Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 662 |
| AccB1I | GGYRCC | 1 cut(s) | 662 |
| AciI | CCGC | 3 cut(s) | 71, 306, 333 |
| AclWI | GGATC | 1 cut(s) | 183 |
| AfaI | GTAC | 2 cut(s) | 567, 664 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 424 |
| AflIII | ACRYGT | 1 cut(s) | 568 |
| AgsI | TTSAA | 1 cut(s) | 54 |
| AjnI | CCWGG | 1 cut(s) | 579 |
| AleI | CACNNNNGTG | 1 cut(s) | 420 |
| AluBI | AGCT | 6 cut(s) | 240, 323, 338, 398, 441, 673 |
| AluI | AGCT | 6 cut(s) | 240, 323, 338, 398, 441, 673 |
| Alw21I | GWGCWC | 1 cut(s) | 675 |
| AlwI | GGATC | 1 cut(s) | 183 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 401 |
| Ama87I | CYCGRG | 1 cut(s) | 523 |
| ApeKI | GCWGC | 2 cut(s) | 395, 607 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 239, 255 |
| Asp718I | GGTACC | 1 cut(s) | 662 |
| AspLEI | GCGC | 1 cut(s) | 681 |
| AspS9I | GGNCC | 1 cut(s) | 461 |
| AsuHPI | GGTGA | 1 cut(s) | 404 |
| AvaI | CYCGRG | 1 cut(s) | 523 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BanI | GGYRCC | 1 cut(s) | 662 |
| BanII | GRGCYC | 1 cut(s) | 675 |
| Bbv12I | GWGCWC | 1 cut(s) | 675 |
| BbvCI | CCTCAGC | 1 cut(s) | 466 |
| BbvI | GCAGC | 2 cut(s) | 407, 594 |
| BceAI | ACGGC | 2 cut(s) | 200, 459 |
| BciT130I | CCWGG | 1 cut(s) | 581 |
| BciVI | GTATCC | 1 cut(s) | 218 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BfaI | CTAG | 1 cut(s) | 546 |
| BfmI | CTRYAG | 1 cut(s) | 393 |
| BfuI | GTATCC | 1 cut(s) | 218 |
| BglII | AGATCT | 1 cut(s) | 129 |
| BisI | GCNGC | 3 cut(s) | 72, 396, 608 |
| BlpI | GCTNAGC | 1 cut(s) | 319 |
| BlsI | GCNGC | 3 cut(s) | 73, 397, 609 |
| Bme1390I | CCNGG | 1 cut(s) | 581 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmeT110I | CYCGRG | 1 cut(s) | 523 |
| BmgT120I | GGNCC | 1 cut(s) | 461 |
| BmiI | GGNNCC | 3 cut(s) | 462, 463, 664 |
| BmrFI | CCNGG | 1 cut(s) | 581 |
| BmrI | ACTGGG | 1 cut(s) | 361 |
| BmsI | GCATC | 4 cut(s) | 90, 340, 594, 690 |
| BmuI | ACTGGG | 1 cut(s) | 361 |
| Bpu10I | CCTNAGC | 2 cut(s) | 466, 674 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 319 |
| BpuEI | CTTGAG | 1 cut(s) | 118 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 424 |
| Bse1I | ACTGG | 3 cut(s) | 367, 499, 664 |
| BseBI | CCWGG | 1 cut(s) | 581 |
| BseGI | GGATG | 2 cut(s) | 151, 681 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 424 |
| BseMII | CTCAG | 2 cut(s) | 480, 688 |
| BseNI | ACTGG | 3 cut(s) | 367, 499, 664 |
| BseRI | GAGGAG | 1 cut(s) | 564 |
| BseXI | GCAGC | 2 cut(s) | 407, 594 |
| BshNI | GGYRCC | 1 cut(s) | 662 |
| BsiHKAI | GWGCWC | 1 cut(s) | 675 |
| BsiHKCI | CYCGRG | 1 cut(s) | 523 |
| BslFI | GGGAC | 1 cut(s) | 447 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 424 |
| BsmFI | GGGAC | 1 cut(s) | 447 |
| BsoBI | CYCGRG | 1 cut(s) | 523 |
| Bsp1286I | GDGCHC | 1 cut(s) | 675 |
| Bsp143I | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 319 |
| BspACI | CCGC | 3 cut(s) | 71, 306, 333 |
| BspCNI | CTCAG | 2 cut(s) | 479, 687 |
| BspLI | GGNNCC | 3 cut(s) | 462, 463, 664 |
| BspMAI | CTGCAG | 1 cut(s) | 397 |
| BspPI | GGATC | 1 cut(s) | 183 |
| BspQI | GCTCTTC | 2 cut(s) | 30, 230 |
| BspT107I | GGYRCC | 1 cut(s) | 662 |
| BsrI | ACTGG | 3 cut(s) | 367, 499, 664 |
| BssMI | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| Bst2UI | CCWGG | 1 cut(s) | 581 |
| Bst4CI | ACNGT | 1 cut(s) | 230 |
