 478, 603, 1045, 1239, 1240 |
| Bse118I | RCCGGY | 1 cut(s) | 294 |
| Bse1I | ACTGG | 3 cut(s) | 586, 660, 1576 |
| BseBI | CCWGG | 2 cut(s) | 603, 725 |
| BseDI | CCNNGG | 6 cut(s) | 476, 477, 493, 602, 723, 724 |
| BseGI | GGATG | 3 cut(s) | 467, 598, 743 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 477, 478, 603, 1045, 1239, 1240 |
| BseMII | CTCAG | 1 cut(s) | 291 |
| BseNI | ACTGG | 3 cut(s) | 586, 660, 1576 |
| BseRI | GAGGAG | 1 cut(s) | 1031 |
| BseSI | GKGCMC | 1 cut(s) | 1246 |
| BseXI | GCAGC | 1 cut(s) | 841 |
| BseYI | CCCAGC | 1 cut(s) | 471 |
| Bsh1236I | CGCG | 2 cut(s) | 1149, 1448 |
| BshFI | GGCC | 3 cut(s) | 498, 678, 1431 |
| BshTI | ACCGGT | 1 cut(s) | 294 |
| BsiHKAI | GWGCWC | 3 cut(s) | 613, 669, 1125 |
| BsiHKCI | CYCGRG | 2 cut(s) | 476, 493 |
| BsiSI | CCGG | 3 cut(s) | 295, 477, 494 |
| BslFI | GGGAC | 1 cut(s) | 705 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 477, 478, 603, 1045, 1239, 1240 |
| BsmAI | GTCTC | 2 cut(s) | 359, 839 |
| BsmFI | GGGAC | 1 cut(s) | 705 |
| BsnI | GGCC | 3 cut(s) | 498, 678, 1431 |
| BsoBI | CYCGRG | 2 cut(s) | 476, 493 |
| Bsp1286I | GDGCHC | 4 cut(s) | 613, 669, 1125, 1246 |
| Bsp143I | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 277 |
| BspACI | CCGC | 2 cut(s) | 482, 1432 |
| BspANI | GGCC | 3 cut(s) | 498, 678, 1431 |
| BspCNI | CTCAG | 1 cut(s) | 290 |
| BspFNI | CGCG | 2 cut(s) | 1149, 1448 |
| BspHI | TCATGA | 2 cut(s) | 823, 841 |
| BspLI | GGNNCC | 1 cut(s) | 651 |
| BspPI | GGATC | 2 cut(s) | 492, 722 |
| BspTI | CTTAAG | 1 cut(s) | 34 |
| BsrFI | RCCGGY | 1 cut(s) | 294 |
| BsrI | ACTGG | 3 cut(s) | 586, 660, 1576 |
| BssAI | RCCGGY | 1 cut(s) | 294 |
| BssECI | CCNNGG | 6 cut(s) | 476, 477, 493, 602, 723, 724 |
| BssMI | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| BssSI | CACGAG | 2 cut(s) | 573, 680 |
| Bst2BI | CACGAG | 2 cut(s) | 573, 680 |
| Bst2UI | CCWGG | 2 cut(s) | 603, 725 |
| Bst4CI | ACNGT | 3 cut(s) | 512, 554, 1012 |
| Bst6I | CTCTTC | 2 cut(s) | 146, 976 |
| BstAFI | CTTAAG | 1 cut(s) | 34 |
| BstBAI | YACGTR | 3 cut(s) | 935, 978, 996 |
| BstC8I | GCNNGC | 1 cut(s) | 500 |
| BstDEI | CTNAG | 4 cut(s) | 105, 194, 277, 1375 |
| BstEII | GGTNACC | 1 cut(s) | 592 |
| BstF5I | GGATG | 3 cut(s) | 467, 598, 743 |
| BstFNI | CGCG | 2 cut(s) | 1149, 1448 |
| BstHHI | GCGC | 1 cut(s) | 1149 |
| BstKTI | GATC | 4 cut(s) | 41, 487, 717, 1290 |
| BstMAI | GTCTC | 2 cut(s) | 359, 839 |
| BstMBI | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 691 |
