pycom808g00290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000808
OG0000158
Physical Location & Seq
Forward (+)
168807 .. 170309
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom808g00290.7

Sequence Viewer

Length: 1197 bp
ATGGTTGTAACGGGGCTAAGGTATTGGCTAACAAAGAAAGGTAAGGATAAACAAAAAATTCACTTTGGAATGCAGAAATCAACTCTAAACACGAAGGGAAGATTCACACAACACTTAGGGCCAGATTCAAACTTTTGGACCTTTTCTTCAACAACCAATACTTATGAGTTCATTCTCACTTATTTCTCAACTCTTCTCCTTTCTTTTCTCAACTTTTTCTTCTTTTTTCTTTCTTTTTTTTTTCGTGCCTTTTCTTTTTTTTTTTTTGGCACACTACAAGTACAACCTTCGAAATCTCCAATGAAAAACCTTCCCCCACACTTTCATATTGCAAATATAATCATGGTTTCAAAGTCTCCTCTAGCCAAAACGAATTTAGTTCCTCATAAACGCTCCAACAATCCTGTCACATCCTGGCCCGGGGCGGAACACTTCCCGGGCCCGCTCCACTACCGTAGCACGATATTGTCCTCTTTGGGCTTACCATTCCCTCACGGTTTTGTTTTTGGGAACTCACGAGCAACTTCCCAGTGGGTCACCCATCATGGGATTGCTCTAGCCCCCTTCTCGCTTAACTTCGGAGTTCCTACGGAACCCGAAGTCAATGAGCTCCCAAAAGGCCTCGTGCTAGGTAGGGATGGGAATATACATATAAGGATCACTCCCCTGGGCGATGTGGGATGTCACAAATCCAATGTCTTAAATGGCAAGCACGACTCTAGGTGGCTCTTCCTTCCTTCCTTGTTGCGGCACAATGGGGATTTGTGTTGTGAGTTATGTTATAGGGCAGGGATGCGGCACCAATGTCATGATTGGAGAGGGATTGATATGATACAAATTCATGTATTAAAAGGATTACACAACCCACTCCAACAAGGATGCAACCTGAGGCAGATTCTAGAGTTTCTGGAAGGGATGTTTCAGCACCTTTTTAGGAGAAGAGATAGGCCTTCTAGAACCAAGTTTTTATGTGGAATAAGATTAGATAAGATTGTTTGGATAATGTTCCTTCTTGTAGCTGATTCCTTATCTTCAATGTTTCCAAATTTGTTTCTCCAGATATTAAGCACATTCCTAGCCTCTCTTGATCTTCAAATTCGTCCATCCACTTTGCTCCATGCATGTGCAATCCATTCCAAGCCCAAAACTTCTCTAAAATGTTCCAAATTGCACTTTCTTGCCAACTTTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

45.56

Weight (kDa)

10.01

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 798
AccBSI CCGCTC 1 cut(s) 445
AciI CCGC 4 cut(s) 425, 443, 748, 796
AclWI GGATC 1 cut(s) 665
AcsI RAATTY 5 cut(s) 57, 373, 837, 1045, 1095
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 420, 546, 747
AgsI TTSAA 5 cut(s) 129, 150, 351, 1035, 1094
AjnI CCWGG 2 cut(s) 413, 666
AluBI AGCT 2 cut(s) 610, 1019
AluI AGCT 2 cut(s) 610, 1019
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 1 cut(s) 665
Ama87I CYCGRG 2 cut(s) 419, 436
AoxI GGCC 5 cut(s) 119, 416, 439, 619, 947
ApaI GGGCCC 1 cut(s) 443
ApoI RAATTY 5 cut(s) 57, 373, 837, 1045, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 681, 713
AspS9I GGNCC 5 cut(s) 119, 138, 417, 439, 440
AsuC2I CCSGG 4 cut(s) 420, 421, 437, 438
AsuHPI GGTGA 1 cut(s) 529
AsuII TTCGAA 1 cut(s) 290
AvaI CYCGRG 2 cut(s) 419, 436
AvaII GGWCC 1 cut(s) 138
AxyI CCTNAGG 1 cut(s) 887
BaeGI GKGCMC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 798
BanII GRGCYC 2 cut(s) 443, 612
BauI CACGAG 2 cut(s) 516, 623
Bbv12I GWGCWC 1 cut(s) 612
BccI CCATC 3 cut(s) 549, 632, 1111
BciT130I CCWGG 2 cut(s) 415, 668
