pycom12g16710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000158
Physical Location & Seq
Forward (+)
19029573 .. 19031475
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16710.7

Sequence Viewer

Length: 1191 bp
ATGAACATGCTTCATGCACTGCTTTGGACTGCTAGACTTAATGCCCAATTAGGAATGTATTGCAGCATCATAATCTTCTTAAAATTCATGGGGAATGTTTGGAGATATTTTCATTCAAATATGGCTATGCTGTTACCAAAATCCATTAGAACATTTTTCTTAATATCCAGAAAAACATTAAAGAATAACCTTTCAGAAATAATAAAACTTATTTTTGTGTCATTTTTGTTGAACCGTAAGATTTGTAAAATTTATGTAGGACATTTTAGAGATGTTTTAGAGAATACAAATAGTAAAAATAAAATCTATAAATTGGATTTAAAAAATTTAATTTTTATATTAAATCTTATCATTAAAGAGATAATTATTGATAATAAAAAGGAACACTTTACATATCAAGAATTTGTTAAAGTTAATAGTCAAGTTAGGATAAAGATTTTTTTTTTTTTTTTTTTTGGGAATGTTGTGGGTTTTCAACTTTTTATTAAAACGCTTTGTATTTTGATTAAGGTGCTTCCATCTTTATCCAAGTCATTTTTTAATTTCCAACTCATCATTTTAACATGTAACATCCCACATCGTCTAGGGGAGATCGATCATGTAAGCTTTATATGTATATTCTCATCTCTATCTAGTACAAGGCTTTTTGGGACGAGTTCACGCGAGAACAATCCCAGGATGGGTGACCCACTGGGAAGTTCTCGTGTGAGTTCTCATAAACAAACCGTGAGGGTATGGTCGGGGCTCAAGCGGACAATATCGTGCTACGGTGCAGTCGAGCCCGGAATGTGGCGGGGGCCCGGGCCGGGATGTGACAATTTAGTATCAGAGCCAATCCCTGGTTGGATGTGTGCCGACGAGGATGTCAGGCCCTTGAGGGGGGGGTCGTTATGTGACAATTTGGTATCAGAGCCAATCCCTGGTCTGATGTGTGTCGACGAGGACGTCGGGCCCCTGAGGGGGATGAATTGTAACATCCAACATCGCCCAGGGGAGAGCATCTTGGCTTTCGGGACGAGTTTGCACGAGAGCAATCCCAGGAAAGTTGACCCACTGGGAAGTTCTCGTGTGAGTTCCCAGAAACAAAACCTTGAGGGCGTGGTCGGGGCCCAAAGCGGACAATATCGTGTTACGGTGGATTTTGAAAAGAAAATCAGTTTGAAAATTTTGATTGAGTCATTATCCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

44.97

Weight (kDa)

9.53

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 863, 944
AatII GACGTC 1 cut(s) 948
AccB7I CCANNNNNTGG 2 cut(s) 839, 920
AccI GTMKAC 1 cut(s) 936
AccII CGCG 1 cut(s) 663
AciI CCGC 3 cut(s) 751, 793, 1116
AcsI RAATTY 5 cut(s) 83, 249, 325, 401, 1164
AcyI GRCGYC 1 cut(s) 945
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 9 cut(s) 680, 789, 806, 839, 878, 879, 920, 959, 960
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 5 cut(s) 117, 232, 476, 1145, 1162
AjnI CCWGG 5 cut(s) 674, 838, 919, 988, 1037
AluBI AGCT 1 cut(s) 606
AluI AGCT 1 cut(s) 606
Ama87I CYCGRG 1 cut(s) 800
AoxI GGCC 5 cut(s) 797, 803, 869, 950, 1107
ApaI GGGCCC 3 cut(s) 801, 954, 1111
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 5 cut(s) 83, 249, 325, 401, 1164
AspS9I GGNCC 8 cut(s) 797, 798, 803, 870, 950, 951, 1107, 1108
AsuC2I CCSGG 4 cut(s) 783, 801, 802, 807
AsuHPI GGTGA 1 cut(s) 695
AvaI CYCGRG 1 cut(s) 800
AxyI CCTNAGG 1 cut(s) 956
BaeGI GKGCMC 3 cut(s) 801, 954, 1111
BanII GRGCYC 5 cut(s) 747, 783, 801, 954, 1111
BauI CACGAG 3 cut(s) 702, 1025, 1065
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 526, 673