| BstNI | CCWGG | 2 cut(s) | 603, 725 |
| BstPI | GGTNACC | 1 cut(s) | 592 |
| BstSCI | CCNGG | 6 cut(s) | 475, 476, 492, 493, 601, 723 |
| BstSFI | CTRYAG | 2 cut(s) | 799, 1011 |
| BstSLI | GKGCMC | 1 cut(s) | 1246 |
| BstSNI | TACGTA | 2 cut(s) | 978, 996 |
| BstUI | CGCG | 2 cut(s) | 1149, 1448 |
| BstV1I | GCAGC | 1 cut(s) | 841 |
| BstX2I | RGATCY | 1 cut(s) | 38 |
| BstYI | RGATCY | 1 cut(s) | 38 |
| BsuI | GTATCC | 1 cut(s) | 1042 |
| BsuRI | GGCC | 3 cut(s) | 498, 678, 1431 |
| BtgZI | GCGATG | 1 cut(s) | 744 |
| BtsCI | GGATG | 3 cut(s) | 467, 598, 743 |
| BtsIMutI | CAGTG | 2 cut(s) | 593, 667 |
| Cac8I | GCNNGC | 1 cut(s) | 500 |
| CciI | TCATGA | 2 cut(s) | 823, 841 |
| CfoI | GCGC | 1 cut(s) | 1149 |
| Cfr10I | RCCGGY | 1 cut(s) | 294 |
| Cfr13I | GGNCC | 1 cut(s) | 496 |
| Cfr9I | CCCGGG | 2 cut(s) | 476, 493 |
| CseI | GACGC | 1 cut(s) | 1437 |
| Csp6I | GTAC | 1 cut(s) | 341 |
| CspAI | ACCGGT | 1 cut(s) | 294 |
| CviAII | CATG | 6 cut(s) | 695, 824, 842, 858, 1045, 1352 |
| CviQI | GTAC | 1 cut(s) | 341 |
| DdeI | CTNAG | 4 cut(s) | 105, 194, 277, 1375 |
| DpnI | GATC | 4 cut(s) | 40, 486, 716, 1289 |
| DpnII | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| DraI | TTTAAA | 1 cut(s) | 760 |
| DraIII | CACNNNGTG | 1 cut(s) | 938 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 853 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 853 |
| Eam1104I | CTCTTC | 2 cut(s) | 146, 976 |
| EarI | CTCTTC | 2 cut(s) | 146, 976 |
| EciI | GGCGGA | 1 cut(s) | 497 |
| Ecl136II | GAGCTC | 2 cut(s) | 667, 1123 |
| Eco105I | TACGTA | 2 cut(s) | 978, 996 |
| Eco147I | AGGCCT | 1 cut(s) | 678 |
| Eco24I | GRGCYC | 2 cut(s) | 669, 1125 |
| Eco53kI | GAGCTC | 2 cut(s) | 667, 1123 |
| Eco88I | CYCGRG | 2 cut(s) | 476, 493 |
| Eco91I | GGTNACC | 1 cut(s) | 592 |
| EcoICRI | GAGCTC | 2 cut(s) | 667, 1123 |
| EcoO65I | GGTNACC | 1 cut(s) | 592 |
| EcoRII | CCWGG | 2 cut(s) | 601, 723 |
| EcoT38I | GRGCYC | 2 cut(s) | 669, 1125 |
| FaeI | CATG | 6 cut(s) | 698, 827, 845, 861, 1048, 1355 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1358, 1390 |
| FaqI | GGGAC | 1 cut(s) | 705 |
| FatI | CATG | 6 cut(s) | 694, 823, 841, 857, 1044, 1351 |
| FbaI | TGATCA | 1 cut(s) | 1287 |
| Fnu4HI | GCNGC | 2 cut(s) | 830, 1432 |
| FokI | GGATG | 3 cut(s) | 454, 585, 750 |
| FriOI | GRGCYC | 2 cut(s) | 669, 1125 |
| Fsp4HI | GCNGC | 2 cut(s) | 830, 1432 |
| FspBI | CTAG | 6 cut(s) | 165, 614, 686, 1170, 1427, 1666 |
| GlaI | GCGC | 1 cut(s) | 1148 |
