pycom05g22620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000158
Physical Location & Seq
Forward (+)
24882424 .. 24883883
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22620.1

Sequence Viewer

Length: 1002 bp
ATGGGTGACCCACTGGGAAGTTCTCGTGTGAGTTCCCAGAAACAAAACTGTGAAGGCGTGGTCGAGGTCCAAAGCAGACAATATAGTACTACGGTAGAGTCGAGCCCAGGATGTGGTGGAGGTATAGGCCAGGATGTGACAATTTGGTATCAGAGCCAATCCCTGGCCGGAAATCGATCATCATCGTCTAGGGGTGAGGATCATGTAAGCCTTATATGTATATTCTTATCTCTACTTAGCACAATGCCTTTTGGGAGCTCACTGGATTCAGGTTCCGTAGGAGCTCCGAAGTTAAGCGAGTTCGCGCGAGAGCAATCCCATGATGGGGTGTGGTCGGGACCCAAAGCGGAAAATATCGTGTTACGGTGGAGTCGAGTTCAGGATGTGGTGGGGGCCTGGACTGGGATGAAGTTTTCTATTTTATTTATTTTTTTCATGTTATTGTTTGATTTGAACTATAGCTCAACAAGAATTTTTATTAAGAACCCACTTATTATTTTTCGCACTGAGCACTTAAAATCTCATAACCAGAAAAAACTGAAAACAAAATCTAAGACCGAACGGAGGATCCTAACAGTAGAATATATATGTCCGAATGCTAACTTTTCCATTTATAAAAAATTAGAGAATATGCATGTATACTGTAAGAATGCAAAGACAAAGTCTAATCCGTATTTCTTTATTATCAATTTTTTTTTTTTTTTTAAGCACATGATATACCTGAATATGTTATTCATGCTTTCACATGGAAGACTATGCAGACCTCGTTCTTATCCCACCATCATTATTTTATCCACGAAAACAATGAAAAGAGAGGAAATATGCTTAAGGTCAGGGTTTACTGGACCTGAAAGTAAACAGTCAAACTGTCAAACAGGTAAAAGAATCAATCTGACAAAAAACTTCAGCCGTTGGTATTATTTCATTGATCGGTCAAGTCTTGTTCACACTCACTCAAAACGTGTGATAAATTACACGAAAGTTTGTACATTATATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

38.17

Weight (kDa)

9.75

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AccB7I CCANNNNNTGG 2 cut(s) 113, 163
AccI GTMKAC 1 cut(s) 639
AccII CGCG 2 cut(s) 305, 307
AciI CCGC 1 cut(s) 347
AclWI GGATC 3 cut(s) 207, 562, 575
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 889
AfaI GTAC 2 cut(s) 88, 988
AfiI CCNNNNNNNGG 6 cut(s) 113, 163, 324, 325, 402, 564
AflII CTTAAG 1 cut(s) 826
AflIII ACRYGT 1 cut(s) 961
AgsI TTSAA 1 cut(s) 454
AjnI CCWGG 4 cut(s) 106, 129, 162, 395
AloI GAACNNNNNNTCC 2 cut(s) 552, 584
AluBI AGCT 3 cut(s) 258, 284, 462
AluI AGCT 3 cut(s) 258, 284, 462
Alw21I GWGCWC 3 cut(s) 260, 286, 513
AlwI GGATC 3 cut(s) 207, 562, 575
AoxI GGCC 3 cut(s) 127, 165, 393
ApoI RAATTY 1 cut(s) 471
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 4 cut(s) 67, 338, 393, 845
AsuHPI GGTGA 2 cut(s) 17, 206
AvaII GGWCC 3 cut(s) 67, 338, 845
BamHI GGATCC 1 cut(s) 567
BanII GRGCYC 3 cut(s) 107, 260, 286
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 757
Bbv12I GWGCWC 3 cut(s) 260, 286, 513
BccI CCATC 2 cut(s) 317, 788
BceAI ACGGC 1 cut(s) 894
BciT130I CCWGG 4 cut(s) 108, 131, 164, 397
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 2 cut(s) 457, 998
BfrI CTTAAG 1 cut(s) 826
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 4 cut(s) 108, 131, 164, 397