BciT130I CCWGG 5 cut(s) 676, 840, 921, 990, 1039
BcnI CCSGG 4 cut(s) 783, 801, 802, 807
BfaI CTAG 3 cut(s) 33, 584, 633
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 9 cut(s) 676, 783, 801, 802, 807, 840, 921, 990, 1039
BmeT110I CYCGRG 1 cut(s) 800
BmgT120I GGNCC 8 cut(s) 797, 798, 803, 870, 950, 951, 1107, 1108
BmiI GGNNCC 6 cut(s) 798, 799, 952, 953, 1108, 1109
BmrFI CCNGG 9 cut(s) 676, 783, 801, 802, 807, 840, 921, 990, 1039
BmrI ACTGGG 2 cut(s) 701, 1064
BmsI GCATC 2 cut(s) 75, 1008
BmuI ACTGGG 2 cut(s) 701, 1064
BpuEI CTTGAG 3 cut(s) 731, 895, 1112
BpuMI CCSGG 4 cut(s) 783, 801, 802, 807
Bsa29I ATCGAT 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 945
BsaJI CCNNGG 7 cut(s) 674, 800, 838, 919, 988, 989, 1037
Bsc4I CCNNNNNNNGG 9 cut(s) 680, 789, 806, 839, 878, 879, 920, 959, 960
Bse1I ACTGG 2 cut(s) 696, 1059
Bse21I CCTNAGG 1 cut(s) 956
BseBI CCWGG 5 cut(s) 676, 840, 921, 990, 1039
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 7 cut(s) 674, 800, 838, 919, 988, 989, 1037
BseGI GGATG 7 cut(s) 570, 684, 815, 852, 868, 969, 975
BseLI CCNNNNNNNGG 9 cut(s) 680, 789, 806, 839, 878, 879, 920, 959, 960
BseMII CTCAG 1 cut(s) 947
BseNI ACTGG 2 cut(s) 696, 1059
BseSI GKGCMC 3 cut(s) 801, 954, 1111
BseXI GCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 663
BshFI GGCC 5 cut(s) 799, 805, 871, 952, 1109
BshVI ATCGAT 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 800
BsiSI CCGG 3 cut(s) 783, 801, 806
BslFI GGGAC 2 cut(s) 664, 1027
BslI CCNNNNNNNGG 9 cut(s) 680, 789, 806, 839, 878, 879, 920, 959, 960
BsmFI GGGAC 2 cut(s) 664, 1027
BsnI GGCC 5 cut(s) 799, 805, 871, 952, 1109
BsoBI CYCGRG 1 cut(s) 800
Bsp120I GGGCCC 3 cut(s) 797, 950, 1107
Bsp1286I GDGCHC 5 cut(s) 747, 783, 801, 954, 1111
Bsp143I GATC 2 cut(s) 591, 595
BspACI CCGC 3 cut(s) 751, 793, 1116
BspANI GGCC 5 cut(s) 799, 805, 871, 952, 1109
BspCNI CTCAG 1 cut(s) 948
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 1 cut(s) 663
BspLI GGNNCC 6 cut(s) 798, 799, 952, 953, 1108, 1109
BsrI ACTGG 2 cut(s) 696, 1059
BssECI CCNNGG 7 cut(s) 674, 800, 838, 919, 988, 989, 1037
BssMI GATC 2 cut(s) 591, 595
BssNI GRCGYC 1 cut(s) 945
BssSI CACGAG 3 cut(s) 702, 1025, 1065
Bst2BI CACGAG 3 cut(s) 702, 1025, 1065
Bst2UI CCWGG 5 cut(s) 676, 840, 921, 990, 1039
Bst4CI ACNGT 4 cut(s) 236, 727, 770, 1135
BstACI GRCGYC 1 cut(s) 945
BstDEI CTNAG 1 cut(s) 956
BstEII GGTNACC 1 cut(s) 683
BstF5I GGATG 7 cut(s) 570, 684, 815, 852, 868, 969, 975
BstFNI CGCG 1 cut(s) 663
BstKTI GATC 2 cut(s) 594, 598
BstMBI GATC 2 cut(s) 591, 595
BstNI CCWGG 5 cut(s) 676, 840, 921, 990, 1039
