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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 812, 1418, 2184 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2171 |
| AatII | GACGTC | 1 cut(s) | 305 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 277 |
| AccI | GTMKAC | 2 cut(s) | 1808, 1978 |
| AccII | CGCG | 2 cut(s) | 97, 99 |
| AciI | CCGC | 2 cut(s) | 243, 786 |
| AclI | AACGTT | 1 cut(s) | 2187 |
| AclWI | GGATC | 3 cut(s) | 26, 39, 1569 |
| AcoI | YGGCCR | 1 cut(s) | 1338 |
| AcuI | CTGAAG | 1 cut(s) | 1049 |
| AcyI | GRCGYC | 1 cut(s) | 302 |
| AdeI | CACNNNGTG | 1 cut(s) | 1621 |
| AfaI | GTAC | 4 cut(s) | 5, 763, 2302, 2314 |
| AflIII | ACRYGT | 1 cut(s) | 778 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 666 |
| AhlI | ACTAGT | 1 cut(s) | 89 |
| AjnI | CCWGG | 6 cut(s) | 110, 276, 388, 497, 670, 2048 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 37, 1311, 1343 |
| AleI | CACNNNNGTG | 1 cut(s) | 1203 |
| AluBI | AGCT | 4 cut(s) | 369, 1364, 2059, 2127 |
| AluI | AGCT | 4 cut(s) | 369, 1364, 2059, 2127 |
| Alw21I | GWGCWC | 2 cut(s) | 371, 840 |
| Alw26I | GTCTC | 3 cut(s) | 2014, 2030, 2492 |
| Alw44I | GTGCAC | 1 cut(s) | 836 |
| AlwI | GGATC | 3 cut(s) | 26, 39, 1569 |
| Ama87I | CYCGRG | 3 cut(s) | 220, 238, 1570 |
| AoxI | GGCC | 9 cut(s) | 77, 180, 235, 356, 458, 1210, 1338, 1548, 1556 |
| ApaI | GGGCCC | 4 cut(s) | 184, 239, 462, 1560 |
| ApaLI | GTGCAC | 1 cut(s) | 836 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1311, 1865 |
| AspA2I | CCTAGG | 1 cut(s) | 1331 |
| AspLEI | GCGC | 1 cut(s) | 99 |
| AsuC2I | CCSGG | 4 cut(s) | 221, 222, 239, 240 |
| AsuHPI | GGTGA | 3 cut(s) | 131, 409, 1190 |
| AvaI | CYCGRG | 3 cut(s) | 220, 238, 1570 |
| AvrII | CCTAGG | 1 cut(s) | 1331 |
| AxyI | CCTNAGG | 1 cut(s) | 1552 |
| BaeGI | GKGCMC | 5 cut(s) | 184, 239, 462, 840, 1560 |
| BalI | TGGCCA | 1 cut(s) | 1340 |
| BamHI | GGATCC | 1 cut(s) | 31 |
| BanII | GRGCYC | 6 cut(s) | 184, 221, 239, 371, 462, 1560 |
| BauI | CACGAG | 4 cut(s) | 73, 138, 352, 416 |
| Bbv12I | GWGCWC | 2 cut(s) | 371, 840 |
| BccI | CCATC | 8 cut(s) | 67, 109, 346, 387, 992, 1637, 2112, 2473 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2274, 2308 |
| BciT130I | CCWGG | 6 cut(s) | 112, 278, 390, 499, 672, 2050 |
| BcnI | CCSGG | 4 cut(s) | 221, 222, 239, 240 |
| BcoDI | GTCTC | 3 cut(s) | 2014, 2030, 2492 |
| BcuI | ACTAGT | 1 cut(s) | 89 |
| BfaI | CTAG | 4 cut(s) | 69, 90, 348, 1332 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1547 |
| BisI | GCNGC | 1 cut(s) | 786 |
| BlnI | CCTAGG | 1 cut(s) | 1331 |
| BlpI | GCTNAGC | 1 cut(s) | 1183 |
| BlsI | GCNGC | 1 cut(s) | 787 |