| GluI | GCNGC | 2 cut(s) | 830, 1432 |
| GsaI | CCCAGC | 1 cut(s) | 475 |
| GsuI | CTGGAG | 2 cut(s) | 474, 1246 |
| HaeIII | GGCC | 3 cut(s) | 498, 678, 1431 |
| HapII | CCGG | 3 cut(s) | 295, 477, 494 |
| HgaI | GACGC | 1 cut(s) | 1437 |
| HhaI | GCGC | 1 cut(s) | 1149 |
| Hin1II | CATG | 6 cut(s) | 698, 827, 845, 861, 1048, 1355 |
| Hin6I | GCGC | 1 cut(s) | 1147 |
| HinP1I | GCGC | 1 cut(s) | 1147 |
| HincII | GTYRAC | 1 cut(s) | 1357 |
| HindII | GTYRAC | 1 cut(s) | 1357 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 6 cut(s) | 26, 311, 328, 1469, 1621, 1662 |
| HpaII | CCGG | 3 cut(s) | 295, 477, 494 |
| HphI | GGTGA | 2 cut(s) | 586, 941 |
| Hpy166II | GTNNAC | 3 cut(s) | 292, 1317, 1357 |
| Hpy188I | TCNGA | 3 cut(s) | 310, 638, 1661 |
| Hpy188III | TCNNGA | 6 cut(s) | 438, 453, 573, 824, 842, 1306 |
| Hpy8I | GTNNAC | 3 cut(s) | 292, 1317, 1357 |
| Hpy99I | CGWCG | 1 cut(s) | 1453 |
| HpyAV | CCTTC | 2 cut(s) | 968, 1174 |
| HpyCH4III | ACNGT | 3 cut(s) | 512, 554, 1012 |
| HpyCH4IV | ACGT | 5 cut(s) | 288, 934, 977, 995, 1436 |
| HpyCH4V | TGCA | 2 cut(s) | 1003, 1083 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 691 |
| HpyF3I | CTNAG | 4 cut(s) | 105, 194, 277, 1375 |
| HpySE526I | ACGT | 5 cut(s) | 288, 934, 977, 995, 1436 |
| Hsp92II | CATG | 6 cut(s) | 698, 827, 845, 861, 1048, 1355 |
| HspAI | GCGC | 1 cut(s) | 1147 |
| Ksp22I | TGATCA | 1 cut(s) | 1287 |
| Kzo9I | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| LmnI | GCTCC | 2 cut(s) | 507, 672 |
| Lsp1109I | GCAGC | 1 cut(s) | 841 |
| MaeI | CTAG | 6 cut(s) | 165, 614, 686, 1170, 1427, 1666 |
| MaeII | ACGT | 5 cut(s) | 288, 934, 977, 995, 1436 |
| MaeIII | GTNAC | 5 cut(s) | 182, 463, 592, 740, 947 |
| MalI | GATC | 4 cut(s) | 40, 486, 716, 1289 |
| MboI | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| MboII | GAAGA | 4 cut(s) | 163, 406, 901, 963 |
| MflI | RGATCY | 1 cut(s) | 38 |
| MhlI | GDGCHC | 4 cut(s) | 613, 669, 1125, 1246 |
| MlyI | GAGTC | 2 cut(s) | 322, 1615 |
| MmeI | TCCRAC | 2 cut(s) | 1011, 1216 |
| MspCI | CTTAAG | 1 cut(s) | 34 |
| MspI | CCGG | 3 cut(s) | 295, 477, 494 |
| MspR9I | CCNGG | 6 cut(s) | 477, 478, 494, 495, 603, 725 |
| MvaI | CCWGG | 2 cut(s) | 603, 725 |
| MvnI | CGCG | 2 cut(s) | 1149, 1448 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 691 |
| NciI | CCSGG | 4 cut(s) | 477, 478, 494, 495 |
| NdeII | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| NlaIII | CATG | 6 cut(s) | 698, 827, 845, 861, 1048, 1355 |
| NlaIV | GGNNCC | 1 cut(s) | 651 |