Bme18I GGWCC 3 cut(s) 67, 338, 845
BmgT120I GGNCC 4 cut(s) 67, 338, 393, 845
BmiI GGNNCC 5 cut(s) 274, 339, 340, 394, 569
BmrFI CCNGG 4 cut(s) 108, 131, 164, 397
BmrI ACTGGG 2 cut(s) 23, 411
BmuI ACTGGG 2 cut(s) 23, 411
BpiI GAAGAC 1 cut(s) 757
Bsa29I ATCGAT 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 106, 162
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 163, 324, 325, 402, 564
Bse1I ACTGG 4 cut(s) 18, 267, 406, 847
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 4 cut(s) 108, 131, 164, 397
BseCI ATCGAT 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 106, 162
BseGI GGATG 4 cut(s) 116, 139, 388, 411
BseJI GATNNNNATC 1 cut(s) 181
BseLI CCNNNNNNNGG 6 cut(s) 113, 163, 324, 325, 402, 564
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 4 cut(s) 18, 267, 406, 847
Bsh1236I CGCG 2 cut(s) 305, 307
BshFI GGCC 3 cut(s) 129, 167, 395
BshVI ATCGAT 1 cut(s) 175
BsiHKAI GWGCWC 3 cut(s) 260, 286, 513
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 6 cut(s) 113, 163, 324, 325, 402, 564
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 2 cut(s) 601, 655
BsnI GGCC 3 cut(s) 129, 167, 395
Bsp1286I GDGCHC 4 cut(s) 107, 260, 286, 513
Bsp1407I TGTACA 1 cut(s) 986
Bsp143I GATC 4 cut(s) 176, 199, 567, 928
BspACI CCGC 1 cut(s) 347
BspANI GGCC 3 cut(s) 129, 167, 395
BspCNI CTCAG 1 cut(s) 499
BspDI ATCGAT 1 cut(s) 175
BspFNI CGCG 2 cut(s) 305, 307
BspLI GGNNCC 5 cut(s) 274, 339, 340, 394, 569
BspPI GGATC 3 cut(s) 207, 562, 575
BspTI CTTAAG 1 cut(s) 826
BsrGI TGTACA 1 cut(s) 986
BsrI ACTGG 4 cut(s) 18, 267, 406, 847
BssECI CCNNGG 2 cut(s) 106, 162
BssMI GATC 4 cut(s) 176, 199, 567, 928
BssNAI GTATAC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 24
Bst1107I GTATAC 1 cut(s) 640
Bst2BI CACGAG 1 cut(s) 24
Bst2UI CCWGG 4 cut(s) 108, 131, 164, 397
Bst4CI ACNGT 7 cut(s) 50, 94, 366, 577, 644, 861, 869
BstAFI CTTAAG 1 cut(s) 826
BstAUI TGTACA 1 cut(s) 986
BstDEI CTNAG 3 cut(s) 236, 507, 552
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 4 cut(s) 116, 139, 388, 411
BstFNI CGCG 2 cut(s) 305, 307
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 179, 202, 570, 931
BstMBI GATC 4 cut(s) 176, 199, 567, 928
BstNI CCWGG 4 cut(s) 108, 131, 164, 397
BstNSI RCATGY 1 cut(s) 638
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 4 cut(s) 106, 129, 162, 395
BstSFI CTRYAG 2 cut(s) 457, 998
BstUI CGCG 2 cut(s) 305, 307
BstV2I GAAGAC 1 cut(s) 757
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BstZ17I GTATAC 1 cut(s) 640
Bsu15I ATCGAT 1 cut(s) 175
BsuRI GGCC 3 cut(s) 129, 167, 395