| BmcAI | AGTACT | 1 cut(s) | 763 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 666 |
| BmeT110I | CYCGRG | 3 cut(s) | 220, 238, 1570 |
| BmiI | GGNNCC | 9 cut(s) | 33, 181, 182, 236, 237, 460, 1243, 1279, 1558 |
| BmrI | ACTGGG | 3 cut(s) | 137, 415, 1663 |
| BmuI | ACTGGG | 3 cut(s) | 137, 415, 1663 |
| BoxI | GACNNNNGTC | 1 cut(s) | 305 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1183 |
| BpuEI | CTTGAG | 2 cut(s) | 1535, 2075 |
| BpuMI | CCSGG | 4 cut(s) | 221, 222, 239, 240 |
| BsaAI | YACGTR | 1 cut(s) | 781 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2464 |
| BsaHI | GRCGYC | 1 cut(s) | 302 |
| BsaI | GGTCTC | 1 cut(s) | 2030 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2472, 2502 |
| Bse1I | ACTGG | 5 cut(s) | 132, 378, 410, 1658, 1816 |
| Bse21I | CCTNAGG | 1 cut(s) | 1552 |
| Bse3DI | GCAATG | 2 cut(s) | 890, 2236 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2464 |
| BseBI | CCWGG | 6 cut(s) | 112, 278, 390, 499, 672, 2050 |
| BseJI | GATNNNNATC | 1 cut(s) | 2464 |
| BseMI | GCAATG | 2 cut(s) | 890, 2236 |
| BseMII | CTCAG | 1 cut(s) | 513 |
| BseNI | ACTGG | 5 cut(s) | 132, 378, 410, 1658, 1816 |
| BseSI | GKGCMC | 5 cut(s) | 184, 239, 462, 840, 1560 |
| BseYI | CCCAGC | 1 cut(s) | 1455 |
| BsgI | GTGCAG | 1 cut(s) | 881 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 99 |
| Bsh1285I | CGRYCG | 1 cut(s) | 309 |
| BshFI | GGCC | 9 cut(s) | 79, 182, 237, 358, 460, 1212, 1340, 1550, 1558 |
| BsiEI | CGRYCG | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 2 cut(s) | 371, 840 |
| BsiHKCI | CYCGRG | 3 cut(s) | 220, 238, 1570 |
| BsiSI | CCGG | 2 cut(s) | 221, 239 |
| BslFI | GGGAC | 2 cut(s) | 100, 966 |
| BsmAI | GTCTC | 3 cut(s) | 2014, 2030, 2492 |
| BsmFI | GGGAC | 2 cut(s) | 100, 966 |
| BsmI | GAATGC | 1 cut(s) | 1910 |
| BsnI | GGCC | 9 cut(s) | 79, 182, 237, 358, 460, 1212, 1340, 1550, 1558 |
| Bso31I | GGTCTC | 1 cut(s) | 2030 |
| BsoBI | CYCGRG | 3 cut(s) | 220, 238, 1570 |
| Bsp120I | GGGCCC | 4 cut(s) | 180, 235, 458, 1556 |
| Bsp1286I | GDGCHC | 7 cut(s) | 184, 221, 239, 371, 462, 840, 1560 |
| Bsp143I | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1183 |
| Bsp19I | CCATGG | 1 cut(s) | 2263 |
| BspACI | CCGC | 2 cut(s) | 243, 786 |
| BspANI | GGCC | 9 cut(s) | 79, 182, 237, 358, 460, 1212, 1340, 1550, 1558 |
| BspCNI | CTCAG | 1 cut(s) | 514 |
| BspFNI | CGCG | 2 cut(s) | 97, 99 |
| BspLI | GGNNCC | 9 cut(s) | 33, 181, 182, 236, 237, 460, 1243, 1279, 1558 |
| BspPI | GGATC | 3 cut(s) | 26, 39, 1569 |
| BspTNI | GGTCTC | 1 cut(s) | 2030 |
| BsrDI | GCAATG | 2 cut(s) | 890, 2236 |
| BsrI | ACTGG | 5 cut(s) | 132, 378, 410, 1658, 1816 |