| NmuCI | GTSAC | 4 cut(s) | 463, 592, 740, 947 |
| PagI | TCATGA | 2 cut(s) | 823, 841 |
| PasI | CCCWGGG | 1 cut(s) | 724 |
| PceI | AGGCCT | 1 cut(s) | 678 |
| PfeI | GAWTC | 3 cut(s) | 26, 311, 1469 |
| PinAI | ACCGGT | 1 cut(s) | 294 |
| PkrI | GCNGC | 2 cut(s) | 831, 1433 |
| PleI | GAGTC | 2 cut(s) | 322, 1615 |
| PpsI | GAGTC | 2 cut(s) | 322, 1615 |
| Ppu21I | YACGTR | 3 cut(s) | 935, 978, 996 |
| PshBI | ATTAAT | 1 cut(s) | 354 |
| PsiI | TTATAA | 1 cut(s) | 51 |
| Psp124BI | GAGCTC | 2 cut(s) | 669, 1125 |
| Psp6I | CCWGG | 2 cut(s) | 601, 723 |
| PspEI | GGTNACC | 1 cut(s) | 592 |
| PspFI | CCCAGC | 1 cut(s) | 471 |
| PspGI | CCWGG | 2 cut(s) | 601, 723 |
| PspN4I | GGNNCC | 1 cut(s) | 651 |
| PspPI | GGNCC | 1 cut(s) | 496 |
| PsuI | RGATCY | 1 cut(s) | 38 |
| RsaI | GTAC | 1 cut(s) | 342 |
| RsaNI | GTAC | 1 cut(s) | 341 |
| SacI | GAGCTC | 2 cut(s) | 669, 1125 |
| SatI | GCNGC | 2 cut(s) | 830, 1432 |
| Sau3AI | GATC | 4 cut(s) | 38, 484, 714, 1287 |
| Sau96I | GGNCC | 1 cut(s) | 496 |
| SchI | GAGTC | 2 cut(s) | 322, 1615 |
| ScrFI | CCNGG | 6 cut(s) | 477, 478, 494, 495, 603, 725 |
| SduI | GDGCHC | 4 cut(s) | 613, 669, 1125, 1246 |
| SfcI | CTRYAG | 2 cut(s) | 799, 1011 |
| SmaI | CCCGGG | 2 cut(s) | 478, 495 |
| SmlI | CTYRAG | 2 cut(s) | 34, 1142 |
| SmoI | CTYRAG | 2 cut(s) | 34, 1142 |
| SnaBI | TACGTA | 2 cut(s) | 978, 996 |
| SseBI | AGGCCT | 1 cut(s) | 678 |
| SsiI | CCGC | 2 cut(s) | 482, 1432 |
| SspI | AATATT | 2 cut(s) | 94, 1129 |
| SspMI | CTAG | 6 cut(s) | 165, 614, 686, 1170, 1427, 1666 |
| SstI | GAGCTC | 2 cut(s) | 669, 1125 |
| StuI | AGGCCT | 1 cut(s) | 678 |
| StyD4I | CCNGG | 6 cut(s) | 475, 476, 492, 493, 601, 723 |
| TaaI | ACNGT | 3 cut(s) | 512, 554, 1012 |
| TaiI | ACGT | 5 cut(s) | 291, 937, 980, 998, 1439 |
| TaqI | TCGA | 2 cut(s) | 29, 1414 |
| TauI | GCSGC | 1 cut(s) | 1434 |
| TfiI | GAWTC | 3 cut(s) | 26, 311, 1469 |
| TscAI | CASTG | 2 cut(s) | 593, 667 |
| TseFI | GTSAC | 4 cut(s) | 463, 592, 740, 947 |
| TseI | GCWGC | 1 cut(s) | 829 |
| Tsp45I | GTSAC | 4 cut(s) | 463, 592, 740, 947 |
| TspDTI | ATGAA | 3 cut(s) | 830, 1340, 1482 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| TspMI | CCCGGG | 2 cut(s) | 476, 493 |
| TspRI | CASTG | 2 cut(s) | 593, 667 |
| Vha464I | CTTAAG | 1 cut(s) | 34 |
| VspI | ATTAAT | 1 cut(s) | 354 |
| XapI | RAATTY | 6 cut(s) | 252, 387, 442, 1174, 1309, 1347 |
| XmaI | CCCGGG | 2 cut(s) | 476, 493 |
| XspI | CTAG | 6 cut(s) | 165, 614, 686, 1170, 1427, 1666 |