pycom02g20740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000158
Physical Location & Seq
Forward (+)
18766424 .. 18767516
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20740.3

Sequence Viewer

Length: 879 bp
ATGCACTCTCATAAATGTATTTTTCTTTCTAATTATAGAAAGTTTGGAATGCCAAATGAGATTTTTGAAATGCTAATAACAATTTCCATAATATATATAAATATTATATTTATATTTGAAATAGTATTCGCTGAACCCTATACTATGTTCATTATGCGCCAAATATCATGCTTATGGGAGATATCAACAACCAACATTATCATTGTTTTATTCAATACTACTATTTTTACACTTGCCAAAATTCATTCATTGTTATGTTTTTTATTATTGGACGTGACTTGTCACATCCCGGCCCAGACCCCCACCGCATCCCGAGCTCGACTCCATCGTAGCACGACATTGTCCGCTTTGGGCCCTTACCACACCCTCACGGTTTTGTTTCTGGGAACTCACACAAGAACTTCCCAATTGGTCACCCATCCTGGGAATGCTCTTGCCCAAACTCGTTTAACTTCAGACTTGAAGCCAGTGAACTCCCAAAATGCCTCGATCCACTCCCCTGGGCGATGTGGGATGTTACAATCCACCCTCCTTAGGGCCTTGACGTCTTTGTCGACACACATTCGCCCAGGGATTGGCTATGATACCAAATTTGTCCGCTTTGGGCCCCTACCACACCCTCATGGTTTTGTTTATGGGAACTCACACAAGAACTTTCCAATGGGTCATCCATCCTGGGAATGCTCTCGTCTGAACTCACTTAACTTCGGAGTTCCTATGGAACCCGAAGCCAATGAGCTCCCAAAAAGCCTCGTGCTAGGTAGATATGGGAATATACATATAAGGCTTACAAGATCCACTCCCATGGGTGATGTGAGATGTTACATGCAAAATAAATTTTTGTTTTTGACGAAGATAGATATAACCGTTAACCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.07

Weight (kDa)

9.65

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000158)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10163
malus_domestica MD04G1068000.v1.1 MD05G1130900.v1.1 MD06G1153600.v1.1 MD10G1255900.v1.1 MD10G1282000.v1.1 MD13G1075400.v1.1 MD13G1192400.v1.1
pyrus_communis pycom01g00130 pycom01g00390 pycom01g00700 pycom01g00720 pycom01g00750 pycom01g00850 pycom01g00870 pycom01g00910 pycom01g01250 pycom01g01560 pycom01g01680 pycom01g01860 pycom01g01900 pycom01g01910 pycom01g02200 pycom01g02260 pycom01g02270 pycom01g02280 pycom01g02330 pycom01g02480 pycom01g02720 pycom01g02730 pycom01g02750 pycom01g02770 pycom01g02780 pycom01g02860 pycom01g02910 pycom01g03540 pycom01g04090 pycom01g04100 pycom01g04150 pycom01g04250 pycom01g04430 pycom01g11810 pycom01g11860 pycom01g11940 pycom01g21380 pycom02g06650 pycom02g08490 pycom02g08600 pycom02g18230 pycom02g18450 pycom02g18800 pycom02g19150 pycom02g20740 pycom02g21340 pycom02g26210 pycom03g12060 pycom03g19060 pycom03g19100 pycom03g19120 pycom04g06890 pycom04g08960 pycom05g01790 pycom05g07910 pycom05g08080 pycom05g08100 pycom05g08570 pycom05g21500 pycom05g22400 pycom05g22510 pycom05g22620 pycom05g23020 pycom05g23720 pycom05g23890 pycom05g24040 pycom07g12080 pycom08g07930 pycom08g11940 pycom09g12120 pycom10g03890 pycom10g23360 pycom10g28250 pycom11g02850 pycom11g14370 pycom11g14400 pycom11g21840 pycom11g21860 pycom11g21980 pycom11g23580 pycom11g23650 pycom11g24050 pycom11g25610 pycom12424g00060 pycom1256g00130 pycom12661g00030 pycom12g09520 pycom12g09530 pycom12g09660 pycom12g09730 pycom12g11210 pycom12g16710 pycom12g16740 pycom12g16750 pycom13g08800 pycom13g18580 pycom13g18670 pycom13g18770 pycom13g22900 pycom13g23050 pycom13g23160 pycom13g23480 pycom13g23610 pycom13g23660 pycom13g23790 pycom13g23840 pycom13g24010 pycom13g24140 pycom13g24210 pycom13g24300 pycom13g24310 pycom13g24480 pycom13g24520 pycom13g24570 pycom13g24730 pycom13g24760 pycom13g24820 pycom13g25010 