| BssMI | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| BssNI | GRCGYC | 1 cut(s) | 302 |
| BssSI | CACGAG | 4 cut(s) | 73, 138, 352, 416 |
| BssT1I | CCWWGG | 3 cut(s) | 1237, 1331, 2263 |
| Bst2BI | CACGAG | 4 cut(s) | 73, 138, 352, 416 |
| Bst2UI | CCWGG | 6 cut(s) | 112, 278, 390, 499, 672, 2050 |
| Bst4CI | ACNGT | 4 cut(s) | 208, 486, 1718, 2258 |
| Bst6I | CTCTTC | 3 cut(s) | 744, 1674, 1741 |
| BstACI | GRCGYC | 1 cut(s) | 302 |
| BstBAI | YACGTR | 1 cut(s) | 781 |
| BstC8I | GCNNGC | 7 cut(s) | 513, 896, 927, 1973, 2125, 2152, 2283 |
| BstDEI | CTNAG | 4 cut(s) | 522, 1183, 1349, 1552 |
| BstDSI | CCRYGG | 1 cut(s) | 2263 |
| BstEII | GGTNACC | 2 cut(s) | 119, 397 |
| BstFNI | CGCG | 2 cut(s) | 97, 99 |
| BstHHI | GCGC | 1 cut(s) | 99 |
| BstKTI | GATC | 4 cut(s) | 34, 313, 1577, 2275 |
| BstMAI | GTCTC | 3 cut(s) | 2014, 2030, 2492 |
| BstMBI | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| BstMCI | CGRYCG | 1 cut(s) | 309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1547 |
| BstNI | CCWGG | 6 cut(s) | 112, 278, 390, 499, 672, 2050 |
| BstNSI | RCATGY | 1 cut(s) | 929 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 305 |
| BstPI | GGTNACC | 2 cut(s) | 119, 397 |
| BstSLI | GKGCMC | 5 cut(s) | 184, 239, 462, 840, 1560 |
| BstUI | CGCG | 2 cut(s) | 97, 99 |
| BstX2I | RGATCY | 2 cut(s) | 31, 1574 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1252, 1463 |
| BstYI | RGATCY | 2 cut(s) | 31, 1574 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1552 |
| BsuRI | GGCC | 9 cut(s) | 79, 182, 237, 358, 460, 1212, 1340, 1550, 1558 |
| BtgI | CCRYGG | 1 cut(s) | 2263 |
| BtsIMutI | CAGTG | 7 cut(s) | 125, 371, 403, 1651, 1823, 1932, 2285 |
| Cac8I | GCNNGC | 7 cut(s) | 513, 896, 927, 1973, 2125, 2152, 2283 |
| CfoI | GCGC | 1 cut(s) | 99 |
| Cfr9I | CCCGGG | 2 cut(s) | 220, 238 |
| Csp6I | GTAC | 4 cut(s) | 4, 762, 2301, 2313 |
| CviQI | GTAC | 4 cut(s) | 4, 762, 2301, 2313 |
| DdeI | CTNAG | 4 cut(s) | 522, 1183, 1349, 1552 |
| DpnI | GATC | 4 cut(s) | 33, 312, 1576, 2274 |
| DpnII | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| DraI | TTTAAA | 2 cut(s) | 966, 2521 |
| DraIII | CACNNNGTG | 1 cut(s) | 1621 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2171 |
| DriI | GACNNNNNGTC | 1 cut(s) | 666 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2171 |
| EaeI | YGGCCR | 1 cut(s) | 1338 |
| Eam1104I | CTCTTC | 3 cut(s) | 744, 1674, 1741 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 666 |
| EarI | CTCTTC | 3 cut(s) | 744, 1674, 1741 |
| Ecl136II | GAGCTC | 1 cut(s) | 369 |
| Eco130I | CCWWGG | 3 cut(s) | 1237, 1331, 2263 |
| Eco147I | AGGCCT | 2 cut(s) | 79, 358 |