BstNSI RCATGY 2 cut(s) 10, 567
BstPI GGTNACC 1 cut(s) 683
BstSCI CCNGG 9 cut(s) 674, 781, 799, 800, 805, 838, 919, 988, 1037
BstSLI GKGCMC 3 cut(s) 801, 954, 1111
BstUI CGCG 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 594
Bsu36I CCTNAGG 1 cut(s) 956
BsuRI GGCC 5 cut(s) 799, 805, 871, 952, 1109
BsuTUI ATCGAT 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 968
BtsCI GGATG 7 cut(s) 570, 684, 815, 852, 868, 969, 975
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 3 cut(s) 17, 689, 1052
Cfr13I GGNCC 8 cut(s) 797, 798, 803, 870, 950, 951, 1107, 1108
Cfr9I CCCGGG 1 cut(s) 800
ClaI ATCGAT 1 cut(s) 594
Csp6I GTAC 1 cut(s) 636
CviAII CATG 5 cut(s) 7, 14, 88, 564, 599
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 1 cut(s) 956
DpnI GATC 2 cut(s) 593, 597
DpnII GATC 2 cut(s) 591, 595
DraI TTTAAA 1 cut(s) 321
DrdI GACNNNNNNGTC 2 cut(s) 863, 944
DseDI GACNNNNNNGTC 2 cut(s) 863, 944
Eco24I GRGCYC 5 cut(s) 747, 783, 801, 954, 1111
Eco81I CCTNAGG 1 cut(s) 956
Eco88I CYCGRG 1 cut(s) 800
Eco91I GGTNACC 1 cut(s) 683
EcoO109I RGGNCCY 4 cut(s) 797, 870, 951, 1107
EcoO65I GGTNACC 1 cut(s) 683
EcoRII CCWGG 5 cut(s) 674, 838, 919, 988, 1037
EcoT38I GRGCYC 5 cut(s) 747, 783, 801, 954, 1111
FaeI CATG 5 cut(s) 10, 17, 91, 567, 602
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 664, 1027
FatI CATG 5 cut(s) 6, 13, 87, 563, 598
FauI CCCGC 1 cut(s) 786
FblI GTMKAC 1 cut(s) 936
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 7 cut(s) 557, 691, 822, 859, 875, 962, 976
FriOI GRGCYC 5 cut(s) 747, 783, 801, 954, 1111
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 3 cut(s) 33, 584, 633
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 5 cut(s) 799, 805, 871, 952, 1109
HapII CCGG 3 cut(s) 783, 801, 806
Hin1I GRCGYC 1 cut(s) 945
Hin1II CATG 5 cut(s) 10, 17, 91, 567, 602
HincII GTYRAC 2 cut(s) 937, 1048
HindII GTYRAC 2 cut(s) 937, 1048
HindIII AAGCTT 1 cut(s) 604
HinfI GANTC 1 cut(s) 1175
HpaII CCGG 3 cut(s) 783, 801, 806
HphI GGTGA 1 cut(s) 695
Hpy166II GTNNAC 3 cut(s) 659, 937, 1048
Hpy188I TCNGA 4 cut(s) 196, 829, 910, 927
Hpy188III TCNNGA 3 cut(s) 168, 398, 1012
Hpy8I GTNNAC 3 cut(s) 659, 937, 1048
Hpy99I CGWCG 3 cut(s) 860, 941, 950
HpyCH4III ACNGT 4 cut(s) 236, 727, 770, 1135
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 4 cut(s) 17, 63, 773, 1024
HpyF3I CTNAG 1 cut(s) 956
HpySE526I ACGT 1 cut(s) 945
Hsp92I GRCGYC 1 cut(s) 945
Hsp92II CATG 5 cut(s) 10, 17, 91, 567, 602
Kzo9I GATC 2 cut(s) 591, 595
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 2 cut(s) 75, 1008
MaeI CTAG 3 cut(s) 33, 584, 633