| Bst6I | CTCTTC | 2 cut(s) | 30, 230 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 401 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 472 |
| BstDEI | CTNAG | 3 cut(s) | 319, 466, 674 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 422 |
| BstF5I | GGATG | 2 cut(s) | 151, 681 |
| BstHHI | GCGC | 1 cut(s) | 681 |
| BstKTI | GATC | 5 cut(s) | 132, 166, 178, 265, 328 |
| BstMBI | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 401 |
| BstNI | CCWGG | 1 cut(s) | 581 |
| BstNSI | RCATGY | 2 cut(s) | 44, 572 |
| BstSCI | CCNGG | 1 cut(s) | 579 |
| BstSFI | CTRYAG | 1 cut(s) | 393 |
| BstV1I | GCAGC | 2 cut(s) | 407, 594 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| BsuI | GTATCC | 1 cut(s) | 218 |
| BtsCI | GGATG | 2 cut(s) | 151, 681 |
| BtsI | GCAGTG | 1 cut(s) | 224 |
| BtsIMutI | CAGTG | 1 cut(s) | 224 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 472 |
| CaiI | CAGNNNCTG | 1 cut(s) | 401 |
| CfoI | GCGC | 1 cut(s) | 681 |
| Cfr13I | GGNCC | 1 cut(s) | 461 |
| Csp6I | GTAC | 2 cut(s) | 566, 663 |
| CviAII | CATG | 3 cut(s) | 41, 75, 569 |
| CviJI | RGCY | 7 cut(s) | 240, 323, 338, 398, 441, 584, 673 |
| CviKI_1 | RGCY | 7 cut(s) | 240, 323, 338, 398, 441, 584, 673 |
| CviQI | GTAC | 2 cut(s) | 566, 663 |
| DdeI | CTNAG | 3 cut(s) | 319, 466, 674 |
| DpnI | GATC | 5 cut(s) | 131, 165, 177, 264, 327 |
| DpnII | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| Eam1104I | CTCTTC | 2 cut(s) | 30, 230 |
| EarI | CTCTTC | 2 cut(s) | 30, 230 |
| Ecl136II | GAGCTC | 1 cut(s) | 673 |
| Eco24I | GRGCYC | 1 cut(s) | 675 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco53kI | GAGCTC | 1 cut(s) | 673 |
| Eco88I | CYCGRG | 1 cut(s) | 523 |
| EcoICRI | GAGCTC | 1 cut(s) | 673 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 422 |
| EcoO109I | RGGNCCY | 1 cut(s) | 461 |
| EcoRII | CCWGG | 1 cut(s) | 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 675 |
| FaeI | CATG | 3 cut(s) | 44, 78, 572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 224, 256 |
| FaqI | GGGAC | 1 cut(s) | 447 |
| FatI | CATG | 3 cut(s) | 40, 74, 568 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 3 cut(s) | 72, 396, 608 |
| FokI | GGATG | 2 cut(s) | 138, 668 |
| FriOI | GRGCYC | 1 cut(s) | 675 |
| Fsp4HI | GCNGC | 3 cut(s) | 72, 396, 608 |
| FspBI | CTAG | 1 cut(s) | 546 |
| GlaI | GCGC | 1 cut(s) | 680 |
| GluI | GCNGC | 3 cut(s) | 72, 396, 608 |
| HhaI | GCGC | 1 cut(s) | 681 |
| Hin1II | CATG | 3 cut(s) | 44, 78, 572 |
| Hin6I | GCGC | 1 cut(s) | 679 |
| HinP1I | GCGC | 1 cut(s) | 679 |
| HinfI | GANTC | 3 cut(s) | 193, 409, 598 |
| HphI | GGTGA | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 2 cut(s) | 297, 603 |
| Hpy188III | TCNNGA | 6 cut(s) | 54, 155, 179, 260, 546, 685 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyCH4III | ACNGT | 1 cut(s) | 230 |
| HpyCH4V | TGCA | 6 cut(s) | 343, 387, 395, 404, 496, 640 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 401 |
| HpyF3I | CTNAG | 3 cut(s) | 319, 466, 674 |
| Hsp92II | CATG | 3 cut(s) | 44, 78, 572 |
| HspAI | GCGC | 1 cut(s) | 679 |
| KflI | GGGWCCC | 1 cut(s) | 461 |
| KpnI | GGTACC | 1 cut(s) | 666 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| Kzo9I | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| LguI | GCTCTTC | 2 cut(s) | 30, 230 |
| LmnI | GCTCC | 2 cut(s) | 335, 615 |
| Lsp1109I | GCAGC | 2 cut(s) | 407, 594 |
