pycom13g18670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000158
Physical Location & Seq
Forward (+)
14734886 .. 14736234
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18670.8

Sequence Viewer

Length: 972 bp
ATGAGACATTTGACATGGCATATTTCCGAGCATGATCGATCTATATGTTTATATTCTATTTTTCTGGGAAGTATACAGGTTTTACGGCGAGGGGTTAGAACTTTGTTTATGAAATGGTTTTTGAAAAACTTTGTTTTTGCCCACTCACACTTTTTGTTTTGCGCCCCTCCAGGTTCTAGTTGGCTAGCACTTGTGGTGGCTCCCCAGAGGATTTTCCTAGCATATCTGACAGATTATCACCAGTGTAGGACCACCTTTGGGTGTGTTTTTGTAATGTTGTTTCTCCCGGACTGCATTAGGTCTTCGTGCTCTGAACTTTGTTTTCACACTTATGCTTGCACATGTATGTTTCTATGCTGTGTATACTTTCGCACTATGCACATGGTTACGTCACTTCCACGTGACGGCCAGCATGCCCTGATCTCGGTCGGGGTGTGTCAAGTTGGGGGCGAGAGCATTTCCAGGATGGATGACCCACTGGGAAGTTCTCGTTGTGTTACGGTGGAGTCAAGCCCGGGATGTGGTGGGGGCCTGGGCTGGGATGTGACAATTTGGTATCATAGTCAATCCCTAGCCGGAAGTGTGCCGACGAGGACGTCGGTGGATCATGTAAGCCTTATATGTATATTCTCATCTCTACCTAGCACGAGGCCTTTGGGGAGCTCACTGGGTTCGGATTCCACCGAAACTCCAAAGTTAAGCGAGTTGGGGGTGAGAAAACAAAACCGTGAAGGCGTGGTCGGGGCCCAAAACGAACAATATCGTGCTACGGTGGAGTCAAGCCAGGGATGTGGTGAGGACTCGGGCCGGGATAAAAAATTAACTTTATTTTTATTTTTTTTTGTAAAGTTGTCGAATTATACTGTACATATTTTTCACTACGGTCTCCGTGATGAGCTGCATTGCTCGGAAAATACGGGGGAACTTCAACTAAATGACATGCAAATACAACAACATCTGGCCCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

36.24

Weight (kDa)

6.92

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 595
AatII GACGTC 1 cut(s) 599
AccI GTMKAC 2 cut(s) 73, 363
AclWI GGATC 1 cut(s) 612
AcoI YGGCCR 1 cut(s) 406
AcvI CACGTG 1 cut(s) 401
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 1 cut(s) 867
AfiI CCNNNNNNNGG 5 cut(s) 258, 404, 424, 521, 538
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 2 cut(s) 124, 929
AjnI CCWGG 4 cut(s) 169, 461, 531, 783
AluBI AGCT 2 cut(s) 663, 898
AluI AGCT 2 cut(s) 663, 898
Alw21I GWGCWC 2 cut(s) 311, 665
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 1 cut(s) 612
Ama87I CYCGRG 2 cut(s) 514, 802
AoxI GGCC 6 cut(s) 406, 529, 650, 744, 805, 960
ApaI GGGCCC 1 cut(s) 748
ApeKI GCWGC 1 cut(s) 898
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 6 cut(s) 249, 529, 744, 745, 805, 961
AsuC2I CCSGG 4 cut(s) 287, 515, 516, 809
AsuHPI GGTGA 3 cut(s) 230, 724, 806
AsuNHI GCTAGC 1 cut(s) 184
AvaI CYCGRG 2 cut(s) 514, 802
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 748
BanII GRGCYC 2 cut(s) 665, 748
BauI CACGAG 1 cut(s) 646
BbrPI CACGTG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 311, 665
BbvI GCAGC 1 cut(s) 885
BccI CCATC 1 cut(s) 460
BceAI ACGGC 2 cut(s) 101, 421
BciT130I CCWGG 4 cut(s) 171, 463, 533, 785
BcnI CCSGG 4 cut(s) 287, 515, 516, 809
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 5 cut(s) 177, 185, 218, 572, 642
BisI GCNGC 1 cut(s) 899
BlsI GCNGC 1 cut(s) 900