pycom13g25020 pycom13g25270 pycom13g25620 pycom13g25670 pycom13g25760 pycom13g25800 pycom13g25900 pycom13g26620 pycom13g26640 pycom13g26670 pycom13g26940 pycom13g27040 pycom13g27130 pycom13g27530 pycom13g27770 pycom13g27830 pycom13g27920 pycom13g27940 pycom13g28100 pycom13g28420 pycom13g28430 pycom13g28460 pycom13g28520 pycom13g29160 pycom14g05380 pycom15g03480 pycom15g04370 pycom15g27500 pycom16g13590 pycom16g13610 pycom16g13630 pycom16g14390 pycom16g18310 pycom17g01940 pycom17g04000 pycom17g16100 pycom17g16220 pycom17g16230 pycom17g16340 pycom17g16430 pycom17g16460 pycom17g16740 pycom17g16960 pycom17g17020 pycom17g17090 pycom17g17100 pycom17g17170 pycom17g17430 pycom17g17850 pycom17g18230 pycom17g18250 pycom17g18380 pycom17g21170 pycom17g21330 pycom520g00150 pycom520g00160 pycom808g00030 pycom808g00160 pycom808g00250 pycom808g00290
rosa_chinensis RchiOBHm_Chr5g0054451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 550
AatII GACGTC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 554
AciI CCGC 3 cut(s) 306, 345, 598
AclWI GGATC 2 cut(s) 484, 789
AcsI RAATTY 3 cut(s) 240, 590, 836
AcuI CTGAAG 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 423, 534, 535, 575
AgsI TTSAA 4 cut(s) 68, 119, 214, 463
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 4 cut(s) 421, 499, 568, 674
AluBI AGCT 2 cut(s) 317, 739
AluI AGCT 2 cut(s) 317, 739
Alw21I GWGCWC 2 cut(s) 319, 741
AlwI GGATC 2 cut(s) 484, 789
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 4 cut(s) 291, 352, 537, 605
ApaI GGGCCC 2 cut(s) 356, 609
ApoI RAATTY 3 cut(s) 240, 590, 836
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 6 cut(s) 292, 352, 353, 537, 605, 606
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 406, 821
AvaI CYCGRG 1 cut(s) 312
AxyI CCTNAGG 1 cut(s) 533
BaeGI GKGCMC 2 cut(s) 356, 609
BanII GRGCYC 4 cut(s) 319, 356, 609, 741
BauI CACGAG 1 cut(s) 752
Bbv12I GWGCWC 2 cut(s) 319, 741
BccI CCATC 3 cut(s) 333, 426, 679
BciT130I CCWGG 4 cut(s) 423, 501, 570, 676
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 758
Bme1390I CCNGG 5 cut(s) 290, 423, 501, 570, 676
BmeT110I CYCGRG 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 6 cut(s) 292, 352, 353, 537, 605, 606
BmiI GGNNCC 4 cut(s) 354, 607, 608, 723
BmrFI CCNGG 5 cut(s) 290, 423, 501, 570, 676
BmsI GCATC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 306, 338
BpuMI CCSGG 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 545
BsaJI CCNNGG 7 cut(s) 422, 499, 500, 568, 569, 675, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 423, 534, 535, 575
Bse1I ACTGG 1 cut(s) 467
Bse21I CCTNAGG 1 cut(s) 533
BseBI CCWGG 4 cut(s) 423, 501, 570, 676
BseDI CCNNGG 7 cut(s) 422, 499, 500, 568, 569, 675, 804
BseGI GGATG 6 cut(s) 285, 308, 418, 519, 667, 671
BseLI CCNNNNNNNGG 4 cut(s) 423, 534, 535, 575
BseNI ACTGG 1 cut(s) 467
BseSI GKGCMC 2 cut(s) 356, 609
BshFI GGCC 4 cut(s) 293, 354, 539, 607
BsiHKAI GWGCWC 2 cut(s) 319, 741
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 4 cut(s) 423, 534, 535, 575
BsmI GAATGC 3 cut(s) 54, 433, 686
BsnI GGCC 4 cut(s) 293, 354, 539, 607
BsoBI CYCGRG 1 cut(s) 312