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 7 cut(s) 132, 566, 683, 812, 893, 971, 1129
MalI GATC 2 cut(s) 593, 597
MboI GATC 2 cut(s) 591, 595
MboII GAAGA 1 cut(s) 67
MhlI GDGCHC 5 cut(s) 747, 783, 801, 954, 1111
MlyI GAGTC 1 cut(s) 1184
MmeI TCCRAC 3 cut(s) 571, 824, 1003
MnlI CCTC 6 cut(s) 723, 853, 870, 934, 951, 1087
MspI CCGG 3 cut(s) 783, 801, 806
MspR9I CCNGG 9 cut(s) 676, 783, 801, 802, 807, 840, 921, 990, 1039
MvaI CCWGG 5 cut(s) 676, 840, 921, 990, 1039
MvnI CGCG 1 cut(s) 663
NciI CCSGG 4 cut(s) 783, 801, 802, 807
NdeII GATC 2 cut(s) 591, 595
NlaIII CATG 5 cut(s) 10, 17, 91, 567, 602
NlaIV GGNNCC 6 cut(s) 798, 799, 952, 953, 1108, 1109
NmuCI GTSAC 3 cut(s) 683, 812, 893
NspI RCATGY 2 cut(s) 10, 567
PasI CCCWGGG 1 cut(s) 989
PciI ACATGT 1 cut(s) 563
PcsI WCGNNNNNNNCGW 2 cut(s) 774, 942
PflMI CCANNNNNTGG 2 cut(s) 839, 920
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 1183
PpsI GAGTC 1 cut(s) 1183
PscI ACATGT 1 cut(s) 563
Psp6I CCWGG 5 cut(s) 674, 838, 919, 988, 1037
PspEI GGTNACC 1 cut(s) 683
PspGI CCWGG 5 cut(s) 674, 838, 919, 988, 1037
PspN4I GGNNCC 6 cut(s) 798, 799, 952, 953, 1108, 1109
PspOMI GGGCCC 3 cut(s) 797, 950, 1107
PspPI GGNCC 8 cut(s) 797, 798, 803, 870, 950, 951, 1107, 1108
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
SalI GTCGAC 1 cut(s) 935
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 591, 595
Sau96I GGNCC 8 cut(s) 797, 798, 803, 870, 950, 951, 1107, 1108
SchI GAGTC 1 cut(s) 1184
ScrFI CCNGG 9 cut(s) 676, 783, 801, 802, 807, 840, 921, 990, 1039
SduI GDGCHC 5 cut(s) 747, 783, 801, 954, 1111
SetI ASST 5 cut(s) 192, 513, 608, 948, 1092
SfaNI GCATC 2 cut(s) 75, 1008
SmaI CCCGGG 1 cut(s) 802
SmlI CTYRAG 3 cut(s) 746, 874, 1091
SmoI CTYRAG 3 cut(s) 746, 874, 1091
SrfI GCCCGGGC 1 cut(s) 802
SsiI CCGC 3 cut(s) 751, 793, 1116
SspMI CTAG 3 cut(s) 33, 584, 633
StyD4I CCNGG 9 cut(s) 674, 781, 799, 800, 805, 838, 919, 988, 1037
TaaI ACNGT 4 cut(s) 236, 727, 770, 1135
TaiI ACGT 1 cut(s) 948
TaqI TCGA 3 cut(s) 594, 777, 936
TatI WGTACW 1 cut(s) 635
TscAI CASTG 3 cut(s) 24, 696, 1059
TseFI GTSAC 3 cut(s) 683, 812, 893
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 3 cut(s) 683, 812, 893
TspDTI ATGAA 4 cut(s) 17, 76, 101, 980
TspMI CCCGGG 1 cut(s) 800
TspRI CASTG 3 cut(s) 24, 696, 1059
Van91I CCANNNNNTGG 2 cut(s) 839, 920
XapI RAATTY 5 cut(s) 83, 249, 325, 401, 1164
XceI RCATGY 2 cut(s) 10, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XmaI CCCGGG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 936
XspI CTAG 3 cut(s) 33, 584, 633
ZraI GACGTC 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.