| Eco24I | GRGCYC | 6 cut(s) | 184, 221, 239, 371, 462, 1560 |
| Eco31I | GGTCTC | 1 cut(s) | 2030 |
| Eco32I | GATATC | 2 cut(s) | 1989, 2292 |
| Eco53kI | GAGCTC | 1 cut(s) | 369 |
| Eco57I | CTGAAG | 1 cut(s) | 1049 |
| Eco81I | CCTNAGG | 1 cut(s) | 1552 |
| Eco88I | CYCGRG | 3 cut(s) | 220, 238, 1570 |
| Eco91I | GGTNACC | 2 cut(s) | 119, 397 |
| EcoICRI | GAGCTC | 1 cut(s) | 369 |
| EcoO109I | RGGNCCY | 4 cut(s) | 180, 235, 458, 1556 |
| EcoO65I | GGTNACC | 2 cut(s) | 119, 397 |
| EcoRI | GAATTC | 4 cut(s) | 795, 915, 1865, 1945 |
| EcoRII | CCWGG | 6 cut(s) | 110, 276, 388, 497, 670, 2048 |
| EcoRV | GATATC | 2 cut(s) | 1989, 2292 |
| EcoT14I | CCWWGG | 3 cut(s) | 1237, 1331, 2263 |
| EcoT22I | ATGCAT | 1 cut(s) | 1076 |
| EcoT38I | GRGCYC | 6 cut(s) | 184, 221, 239, 371, 462, 1560 |
| ErhI | CCWWGG | 3 cut(s) | 1237, 1331, 2263 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1161, 1193 |
| FaqI | GGGAC | 2 cut(s) | 100, 966 |
| FauI | CCCGC | 1 cut(s) | 236 |
| FblI | GTMKAC | 2 cut(s) | 1808, 1978 |
| Fnu4HI | GCNGC | 1 cut(s) | 786 |
| FriOI | GRGCYC | 6 cut(s) | 184, 221, 239, 371, 462, 1560 |
| Fsp4HI | GCNGC | 1 cut(s) | 786 |
| FspBI | CTAG | 4 cut(s) | 69, 90, 348, 1332 |
| GlaI | GCGC | 1 cut(s) | 98 |
| GluI | GCNGC | 1 cut(s) | 786 |
| GsaI | CCCAGC | 1 cut(s) | 1459 |
| HaeIII | GGCC | 9 cut(s) | 79, 182, 237, 358, 460, 1212, 1340, 1550, 1558 |
| HapII | CCGG | 2 cut(s) | 221, 239 |
| HhaI | GCGC | 1 cut(s) | 99 |
| Hin1I | GRCGYC | 1 cut(s) | 302 |
| Hin6I | GCGC | 1 cut(s) | 97 |
| HinP1I | GCGC | 1 cut(s) | 97 |
| HincII | GTYRAC | 1 cut(s) | 2245 |
| HindII | GTYRAC | 1 cut(s) | 2245 |
| HindIII | AAGCTT | 1 cut(s) | 2125 |
| HinfI | GANTC | 9 cut(s) | 212, 490, 1098, 1312, 1635, 1823, 2246, 2347, 2547 |
| HpaII | CCGG | 2 cut(s) | 221, 239 |
| HphI | GGTGA | 3 cut(s) | 131, 409, 1190 |
| Hpy166II | GTNNAC | 7 cut(s) | 191, 319, 469, 838, 1809, 1979, 2245 |
| Hpy188I | TCNGA | 6 cut(s) | 267, 284, 756, 1634, 1745, 1944 |
| Hpy188III | TCNNGA | 5 cut(s) | 164, 442, 1027, 2384, 2441 |
| Hpy8I | GTNNAC | 7 cut(s) | 191, 319, 469, 838, 1809, 1979, 2245 |
| Hpy99I | CGWCG | 1 cut(s) | 307 |
| HpyAV | CCTTC | 5 cut(s) | 161, 886, 1024, 1223, 1297 |
| HpyCH4III | ACNGT | 4 cut(s) | 208, 486, 1718, 2258 |
| HpyCH4IV | ACGT | 6 cut(s) | 302, 628, 780, 834, 1788, 2187 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1547 |
| HpyF3I | CTNAG | 4 cut(s) | 522, 1183, 1349, 1552 |
| HpySE526I | ACGT | 6 cut(s) | 302, 628, 780, 834, 1788, 2187 |
| Hsp92I | GRCGYC | 1 cut(s) | 302 |
| HspAI | GCGC | 1 cut(s) | 97 |
| Kzo9I | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| LmnI | GCTCC | 4 cut(s) | 366, 1239, 1247, 1283 |