Bsp120I GGGCCC 2 cut(s) 352, 605
Bsp1286I GDGCHC 4 cut(s) 319, 356, 609, 741
Bsp143I GATC 2 cut(s) 489, 794
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 3 cut(s) 306, 345, 598
BspANI GGCC 4 cut(s) 293, 354, 539, 607
BspLI GGNNCC 4 cut(s) 354, 607, 608, 723
BspPI GGATC 2 cut(s) 484, 789
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 7 cut(s) 422, 499, 500, 568, 569, 675, 804
BssMI GATC 2 cut(s) 489, 794
BssNI GRCGYC 1 cut(s) 545
BssSI CACGAG 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 804
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 4 cut(s) 423, 501, 570, 676
Bst4CI ACNGT 2 cut(s) 373, 868
BstACI GRCGYC 1 cut(s) 545
BstDEI CTNAG 1 cut(s) 533
BstDSI CCRYGG 1 cut(s) 804
BstEII GGTNACC 1 cut(s) 412
BstF5I GGATG 6 cut(s) 285, 308, 418, 519, 667, 671
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 2 cut(s) 492, 797
BstMBI GATC 2 cut(s) 489, 794
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 4 cut(s) 423, 501, 570, 676
BstNSI RCATGY 1 cut(s) 829
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 5 cut(s) 288, 421, 499, 568, 674
BstSLI GKGCMC 2 cut(s) 356, 609
BstX2I RGATCY 1 cut(s) 794
BstXI CCANNNNNNTGG 2 cut(s) 500, 805
BstYI RGATCY 1 cut(s) 794
Bsu36I CCTNAGG 1 cut(s) 533
BsuRI GGCC 4 cut(s) 293, 354, 539, 607
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 1 cut(s) 520
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 6 cut(s) 285, 308, 418, 519, 667, 671
BtsIMutI CAGTG 1 cut(s) 474
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 6 cut(s) 292, 352, 353, 537, 605, 606
CviAII CATG 4 cut(s) 168, 623, 805, 826
DdeI CTNAG 1 cut(s) 533
DpnI GATC 2 cut(s) 491, 796
DpnII GATC 2 cut(s) 489, 794
DrdI GACNNNNNNGTC 1 cut(s) 550
DseDI GACNNNNNNGTC 1 cut(s) 550
Ecl136II GAGCTC 2 cut(s) 317, 739
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 4 cut(s) 319, 356, 609, 741
Eco32I GATATC 1 cut(s) 183
Eco53kI GAGCTC 2 cut(s) 317, 739
Eco57I CTGAAG 1 cut(s) 438
Eco81I CCTNAGG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 412
EcoICRI GAGCTC 2 cut(s) 317, 739
EcoO109I RGGNCCY 3 cut(s) 353, 537, 606
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 4 cut(s) 421, 499, 568, 674
EcoRV GATATC 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 804
EcoT38I GRGCYC 4 cut(s) 319, 356, 609, 741
ErhI CCWWGG 1 cut(s) 804
FaeI CATG 4 cut(s) 171, 626, 808, 829
FatI CATG 4 cut(s) 167, 622, 804, 825
FblI GTMKAC 1 cut(s) 554
FokI GGATG 6 cut(s) 272, 295, 405, 526, 654, 658
FriOI GRGCYC 4 cut(s) 319, 356, 609, 741
FspBI CTAG 1 cut(s) 758
GlaI GCGC 1 cut(s) 158
HaeIII GGCC 4 cut(s) 293, 354, 539, 607
HapII CCGG 1 cut(s) 290
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 545
Hin1II CATG 4 cut(s) 171, 626, 808, 829
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 2 cut(s) 555, 871
HindII GTYRAC 2 cut(s) 555, 871
HinfI GANTC 1 cut(s) 321
HpaI GTTAAC 1 cut(s) 871
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 406, 821
Hpy166II GTNNAC 3 cut(s) 472, 555, 871
Hpy188I TCNGA 3 cut(s) 457, 693, 710
Hpy188III TCNNGA 1 cut(s) 312
Hpy8I GTNNAC 3 cut(s) 472, 555, 871
HpyCH4III ACNGT 2 cut(s) 373, 868
HpyCH4IV ACGT 2 cut(s) 273, 545