| LweI | GCATC | 4 cut(s) | 90, 340, 594, 690 |
| MaeI | CTAG | 1 cut(s) | 546 |
| MalI | GATC | 5 cut(s) | 131, 165, 177, 264, 327 |
| MboI | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| MboII | GAAGA | 6 cut(s) | 44, 47, 247, 284, 712, 715 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MhlI | GDGCHC | 1 cut(s) | 675 |
| MluCI | AATT | 2 cut(s) | 81, 485 |
| MlyI | GAGTC | 1 cut(s) | 592 |
| MnlI | CCTC | 4 cut(s) | 418, 475, 542, 545 |
| MroXI | GAANNNNTTC | 2 cut(s) | 239, 255 |
| MseI | TTAA | 1 cut(s) | 480 |
| MslI | CAYNNNNRTG | 2 cut(s) | 348, 420 |
| MspR9I | CCNGG | 1 cut(s) | 581 |
| MvaI | CCWGG | 1 cut(s) | 581 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 401 |
| NdeII | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| NlaIII | CATG | 3 cut(s) | 44, 78, 572 |
| NlaIV | GGNNCC | 3 cut(s) | 462, 463, 664 |
| NspI | RCATGY | 2 cut(s) | 44, 572 |
| OliI | CACNNNNGTG | 1 cut(s) | 420 |
| PaeI | GCATGC | 1 cut(s) | 44 |
| PciI | ACATGT | 1 cut(s) | 568 |
| PciSI | GCTCTTC | 2 cut(s) | 30, 230 |
| PdmI | GAANNNNTTC | 2 cut(s) | 239, 255 |
| PfeI | GAWTC | 2 cut(s) | 193, 409 |
| PkrI | GCNGC | 3 cut(s) | 73, 397, 609 |
| PleI | GAGTC | 1 cut(s) | 592 |
| PpsI | GAGTC | 1 cut(s) | 592 |
| PpuMI | RGGWCCY | 1 cut(s) | 461 |
| PscI | ACATGT | 1 cut(s) | 568 |
| Psp124BI | GAGCTC | 1 cut(s) | 675 |
| Psp5II | RGGWCCY | 1 cut(s) | 461 |
| Psp6I | CCWGG | 1 cut(s) | 579 |
| PspGI | CCWGG | 1 cut(s) | 579 |
| PspN4I | GGNNCC | 3 cut(s) | 462, 463, 664 |
| PspPI | GGNCC | 1 cut(s) | 461 |
| PspPPI | RGGWCCY | 1 cut(s) | 461 |
| PstI | CTGCAG | 1 cut(s) | 397 |
| PstNI | CAGNNNCTG | 1 cut(s) | 401 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| RsaI | GTAC | 2 cut(s) | 567, 664 |
| RsaNI | GTAC | 2 cut(s) | 566, 663 |
| RseI | CAYNNNNRTG | 2 cut(s) | 348, 420 |
| SacI | GAGCTC | 1 cut(s) | 675 |
| SapI | GCTCTTC | 2 cut(s) | 30, 230 |
| SaqAI | TTAA | 1 cut(s) | 480 |
| SatI | GCNGC | 3 cut(s) | 72, 396, 608 |
| Sau3AI | GATC | 5 cut(s) | 129, 163, 175, 262, 325 |
| Sau96I | GGNCC | 1 cut(s) | 461 |
| SchI | GAGTC | 1 cut(s) | 592 |
| ScrFI | CCNGG | 1 cut(s) | 581 |
| SduI | GDGCHC | 1 cut(s) | 675 |
| SetI | ASST | 8 cut(s) | 242, 325, 340, 400, 420, 443, 582, 675 |
| SfaNI | GCATC | 4 cut(s) | 90, 340, 594, 690 |
| SfcI | CTRYAG | 1 cut(s) | 393 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 348, 420 |
| SmlI | CTYRAG | 1 cut(s) | 133 |
| SmoI | CTYRAG | 1 cut(s) | 133 |
| SphI | GCATGC | 1 cut(s) | 44 |
| Sse9I | AATT | 2 cut(s) | 81, 485 |
| SsiI | CCGC | 3 cut(s) | 71, 306, 333 |
| SspMI | CTAG | 1 cut(s) | 546 |
| SstI | GAGCTC | 1 cut(s) | 675 |
| StyD4I | CCNGG | 1 cut(s) | 579 |
| TaaI | ACNGT | 1 cut(s) | 230 |
| TaqI | TCGA | 2 cut(s) | 25, 87 |
| TasI | AATT | 2 cut(s) | 81, 485 |
| TatI | WGTACW | 1 cut(s) | 565 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 2 cut(s) | 193, 409 |
| Tru1I | TTAA | 1 cut(s) | 480 |
| Tru9I | TTAA | 1 cut(s) | 480 |
| TscAI | CASTG | 1 cut(s) | 224 |
| TseI | GCWGC | 2 cut(s) | 395, 607 |
| TspDTI | ATGAA | 5 cut(s) | 140, 185, 225, 374, 498 |
| TspGWI | ACGGA | 1 cut(s) | 233 |
| TspRI | CASTG | 1 cut(s) | 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 422 |
| XbaI | TCTAGA | 1 cut(s) | 545 |
| XceI | RCATGY | 2 cut(s) | 44, 572 |
| XmnI | GAANNNNTTC | 2 cut(s) | 239, 255 |
| XspI | CTAG | 1 cut(s) | 546 |