BcnI CCSGG 4 cut(s) 420, 421, 437, 438
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 7 cut(s) 362, 557, 629, 720, 899, 954, 1076
BisI GCNGC 2 cut(s) 749, 797
BlsI GCNGC 2 cut(s) 750, 798
Bme1390I CCNGG 6 cut(s) 415, 420, 421, 437, 438, 668
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 2 cut(s) 419, 436
BmgT120I GGNCC 5 cut(s) 119, 138, 417, 439, 440
BmiI GGNNCC 3 cut(s) 441, 594, 800
BmrFI CCNGG 6 cut(s) 415, 420, 421, 437, 438, 668
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 2 cut(s) 783, 869
BmuI ACTGGG 1 cut(s) 523
BpmI CTGGAG 1 cut(s) 1040
Bpu10I CCTNAGC 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 290
BpuMI CCSGG 4 cut(s) 420, 421, 437, 438
BsaJI CCNNGG 5 cut(s) 419, 420, 436, 666, 667
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 546, 747
Bse1I ACTGG 1 cut(s) 529
Bse21I CCTNAGG 1 cut(s) 887
BseBI CCWGG 2 cut(s) 415, 668
BseDI CCNNGG 5 cut(s) 419, 420, 436, 666, 667
BseGI GGATG 7 cut(s) 410, 643, 686, 798, 884, 921, 1103
BseLI CCNNNNNNNGG 3 cut(s) 420, 546, 747
BseMII CTCAG 1 cut(s) 878
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 443
BshFI GGCC 5 cut(s) 121, 418, 441, 621, 949
BshNI GGYRCC 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 612
BsiHKCI CYCGRG 2 cut(s) 419, 436
BsiSI CCGG 2 cut(s) 420, 437
BslI CCNNNNNNNGG 3 cut(s) 420, 546, 747
BsmAI GTCTC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 5 cut(s) 121, 418, 441, 621, 949
BsoBI CYCGRG 2 cut(s) 419, 436
Bsp119I TTCGAA 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 439
Bsp1286I GDGCHC 2 cut(s) 443, 612
Bsp143I GATC 2 cut(s) 657, 1087
BspACI CCGC 4 cut(s) 425, 443, 748, 796
BspANI GGCC 5 cut(s) 121, 418, 441, 621, 949
BspCNI CTCAG 1 cut(s) 879
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 3 cut(s) 441, 594, 800
BspPI GGATC 1 cut(s) 665
BspQI GCTCTTC 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 798
BsrBI CCGCTC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 5 cut(s) 419, 420, 436, 666, 667
BssMI GATC 2 cut(s) 657, 1087
BssSI CACGAG 2 cut(s) 516, 623
Bst2BI CACGAG 2 cut(s) 516, 623
Bst2UI CCWGG 2 cut(s) 415, 668
Bst4CI ACNGT 2 cut(s) 455, 497
Bst6I CTCTTC 3 cut(s) 198, 734, 934
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 443, 710
BstDEI CTNAG 3 cut(s) 17, 115, 887
BstEII GGTNACC 1 cut(s) 535
BstF5I GGATG 7 cut(s) 410, 643, 686, 798, 884, 921, 1103
BstKTI GATC 2 cut(s) 660, 1090
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 2 cut(s) 657, 1087
BstNI CCWGG 2 cut(s) 415, 668
BstNSI RCATGY 1 cut(s) 1125
BstPI GGTNACC 1 cut(s) 535
BstSCI CCNGG 6 cut(s) 413, 418, 419, 435, 436, 666
BstSLI GKGCMC 1 cut(s) 443
Bsu36I CCTNAGG 1 cut(s) 887