HpyCH4V TGCA 2 cut(s) 4, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 2 cut(s) 273, 545
Hsp92I GRCGYC 1 cut(s) 545
Hsp92II CATG 4 cut(s) 171, 626, 808, 829
HspAI GCGC 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 871
Kzo9I GATC 2 cut(s) 489, 794
LmnI GCTCC 1 cut(s) 744
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 758
MaeII ACGT 2 cut(s) 273, 545
MaeIII GTNAC 5 cut(s) 274, 281, 412, 516, 821
MalI GATC 2 cut(s) 491, 796
MboI GATC 2 cut(s) 489, 794
MboII GAAGA 1 cut(s) 865
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 4 cut(s) 319, 356, 609, 741
MluCI AATT 6 cut(s) 31, 81, 240, 407, 590, 836
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 5 cut(s) 377, 496, 539, 630, 761
MseI TTAA 3 cut(s) 449, 702, 870
MslI CAYNNNNRTG 4 cut(s) 172, 253, 621, 803
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 5 cut(s) 290, 423, 501, 570, 676
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 3 cut(s) 54, 433, 686
MvaI CCWGG 4 cut(s) 423, 501, 570, 676
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 290
NcoI CCATGG 1 cut(s) 804
NdeII GATC 2 cut(s) 489, 794
NlaIII CATG 4 cut(s) 171, 626, 808, 829
NlaIV GGNNCC 4 cut(s) 354, 607, 608, 723
NmuCI GTSAC 3 cut(s) 274, 281, 412
NspI RCATGY 1 cut(s) 829
PasI CCCWGGG 2 cut(s) 500, 569
PcsI WCGNNNNNNNCGW 2 cut(s) 325, 551
PctI GAATGC 3 cut(s) 54, 433, 686
PflFI GACNNNGTC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 575
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp124BI GAGCTC 2 cut(s) 319, 741
Psp6I CCWGG 4 cut(s) 421, 499, 568, 674
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 4 cut(s) 421, 499, 568, 674
PspN4I GGNNCC 4 cut(s) 354, 607, 608, 723
PspOMI GGGCCC 2 cut(s) 352, 605
PspPI GGNCC 6 cut(s) 292, 352, 353, 537, 605, 606
PsuI RGATCY 1 cut(s) 794
PsyI GACNNNGTC 1 cut(s) 340
RseI CAYNNNNRTG 4 cut(s) 172, 253, 621, 803
SacI GAGCTC 2 cut(s) 319, 741
SalI GTCGAC 1 cut(s) 553
SaqAI TTAA 3 cut(s) 449, 702, 870
Sau3AI GATC 2 cut(s) 489, 794
Sau96I GGNCC 6 cut(s) 292, 352, 353, 537, 605, 606
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 5 cut(s) 290, 423, 501, 570, 676
SduI GDGCHC 4 cut(s) 319, 356, 609, 741
SetI ASST 5 cut(s) 276, 319, 548, 741, 763
SfaNI GCATC 1 cut(s) 317
SmiMI CAYNNNNRTG 4 cut(s) 172, 253, 621, 803
Sse9I AATT 6 cut(s) 31, 81, 240, 407, 590, 836
SsiI CCGC 3 cut(s) 306, 345, 598
SspI AATATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 758
SstI GAGCTC 2 cut(s) 319, 741
StyD4I CCNGG 5 cut(s) 288, 421, 499, 568, 674
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 2 cut(s) 373, 868
TaiI ACGT 2 cut(s) 276, 548
TaqI TCGA 3 cut(s) 319, 488, 554
TasI AATT 6 cut(s) 31, 81, 240, 407, 590, 836
Tru1I TTAA 3 cut(s) 449, 702, 870
Tru9I TTAA 3 cut(s) 449, 702, 870
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 3 cut(s) 274, 281, 412
Tsp45I GTSAC 3 cut(s) 274, 281, 412
TspDTI ATGAA 3 cut(s) 139, 233, 237
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 575
XapI RAATTY 3 cut(s) 240, 590, 836
XceI RCATGY 1 cut(s) 829
XmiI GTMKAC 1 cut(s) 554
XspI CTAG 1 cut(s) 758
ZraI GACGTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.