BsuTUI ATCGAT 1 cut(s) 175
BtsCI GGATG 4 cut(s) 116, 139, 388, 411
BtsIMutI CAGTG 3 cut(s) 11, 260, 504
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 4 cut(s) 67, 338, 393, 845
ClaI ATCGAT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 87, 987
CviAII CATG 7 cut(s) 203, 320, 436, 635, 712, 736, 746
CviQI GTAC 2 cut(s) 87, 987
DdeI CTNAG 3 cut(s) 236, 507, 552
DpnI GATC 4 cut(s) 178, 201, 569, 930
DpnII GATC 4 cut(s) 176, 199, 567, 928
EaeI YGGCCR 1 cut(s) 165
Ecl136II GAGCTC 2 cut(s) 258, 284
Eco24I GRGCYC 3 cut(s) 107, 260, 286
Eco47I GGWCC 3 cut(s) 67, 338, 845
Eco53kI GAGCTC 2 cut(s) 258, 284
Eco57I CTGAAG 1 cut(s) 889
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 2 cut(s) 258, 284
EcoO109I RGGNCCY 2 cut(s) 338, 393
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 4 cut(s) 106, 129, 162, 395
EcoT22I ATGCAT 1 cut(s) 636
EcoT38I GRGCYC 3 cut(s) 107, 260, 286
FaeI CATG 7 cut(s) 206, 323, 439, 638, 715, 739, 749
FaqI GGGAC 1 cut(s) 351
FatI CATG 7 cut(s) 202, 319, 435, 634, 711, 735, 745
FblI GTMKAC 1 cut(s) 639
FokI GGATG 4 cut(s) 123, 146, 395, 418
FriOI GRGCYC 3 cut(s) 107, 260, 286
FspBI CTAG 1 cut(s) 189
GlaI GCGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 129, 167, 395
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 307
Hin1II CATG 7 cut(s) 206, 323, 439, 638, 715, 739, 749
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 4 cut(s) 98, 266, 370, 885
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 17, 206
Hpy166II GTNNAC 4 cut(s) 640, 840, 857, 946
Hpy188I TCNGA 4 cut(s) 153, 288, 594, 894
Hpy188III TCNNGA 2 cut(s) 336, 380
Hpy8I GTNNAC 4 cut(s) 640, 840, 857, 946
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 7 cut(s) 50, 94, 366, 577, 644, 861, 869
HpyCH4IV ACGT 1 cut(s) 961
HpyCH4V TGCA 3 cut(s) 634, 653, 759
HpyF3I CTNAG 3 cut(s) 236, 507, 552
HpySE526I ACGT 1 cut(s) 961
Hsp92II CATG 7 cut(s) 206, 323, 439, 638, 715, 739, 749
HspAI GCGC 1 cut(s) 305
KflI GGGWCCC 1 cut(s) 338
Kzo9I GATC 4 cut(s) 176, 199, 567, 928
LmnI GCTCC 3 cut(s) 255, 281, 289
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 961
MaeIII GTNAC 3 cut(s) 5, 136, 360
MalI GATC 4 cut(s) 178, 201, 569, 930
MboI GATC 4 cut(s) 176, 199, 567, 928
MboII GAAGA 1 cut(s) 762
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 4 cut(s) 107, 260, 286, 513
MluCI AATT 5 cut(s) 141, 471, 620, 688, 970
MlyI GAGTC 2 cut(s) 107, 379
MnlI CCTC 6 cut(s) 58, 113, 190, 558, 774, 808
Mph1103I ATGCAT 1 cut(s) 636
MseI TTAA 5 cut(s) 293, 480, 515, 705, 827
MspCI CTTAAG 1 cut(s) 826