Bme1390I CCNGG 8 cut(s) 171, 287, 463, 515, 516, 533, 785, 809
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 2 cut(s) 514, 802
BmgT120I GGNCC 6 cut(s) 249, 529, 744, 745, 805, 961
BmiI GGNNCC 4 cut(s) 201, 530, 745, 746
BmrFI CCNGG 8 cut(s) 171, 287, 463, 515, 516, 533, 785, 809
BmrI ACTGGG 2 cut(s) 488, 677
BmtI GCTAGC 1 cut(s) 188
BmuI ACTGGG 2 cut(s) 488, 677
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 153
BpuMI CCSGG 4 cut(s) 287, 515, 516, 809
Bsa29I ATCGAT 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 514, 532, 784
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 404, 424, 521, 538
Bse1I ACTGG 3 cut(s) 241, 483, 672
Bse3DI GCAATG 1 cut(s) 901
BseBI CCWGG 4 cut(s) 171, 463, 533, 785
BseCI ATCGAT 1 cut(s) 37
BseDI CCNNGG 3 cut(s) 514, 532, 784
BseGI GGATG 5 cut(s) 471, 475, 524, 547, 794
BseLI CCNNNNNNNGG 5 cut(s) 258, 404, 424, 521, 538
BseMI GCAATG 1 cut(s) 901
BseNI ACTGG 3 cut(s) 241, 483, 672
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 1 cut(s) 885
BseYI CCCAGC 1 cut(s) 537
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 6 cut(s) 408, 531, 652, 746, 807, 962
BshVI ATCGAT 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 311, 665
BsiHKCI CYCGRG 2 cut(s) 514, 802
BsiSI CCGG 4 cut(s) 287, 515, 576, 808
BslI CCNNNNNNNGG 5 cut(s) 258, 404, 424, 521, 538
BsmAI GTCTC 1 cut(s) 890
BsnI GGCC 6 cut(s) 408, 531, 652, 746, 807, 962
Bso31I GGTCTC 1 cut(s) 890
BsoBI CYCGRG 2 cut(s) 514, 802
Bsp120I GGGCCC 1 cut(s) 744
Bsp1286I GDGCHC 3 cut(s) 311, 665, 748
Bsp1407I TGTACA 1 cut(s) 865
Bsp143I GATC 4 cut(s) 34, 38, 420, 604
BspANI GGCC 6 cut(s) 408, 531, 652, 746, 807, 962
BspDI ATCGAT 1 cut(s) 37
BspLI GGNNCC 4 cut(s) 201, 530, 745, 746
BspOI GCTAGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 901
BsrGI TGTACA 1 cut(s) 865
BsrI ACTGG 3 cut(s) 241, 483, 672
BssECI CCNNGG 3 cut(s) 514, 532, 784
BssMI GATC 4 cut(s) 34, 38, 420, 604
BssNAI GTATAC 2 cut(s) 74, 364
BssNI GRCGYC 1 cut(s) 596
BssSI CACGAG 1 cut(s) 646
Bst1107I GTATAC 2 cut(s) 74, 364
Bst2BI CACGAG 1 cut(s) 646
Bst2UI CCWGG 4 cut(s) 171, 463, 533, 785
Bst4CI ACNGT 5 cut(s) 502, 728, 772, 865, 884
BstACI GRCGYC 1 cut(s) 596
BstAUI TGTACA 1 cut(s) 865
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 4 cut(s) 186, 337, 410, 414
BstF5I GGATG 5 cut(s) 471, 475, 524, 547, 794
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 4 cut(s) 37, 41, 423, 607
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 4 cut(s) 34, 38, 420, 604
BstMCI CGRYCG 1 cut(s) 429
BstNI CCWGG 4 cut(s) 171, 463, 533, 785
BstNSI RCATGY 3 cut(s) 345, 416, 943
BstSCI CCNGG 8 cut(s) 169, 285, 461, 513, 514, 531, 783, 807
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 885