BsuRI GGCC 5 cut(s) 121, 418, 441, 621, 949
BtgZI GCGATG 1 cut(s) 687
BtsCI GGATG 7 cut(s) 410, 643, 686, 798, 884, 921, 1103
BtsIMutI CAGTG 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 443, 710
CciI TCATGA 1 cut(s) 808
Cfr13I GGNCC 5 cut(s) 119, 138, 417, 439, 440
Cfr9I CCCGGG 2 cut(s) 419, 436
Csp6I GTAC 1 cut(s) 281
CviAII CATG 6 cut(s) 343, 545, 809, 842, 1118, 1122
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 3 cut(s) 17, 115, 887
DpnI GATC 2 cut(s) 659, 1089
DpnII GATC 2 cut(s) 657, 1087
Eam1104I CTCTTC 3 cut(s) 198, 734, 934
EarI CTCTTC 3 cut(s) 198, 734, 934
EciI GGCGGA 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 610
Eco147I AGGCCT 2 cut(s) 621, 949
Eco24I GRGCYC 2 cut(s) 443, 612
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 610
Eco81I CCTNAGG 1 cut(s) 887
Eco88I CYCGRG 2 cut(s) 419, 436
Eco91I GGTNACC 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 610
EcoO65I GGTNACC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 413, 666
EcoT22I ATGCAT 1 cut(s) 1123
EcoT38I GRGCYC 2 cut(s) 443, 612
FaeI CATG 6 cut(s) 346, 548, 812, 845, 1121, 1125
FatI CATG 6 cut(s) 342, 544, 808, 841, 1117, 1121
FauI CCCGC 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 749, 797
FokI GGATG 7 cut(s) 397, 650, 693, 805, 891, 928, 1090
FriOI GRGCYC 2 cut(s) 443, 612
Fsp4HI GCNGC 2 cut(s) 749, 797
FspBI CTAG 7 cut(s) 362, 557, 629, 720, 899, 954, 1076
GluI GCNGC 2 cut(s) 749, 797
GsuI CTGGAG 1 cut(s) 1040
HaeIII GGCC 5 cut(s) 121, 418, 441, 621, 949
HapII CCGG 2 cut(s) 420, 437
Hin1II CATG 6 cut(s) 346, 548, 812, 845, 1121, 1125
HinfI GANTC 5 cut(s) 102, 125, 716, 895, 1022
HpaII CCGG 2 cut(s) 420, 437
HphI GGTGA 1 cut(s) 529
Hpy188I TCNGA 1 cut(s) 581
Hpy188III TCNNGA 7 cut(s) 516, 809, 899, 908, 954, 1057, 1085
HpyAV CCTTC 9 cut(s) 88, 297, 320, 574, 743, 747, 905, 960, 1019
HpyCH4III ACNGT 2 cut(s) 455, 497
HpyCH4V TGCA 6 cut(s) 73, 332, 882, 1121, 1127, 1171
HpyF3I CTNAG 3 cut(s) 17, 115, 887
Hsp92II CATG 6 cut(s) 346, 548, 812, 845, 1121, 1125
Kzo9I GATC 2 cut(s) 657, 1087
LguI GCTCTTC 1 cut(s) 734
LmnI GCTCC 4 cut(s) 398, 450, 615, 1119
LweI GCATC 2 cut(s) 783, 869
MaeI CTAG 7 cut(s) 362, 557, 629, 720, 899, 954, 1076
MaeIII GTNAC 4 cut(s) 7, 406, 535, 683
MalI GATC 2 cut(s) 659, 1089
MbiI CCGCTC 1 cut(s) 445
MboI GATC 2 cut(s) 657, 1087
MboII GAAGA 8 cut(s) 111, 138, 185, 211, 721, 951, 1023, 1082
MfeI CAATTG 1 cut(s) 1192
MhlI GDGCHC 2 cut(s) 443, 612
MluCI AATT 7 cut(s) 57, 373, 837, 1045, 1095, 1166, 1192
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 420, 895
MnlI CCTC 8 cut(s) 369, 393, 481, 501, 632, 812, 882, 1090
