Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000123

Physical Location & Seq

Genomic Coordinates Reverse (-)

17899814 .. 17900362

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATTTCAATGTTGTTTCCGCGGTCGCCTTTGTGCACAGCAGCCATAGTATTCTACACATGTGTGTGCATTCCCTTGGGGAGGTTGAAGAAGAATGGTGGAGATGCGGATGCGCATGATGATGACGGTTACAACCTAGTGGGAGTGATGTTTGGGGACAAGGAAAAGGAGGAGGAAATTTGCTGCCCCATATGCCTGGTGGAGTTTGAGGCTGAGGATGCGGTGACCCATCTTCCCAGATGCGCTCATCTCTTCCATATCAATTGCATAGAACCTTGGCTTCTCCGTGGCCACCTCACTTGCCCTCTCTGCAGATCATTTGTATTGGCTCCAACTCCTCCTACACAAAATGTCAATAATGCACACTCCTCTTCCACCTTGTATCTCTCTATCTTCTTCTTTTTCTGTATCTTTCTCCATCTACTTGGATACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031224 GO:0031225 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

145

Amino Acids

16.25

Weight (kDa)

5.53

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	59 - 105	2.2e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	61 - 105	4e-11	Ring finger domain
zf-RING_11	PF17123	62 - 90	3.3e-08	RING-like zinc finger
zf-C3HC4	PF00097	62 - 104	1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	62 - 102	3.8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38140
fragaria_vesca	FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica	MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica	Prupe.8G183300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata	RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora	Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa	Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha	Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana	Rw4G024160

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	114
AccII	CGCG	1 cut(s)	22
AciI	CCGC	4 cut(s)	20, 22, 107, 221
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	9, 88
AjnI	CCWGG	1 cut(s)	195
AleI	CACNNNNGTG	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	41, 183
ApoI	RAATTY	1 cut(s)	177
AspLEI	GCGC	2 cut(s)	115, 245
AsuHPI	GGTGA	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	53, 170
BccI	CCATC	2 cut(s)	237, 426
BciT130I	CCWGG	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	42, 184
BlsI	GCNGC	2 cut(s)	43, 185
Bme1390I	CCNGG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	4 cut(s)	94, 100, 208, 230
Bpu10I	CCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	20, 75, 275, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	4 cut(s)	20, 75, 275, 286
BseGI	GGATG	2 cut(s)	115, 223
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	3 cut(s)	185, 327, 358
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	53, 170
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	314
BspACI	CCGC	4 cut(s)	20, 22, 107, 221
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	20, 75, 275, 286
BssMI	GATC	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	75, 275
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	257, 376
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	2 cut(s)	20, 286
BstEII	GGTNACC	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	115, 223
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	115, 245
BstKTI	GATC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	314
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 218, 309
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	63
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	53, 170
BstXI	CCANNNNNNTGG	2 cut(s)	196, 425
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	291
BtgI	CCRYGG	2 cut(s)	20, 286
BtsCI	GGATG	2 cut(s)	115, 223
CfoI	GCGC	2 cut(s)	115, 245
Cfr42I	CCGCGG	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	281, 316
CviAII	CATG	2 cut(s)	60, 116
CviJI	RGCY	5 cut(s)	44, 212, 280, 291, 329
CviKI_1	RGCY	5 cut(s)	44, 212, 280, 291, 329
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	257, 376
EarI	CTCTTC	2 cut(s)	257, 376
Eco130I	CCWWGG	2 cut(s)	75, 275
Eco91I	GGTNACC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	2 cut(s)	75, 275
ErhI	CCWWGG	2 cut(s)	75, 275
FaeI	CATG	2 cut(s)	63, 119
FaiI	YATR	7 cut(s)	47, 61, 117, 191, 193, 258, 269
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	59, 115
FauNDI	CATATG	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	42, 184
FokI	GGATG	2 cut(s)	122, 230
Fsp4HI	GCNGC	2 cut(s)	42, 184
FspAI	RTGCGCAY	1 cut(s)	114
FspBI	CTAG	1 cut(s)	137
FspI	TGCGCA	1 cut(s)	114
GlaI	GCGC	2 cut(s)	114, 244
GluI	GCNGC	2 cut(s)	42, 184
HaeIII	GGCC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	115, 245
Hin1II	CATG	2 cut(s)	63, 119
Hin6I	GCGC	2 cut(s)	113, 243
HinP1I	GCGC	2 cut(s)	113, 243
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	36, 69, 267, 312, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 218, 309
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	63, 119
HspAI	GCGC	2 cut(s)	113, 243
KspI	CCGCGG	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	3 cut(s)	182, 209, 250
Lsp1109I	GCAGC	2 cut(s)	53, 170
LweI	GCATC	4 cut(s)	94, 100, 208, 230
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	128, 223
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	7 cut(s)	100, 103, 224, 244, 363, 385, 388
MfeI	CAATTG	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	2 cut(s)	177, 262
MluNI	TGGCCA	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	9 cut(s)	75, 163, 166, 202, 208, 305, 315, 348, 379
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MslI	CAYNNNNRTG	3 cut(s)	62, 64, 120
Msp20I	TGGCCA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	192, 218, 309
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	2 cut(s)	63, 119
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	114
NspI	RCATGY	1 cut(s)	63
OliI	CACNNNNGTG	1 cut(s)	62
PciI	ACATGT	1 cut(s)	59
PctI	GAATGC	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	43, 185
PscI	ACATGT	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	314
RseI	CAYNNNNRTG	3 cut(s)	62, 64, 120
SacII	CCGCGG	1 cut(s)	23
SatI	GCNGC	2 cut(s)	42, 184
Sau3AI	GATC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	5 cut(s)	86, 138, 277, 297, 380
SfaNI	GCATC	4 cut(s)	94, 100, 208, 230
SfcI	CTRYAG	1 cut(s)	310
Sfr303I	CCGCGG	1 cut(s)	23
SgrBI	CCGCGG	1 cut(s)	23
SmiMI	CAYNNNNRTG	3 cut(s)	62, 64, 120
Sse9I	AATT	2 cut(s)	177, 262
SsiI	CCGC	4 cut(s)	20, 22, 107, 221
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	2 cut(s)	75, 275
TaaI	ACNGT	1 cut(s)	128
TasI	AATT	2 cut(s)	177, 262
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	41, 183
Tsp45I	GTSAC	1 cut(s)	223
TspGWI	ACGGA	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.