BstV2I GAAGAC 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 791
BstZ17I GTATAC 2 cut(s) 74, 364
Bsu15I ATCGAT 1 cut(s) 37
BsuRI GGCC 6 cut(s) 408, 531, 652, 746, 807, 962
BsuTUI ATCGAT 1 cut(s) 37
BtsCI GGATG 5 cut(s) 471, 475, 524, 547, 794
BtsIMutI CAGTG 3 cut(s) 248, 476, 665
Cac8I GCNNGC 4 cut(s) 186, 337, 410, 414
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 6 cut(s) 249, 529, 744, 745, 805, 961
Cfr9I CCCGGG 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 37
Csp6I GTAC 1 cut(s) 866
CviAII CATG 7 cut(s) 15, 32, 342, 382, 413, 608, 940
CviQI GTAC 1 cut(s) 866
DpnI GATC 4 cut(s) 36, 40, 422, 606
DpnII GATC 4 cut(s) 34, 38, 420, 604
DrdI GACNNNNNNGTC 1 cut(s) 595
DseDI GACNNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 652
Eco24I GRGCYC 2 cut(s) 665, 748
Eco31I GGTCTC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 401
Eco88I CYCGRG 2 cut(s) 514, 802
EcoICRI GAGCTC 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 529, 744
EcoRII CCWGG 4 cut(s) 169, 461, 531, 783
EcoT38I GRGCYC 2 cut(s) 665, 748
FaeI CATG 7 cut(s) 18, 35, 345, 385, 416, 611, 943
FatI CATG 7 cut(s) 14, 31, 341, 381, 412, 607, 939
FblI GTMKAC 2 cut(s) 73, 363
Fnu4HI GCNGC 1 cut(s) 899
FokI GGATG 5 cut(s) 478, 482, 531, 554, 801
FriOI GRGCYC 2 cut(s) 665, 748
Fsp4HI GCNGC 1 cut(s) 899
FspBI CTAG 5 cut(s) 177, 185, 218, 572, 642
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 899
GsaI CCCAGC 1 cut(s) 541
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 6 cut(s) 408, 531, 652, 746, 807, 962
HapII CCGG 4 cut(s) 287, 515, 576, 808
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 7 cut(s) 18, 35, 345, 385, 416, 611, 943
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 4 cut(s) 506, 677, 776, 800
HpaII CCGG 4 cut(s) 287, 515, 576, 808
HphI GGTGA 3 cut(s) 230, 724, 806
Hpy166II GTNNAC 2 cut(s) 74, 364
Hpy188I TCNGA 5 cut(s) 28, 228, 313, 676, 910
Hpy8I GTNNAC 2 cut(s) 74, 364
Hpy99I CGWCG 2 cut(s) 592, 601
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 5 cut(s) 502, 728, 772, 865, 884
HpyCH4IV ACGT 3 cut(s) 389, 400, 596
HpyCH4V TGCA 5 cut(s) 294, 339, 379, 901, 943
HpySE526I ACGT 3 cut(s) 389, 400, 596
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 7 cut(s) 18, 35, 345, 385, 416, 611, 943
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 4 cut(s) 34, 38, 420, 604
LmnI GCTCC 2 cut(s) 205, 660
Lsp1109I GCAGC 1 cut(s) 885
MaeI CTAG 5 cut(s) 177, 185, 218, 572, 642
MaeII ACGT 3 cut(s) 389, 400, 596
MaeIII GTNAC 5 cut(s) 385, 390, 401, 496, 544
MalI GATC 4 cut(s) 36, 40, 422, 606
MboI GATC 4 cut(s) 34, 38, 420, 604
MboII GAAGA 1 cut(s) 294
MhlI GDGCHC 3 cut(s) 311, 665, 748
MluCI AATT 3 cut(s) 549, 818, 856
MlyI GAGTC 3 cut(s) 515, 785, 794