Mph1103I ATGCAT 1 cut(s) 1123
MseI TTAA 4 cut(s) 573, 701, 848, 1064
MslI CAYNNNNRTG 1 cut(s) 1122
MspI CCGG 2 cut(s) 420, 437
MspR9I CCNGG 6 cut(s) 415, 420, 421, 437, 438, 668
MunI CAATTG 1 cut(s) 1192
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 2 cut(s) 415, 668
NciI CCSGG 4 cut(s) 420, 421, 437, 438
NdeII GATC 2 cut(s) 657, 1087
NlaIII CATG 6 cut(s) 346, 548, 812, 845, 1121, 1125
NlaIV GGNNCC 3 cut(s) 441, 594, 800
NmuCI GTSAC 3 cut(s) 406, 535, 683
NsiI ATGCAT 1 cut(s) 1123
NspI RCATGY 1 cut(s) 1125
NspV TTCGAA 1 cut(s) 290
PagI TCATGA 1 cut(s) 808
PasI CCCWGGG 1 cut(s) 667
PceI AGGCCT 2 cut(s) 621, 949
PciSI GCTCTTC 1 cut(s) 734
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 4 cut(s) 102, 125, 895, 1022
PkrI GCNGC 2 cut(s) 750, 798
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
Psp124BI GAGCTC 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 413, 666
PspEI GGTNACC 1 cut(s) 535
PspGI CCWGG 2 cut(s) 413, 666
PspN4I GGNNCC 3 cut(s) 441, 594, 800
PspOMI GGGCCC 1 cut(s) 439
PspPI GGNCC 5 cut(s) 119, 138, 417, 439, 440
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 1122
SacI GAGCTC 1 cut(s) 612
SapI GCTCTTC 1 cut(s) 734
SaqAI TTAA 4 cut(s) 573, 701, 848, 1064
SatI GCNGC 2 cut(s) 749, 797
Sau3AI GATC 2 cut(s) 657, 1087
Sau96I GGNCC 5 cut(s) 119, 138, 417, 439, 440
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 6 cut(s) 415, 420, 421, 437, 438, 668
SduI GDGCHC 2 cut(s) 443, 612
SfaNI GCATC 2 cut(s) 783, 869
SfuI TTCGAA 1 cut(s) 290
SinI GGWCC 1 cut(s) 138
SmaI CCCGGG 2 cut(s) 421, 438
SmiMI CAYNNNNRTG 1 cut(s) 1122
Sse9I AATT 7 cut(s) 57, 373, 837, 1045, 1095, 1166, 1192
SseBI AGGCCT 2 cut(s) 621, 949
SsiI CCGC 4 cut(s) 425, 443, 748, 796
SspMI CTAG 7 cut(s) 362, 557, 629, 720, 899, 954, 1076
SstI GAGCTC 1 cut(s) 612
StuI AGGCCT 2 cut(s) 621, 949
StyD4I CCNGG 6 cut(s) 413, 418, 419, 435, 436, 666
TaaI ACNGT 2 cut(s) 455, 497
TaqI TCGA 1 cut(s) 290
TasI AATT 7 cut(s) 57, 373, 837, 1045, 1095, 1166, 1192
TatI WGTACW 1 cut(s) 280
TauI GCSGC 2 cut(s) 751, 799
TfiI GAWTC 4 cut(s) 102, 125, 895, 1022
Tru1I TTAA 4 cut(s) 573, 701, 848, 1064
Tru9I TTAA 4 cut(s) 573, 701, 848, 1064
TscAI CASTG 1 cut(s) 536
TseFI GTSAC 3 cut(s) 406, 535, 683
Tsp45I GTSAC 3 cut(s) 406, 535, 683
TspDTI ATGAA 4 cut(s) 160, 314, 317, 830
TspGWI ACGGA 1 cut(s) 605
TspMI CCCGGG 2 cut(s) 419, 436
TspRI CASTG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 5 cut(s) 57, 373, 837, 1045, 1095
XbaI TCTAGA 2 cut(s) 898, 953
XceI RCATGY 1 cut(s) 1125
XmaI CCCGGG 2 cut(s) 419, 436
XspI CTAG 7 cut(s) 362, 557, 629, 720, 899, 954, 1076
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.