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 4 cut(s) 108, 131, 164, 397
Mva1269I GAATGC 2 cut(s) 601, 655
MvaI CCWGG 4 cut(s) 108, 131, 164, 397
MvnI CGCG 2 cut(s) 305, 307
NdeII GATC 4 cut(s) 176, 199, 567, 928
NlaIII CATG 7 cut(s) 206, 323, 439, 638, 715, 739, 749
NlaIV GGNNCC 5 cut(s) 274, 339, 340, 394, 569
NmuCI GTSAC 2 cut(s) 5, 136
NsiI ATGCAT 1 cut(s) 636
NspI RCATGY 1 cut(s) 638
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 370
PctI GAATGC 2 cut(s) 601, 655
PfeI GAWTC 2 cut(s) 266, 885
PflFI GACNNNGTC 1 cut(s) 661
PflMI CCANNNNNTGG 2 cut(s) 113, 163
PleI GAGTC 2 cut(s) 106, 378
PpsI GAGTC 2 cut(s) 106, 378
PpuMI RGGWCCY 1 cut(s) 338
PsiI TTATAA 1 cut(s) 615
Psp124BI GAGCTC 2 cut(s) 260, 286
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 4 cut(s) 106, 129, 162, 395
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 4 cut(s) 106, 129, 162, 395
PspN4I GGNNCC 5 cut(s) 274, 339, 340, 394, 569
PspPI GGNCC 4 cut(s) 67, 338, 393, 845
PspPPI RGGWCCY 1 cut(s) 338
PsuI RGATCY 1 cut(s) 567
PsyI GACNNNGTC 1 cut(s) 661
RsaI GTAC 2 cut(s) 88, 988
RsaNI GTAC 2 cut(s) 87, 987
SacI GAGCTC 2 cut(s) 260, 286
SaqAI TTAA 5 cut(s) 293, 480, 515, 705, 827
Sau3AI GATC 4 cut(s) 176, 199, 567, 928
Sau96I GGNCC 4 cut(s) 67, 338, 393, 845
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 2 cut(s) 107, 379
ScrFI CCNGG 4 cut(s) 108, 131, 164, 397
SduI GDGCHC 4 cut(s) 107, 260, 286, 513
SfcI CTRYAG 2 cut(s) 457, 998
SinI GGWCC 3 cut(s) 67, 338, 845
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
Sse9I AATT 5 cut(s) 141, 471, 620, 688, 970
SsiI CCGC 1 cut(s) 347
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 2 cut(s) 260, 286
StyD4I CCNGG 4 cut(s) 106, 129, 162, 395
TaaI ACNGT 7 cut(s) 50, 94, 366, 577, 644, 861, 869
TaiI ACGT 1 cut(s) 964
TaqI TCGA 4 cut(s) 63, 101, 175, 373
TaqII GACCGA 2 cut(s) 572, 921
TasI AATT 5 cut(s) 141, 471, 620, 688, 970
TatI WGTACW 2 cut(s) 86, 986
TfiI GAWTC 2 cut(s) 266, 885
Tru1I TTAA 5 cut(s) 293, 480, 515, 705, 827
Tru9I TTAA 5 cut(s) 293, 480, 515, 705, 827
TscAI CASTG 3 cut(s) 18, 267, 511
TseFI GTSAC 2 cut(s) 5, 136
Tsp45I GTSAC 2 cut(s) 5, 136
TspDTI ATGAA 5 cut(s) 422, 424, 724, 821, 913
TspGWI ACGGA 3 cut(s) 265, 577, 660
TspRI CASTG 3 cut(s) 18, 267, 511
Tth111I GACNNNGTC 1 cut(s) 661
Van91I CCANNNNNTGG 2 cut(s) 113, 163
Vha464I CTTAAG 1 cut(s) 826
VpaK11BI GGWCC 3 cut(s) 67, 338, 845
XapI RAATTY 1 cut(s) 471
XceI RCATGY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 639
XspI CTAG 1 cut(s) 189
ZrmI AGTACT 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.