| MaeI | CTAG | 4 cut(s) | 69, 90, 348, 1332 |
| MaeII | ACGT | 6 cut(s) | 302, 628, 780, 834, 1788, 2187 |
| MaeIII | GTNAC | 5 cut(s) | 119, 250, 397, 658, 822 |
| MalI | GATC | 4 cut(s) | 33, 312, 1576, 2274 |
| MboI | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| MboII | GAAGA | 6 cut(s) | 731, 1319, 1590, 1661, 1758, 1931 |
| MfeI | CAATTG | 1 cut(s) | 1678 |
| MflI | RGATCY | 2 cut(s) | 31, 1574 |
| MhlI | GDGCHC | 7 cut(s) | 184, 221, 239, 371, 462, 840, 1560 |
| MlsI | TGGCCA | 1 cut(s) | 1340 |
| MluNI | TGGCCA | 1 cut(s) | 1340 |
| MlyI | GAGTC | 4 cut(s) | 221, 499, 2240, 2356 |
| MmeI | TCCRAC | 2 cut(s) | 262, 1237 |
| Mox20I | TGGCCA | 1 cut(s) | 1340 |
| Mph1103I | ATGCAT | 1 cut(s) | 1076 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1311, 1865 |
| MscI | TGGCCA | 1 cut(s) | 1340 |
| MseI | TTAA | 9 cut(s) | 17, 965, 1089, 1739, 1892, 2018, 2042, 2520, 2537 |
| MslI | CAYNNNNRTG | 5 cut(s) | 930, 1203, 1250, 2268, 2561 |
| Msp20I | TGGCCA | 1 cut(s) | 1340 |
| MspI | CCGG | 2 cut(s) | 221, 239 |
| MunI | CAATTG | 1 cut(s) | 1678 |
| Mva1269I | GAATGC | 1 cut(s) | 1910 |
| MvaI | CCWGG | 6 cut(s) | 112, 278, 390, 499, 672, 2050 |
| MvnI | CGCG | 2 cut(s) | 97, 99 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1547 |
| NciI | CCSGG | 4 cut(s) | 221, 222, 239, 240 |
| NcoI | CCATGG | 1 cut(s) | 2263 |
| NdeII | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| NlaIV | GGNNCC | 9 cut(s) | 33, 181, 182, 236, 237, 460, 1243, 1279, 1558 |
| NmuCI | GTSAC | 4 cut(s) | 119, 250, 397, 658 |
| NsiI | ATGCAT | 1 cut(s) | 1076 |
| NspI | RCATGY | 1 cut(s) | 929 |
| OliI | CACNNNNGTG | 1 cut(s) | 1203 |
| PaeI | GCATGC | 1 cut(s) | 929 |
| PceI | AGGCCT | 2 cut(s) | 79, 358 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 212, 490 |
| PctI | GAATGC | 1 cut(s) | 1910 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1311, 1865 |
| PfeI | GAWTC | 5 cut(s) | 1098, 1312, 1635, 1823, 2547 |
| PflFI | GACNNNGTC | 1 cut(s) | 2484 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 277 |
| PfoI | TCCNGGA | 1 cut(s) | 670 |
| PkrI | GCNGC | 1 cut(s) | 787 |
| PleI | GAGTC | 4 cut(s) | 220, 498, 2240, 2355 |
| PpsI | GAGTC | 4 cut(s) | 220, 498, 2240, 2355 |
| Ppu21I | YACGTR | 1 cut(s) | 781 |
| PshAI | GACNNNNGTC | 1 cut(s) | 305 |
| PsiI | TTATAA | 3 cut(s) | 812, 1418, 2184 |
| Psp124BI | GAGCTC | 1 cut(s) | 371 |
| Psp1406I | AACGTT | 1 cut(s) | 2187 |
| Psp6I | CCWGG | 6 cut(s) | 110, 276, 388, 497, 670, 2048 |
| PspEI | GGTNACC | 2 cut(s) | 119, 397 |
| PspFI | CCCAGC | 1 cut(s) | 1455 |
| PspGI | CCWGG | 6 cut(s) | 110, 276, 388, 497, 670, 2048 |