MnlI CCTC 6 cut(s) 83, 177, 201, 585, 642, 790
MseI TTAA 2 cut(s) 698, 821
MslI CAYNNNNRTG 2 cut(s) 330, 344
MspI CCGG 4 cut(s) 287, 515, 576, 808
MspR9I CCNGG 8 cut(s) 171, 287, 463, 515, 516, 533, 785, 809
MvaI CCWGG 4 cut(s) 171, 463, 533, 785
NciI CCSGG 4 cut(s) 287, 515, 516, 809
NdeII GATC 4 cut(s) 34, 38, 420, 604
NheI GCTAGC 1 cut(s) 184
NlaIII CATG 7 cut(s) 18, 35, 345, 385, 416, 611, 943
NlaIV GGNNCC 4 cut(s) 201, 530, 745, 746
NmuCI GTSAC 3 cut(s) 390, 401, 544
NspI RCATGY 3 cut(s) 345, 416, 943
PaeI GCATGC 1 cut(s) 416
PceI AGGCCT 1 cut(s) 652
PciI ACATGT 1 cut(s) 341
PfeI GAWTC 1 cut(s) 677
PfoI TCCNGGA 2 cut(s) 285, 461
PkrI GCNGC 1 cut(s) 900
PleI GAGTC 3 cut(s) 514, 784, 794
PmaCI CACGTG 1 cut(s) 401
PmlI CACGTG 1 cut(s) 401
PpsI GAGTC 3 cut(s) 514, 784, 794
Ppu21I YACGTR 1 cut(s) 401
PscI ACATGT 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 4 cut(s) 169, 461, 531, 783
PspCI CACGTG 1 cut(s) 401
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 4 cut(s) 169, 461, 531, 783
PspN4I GGNNCC 4 cut(s) 201, 530, 745, 746
PspOMI GGGCCC 1 cut(s) 744
PspPI GGNCC 6 cut(s) 249, 529, 744, 745, 805, 961
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
RseI CAYNNNNRTG 2 cut(s) 330, 344
SacI GAGCTC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 698, 821
SatI GCNGC 1 cut(s) 899
Sau3AI GATC 4 cut(s) 34, 38, 420, 604
Sau96I GGNCC 6 cut(s) 249, 529, 744, 745, 805, 961
SchI GAGTC 3 cut(s) 515, 785, 794
ScrFI CCNGG 8 cut(s) 171, 287, 463, 515, 516, 533, 785, 809
SduI GDGCHC 3 cut(s) 311, 665, 748
SinI GGWCC 1 cut(s) 249
SmaI CCCGGG 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 330, 344
SphI GCATGC 1 cut(s) 416
Sse9I AATT 3 cut(s) 549, 818, 856
SseBI AGGCCT 1 cut(s) 652
SspMI CTAG 5 cut(s) 177, 185, 218, 572, 642
SstI GAGCTC 1 cut(s) 665
StuI AGGCCT 1 cut(s) 652
StyD4I CCNGG 8 cut(s) 169, 285, 461, 513, 514, 531, 783, 807
TaaI ACNGT 5 cut(s) 502, 728, 772, 865, 884
TaiI ACGT 3 cut(s) 392, 403, 599
TaqI TCGA 2 cut(s) 37, 854
TaqII GACCGA 1 cut(s) 415
TasI AATT 3 cut(s) 549, 818, 856
TatI WGTACW 1 cut(s) 865
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 2 cut(s) 698, 821
Tru9I TTAA 2 cut(s) 698, 821
TscAI CASTG 3 cut(s) 248, 483, 672
TseFI GTSAC 3 cut(s) 390, 401, 544
TseI GCWGC 1 cut(s) 898
Tsp45I GTSAC 3 cut(s) 390, 401, 544
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 878
TspMI CCCGGG 1 cut(s) 514
TspRI CASTG 3 cut(s) 248, 483, 672
VpaK11BI GGWCC 1 cut(s) 249
XceI RCATGY 3 cut(s) 345, 416, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XmaI CCCGGG 1 cut(s) 514
XmiI GTMKAC 2 cut(s) 73, 363
XspI CTAG 5 cut(s) 177, 185, 218, 572, 642
ZraI GACGTC 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.