| PspN4I | GGNNCC | 9 cut(s) | 33, 181, 182, 236, 237, 460, 1243, 1279, 1558 |
| PspOMI | GGGCCC | 4 cut(s) | 180, 235, 458, 1556 |
| PsuI | RGATCY | 2 cut(s) | 31, 1574 |
| PsyI | GACNNNGTC | 1 cut(s) | 2484 |
| RsaI | GTAC | 4 cut(s) | 5, 763, 2302, 2314 |
| RsaNI | GTAC | 4 cut(s) | 4, 762, 2301, 2313 |
| RseI | CAYNNNNRTG | 5 cut(s) | 930, 1203, 1250, 2268, 2561 |
| SacI | GAGCTC | 1 cut(s) | 371 |
| SaqAI | TTAA | 9 cut(s) | 17, 965, 1089, 1739, 1892, 2018, 2042, 2520, 2537 |
| SatI | GCNGC | 1 cut(s) | 786 |
| Sau3AI | GATC | 4 cut(s) | 31, 310, 1574, 2272 |
| ScaI | AGTACT | 1 cut(s) | 763 |
| SchI | GAGTC | 4 cut(s) | 221, 499, 2240, 2356 |
| SduI | GDGCHC | 7 cut(s) | 184, 221, 239, 371, 462, 840, 1560 |
| SmaI | CCCGGG | 2 cut(s) | 222, 240 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 930, 1203, 1250, 2268, 2561 |
| SmlI | CTYRAG | 2 cut(s) | 1514, 2054 |
| SmoI | CTYRAG | 2 cut(s) | 1514, 2054 |
| SpeI | ACTAGT | 1 cut(s) | 89 |
| SphI | GCATGC | 1 cut(s) | 929 |
| SrfI | GCCCGGGC | 1 cut(s) | 240 |
| SseBI | AGGCCT | 2 cut(s) | 79, 358 |
| SsiI | CCGC | 2 cut(s) | 243, 786 |
| SspI | AATATT | 2 cut(s) | 197, 475 |
| SspMI | CTAG | 4 cut(s) | 69, 90, 348, 1332 |
| SstI | GAGCTC | 1 cut(s) | 371 |
| StuI | AGGCCT | 2 cut(s) | 79, 358 |
| StyI | CCWWGG | 3 cut(s) | 1237, 1331, 2263 |
| TaaI | ACNGT | 4 cut(s) | 208, 486, 1718, 2258 |
| TaiI | ACGT | 6 cut(s) | 305, 631, 783, 837, 1791, 2190 |
| TaqI | TCGA | 3 cut(s) | 215, 309, 493 |
| TaqII | GACCGA | 1 cut(s) | 295 |
| TatI | WGTACW | 1 cut(s) | 761 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 5 cut(s) | 1098, 1312, 1635, 1823, 2547 |
| Tru1I | TTAA | 9 cut(s) | 17, 965, 1089, 1739, 1892, 2018, 2042, 2520, 2537 |
| Tru9I | TTAA | 9 cut(s) | 17, 965, 1089, 1739, 1892, 2018, 2042, 2520, 2537 |
| TscAI | CASTG | 7 cut(s) | 132, 378, 410, 1658, 1823, 1932, 2292 |
| TseFI | GTSAC | 4 cut(s) | 119, 250, 397, 658 |
| Tsp45I | GTSAC | 4 cut(s) | 119, 250, 397, 658 |
| TspGWI | ACGGA | 1 cut(s) | 807 |
| TspMI | CCCGGG | 2 cut(s) | 220, 238 |
| TspRI | CASTG | 7 cut(s) | 132, 378, 410, 1658, 1823, 1932, 2292 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2484 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 277 |
| VneI | GTGCAC | 1 cut(s) | 836 |
| XceI | RCATGY | 1 cut(s) | 929 |
| XmaI | CCCGGG | 2 cut(s) | 220, 238 |
| XmaJI | CCTAGG | 1 cut(s) | 1331 |
| XmiI | GTMKAC | 2 cut(s) | 1808, 1978 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1311, 1865 |
| XspI | CTAG | 4 cut(s) | 69, 90, 348, 1332 |
| ZraI | GACGTC | 1 cut(s) | 303 |
| ZrmI | AGTACT | 1 cut(s) | 763 |
| Zsp2I | ATGCAT | 1 cut(s) | 1076 |