Rmu_sc0002179.1_g000011

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002179.1
OG0000123
Physical Location & Seq
Forward (+)
58335 .. 59497
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002179.1_g000011.1.cds

Sequence Viewer

Length: 1068 bp
atgatgacagaggagacgatggctcctccgatactttctgaggaggccgttgtgagccttgatggaggagaggatgcgatccacgactcgtttttctacttatgtggccggctcttgtccaataagaaggtggtgatcccatcgttttcgcaagaggaggaggacatcttcgtcttccaattcaaggatagggaggtgaagaatcaggttctttctggaggcccatggttctacaataactccatgctgctactagcagattatgacagtattttggctctcgatgaggtaatgctgcactctcttgaggtttcggtggcggtgagaggcttgcgtatagctatgcgcaacgagaaggagctaacgatgattggtcgtgctctggggactttcgttcggattgaccatggagctgtgcggaggaaagacacggttcagaggatctgtgtgatccaggatgtgcgccggcgaatatgggagcggcggcagtttgcgttctcgtcgacggtttcggtgtgggtagagctccagtacgagaagtgtcatgggctttacacggcatgtggaatctttaggcatggcggtgggctttgtgataagcgactggaggcggaggcgtcgctggaggtgccggatgttgtggagtcgggttgtgcaggtcatgggaaggagatggtgccggcaggaagtggtttgtcatcggaggtggctgtcatggcgttggtgatggtggatgggtcggcgttgacggctgaaagaattgcagcgttggttgctccggaaaacgcgagaaaccctaattatgaattagggttgaccgcaaggttgactgggctaccatattctgggctgggcctcgtggtagacaaggagggatctgttggaaaatggccaaagttggctttgggttctgaaactggcccaaagttggctttaggagtgaaaaagaagagtttaaagccaggtttggcatttatacctccggaatttcagcttggcgagttggtggtggtcccgatctcaagtgcgccagctctaaagaagaggggtcgtccttctagatgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

355

Amino Acids

38.81

Weight (kDa)

6.36

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 647
AccB1I GGYRCC 2 cut(s) 628, 676
AccB7I CCANNNNNTGG 1 cut(s) 845
AccBSI CCGCTC 1 cut(s) 481
AccI GTMKAC 2 cut(s) 503, 864
AccII CGCG 1 cut(s) 788
AccIII TCCGGA 2 cut(s) 778, 982
AciI CCGC 7 cut(s) 320, 418, 481, 484, 582, 611, 819
AclWI GGATC 5 cut(s) 73, 130, 445, 449, 883
AcoI YGGCCR 2 cut(s) 106, 890
AcsI RAATTY 1 cut(s) 986
AcyI GRCGYC 1 cut(s) 617
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 3 cut(s) 184, 845, 928
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 2 cut(s) 453, 961
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AluBI AGCT 6 cut(s) 341, 361, 413, 526, 994, 1034
AluI AGCT 6 cut(s) 341, 361, 413, 526, 994, 1034
Alw21I GWGCWC 2 cut(s) 382, 528
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 5 cut(s) 73, 130, 445, 449, 883
Aor13HI TCCGGA 2 cut(s) 778, 982
AoxI GGCC 6 cut(s) 45, 106, 220, 853, 890, 919
ApeKI GCWGC 3 cut(s) 247, 295, 764
ApoI RAATTY 1 cut(s) 986
AspLEI GCGC 3 cut(s) 348, 465, 1030
AspS9I GGNCC 4 cut(s) 221, 853, 920, 1012
AsuHPI GGTGA 4 cut(s) 145, 208, 334, 736
AvaII GGWCC 1 cut(s) 1012
BalI TGGCCA 1 cut(s) 892
BanI GGYRCC 2 cut(s) 628, 676
BanII GRGCYC 1 cut(s) 528
BauI CACGAG 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 382, 528
BbvI GCAGC 3 cut(s) 234, 282, 776
BccI CCATC 6 cut(s) 13, 56, 148, 667, 721, 728
BceAI ACGGC 3 cut(s) 32, 573, 765
BciT130I CCWGG 2 cut(s) 455, 963
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 254, 1059
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 5 cut(s) 248, 296, 482, 485, 765
BlsI GCNGC 5 cut(s) 249, 297, 483, 486, 766
Bme1390I CCNGG 2 cut(s) 455, 963
Bme18I GGWCC 1 cut(s) 1012
BmgT120I GGNCC 4 cut(s) 221, 853, 920, 1012
BmiI GGNNCC 4 cut(s) 24, 630, 678, 1014
BmrFI CCNGG 2 cut(s) 455, 963
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 2 cut(s) 64, 1052
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 166
BpmI CTGGAG 4 cut(s) 237, 512, 626, 644
BpuEI CTTGAG 2 cut(s) 326, 1006
BsaHI GRCGYC 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 224, 406
BsaWI WCCGGW 2 cut(s) 778, 982
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 845, 928
Bse118I RCCGGY 3 cut(s) 108, 465, 679
Bse1I ACTGG 4 cut(s) 529, 609, 835, 922
BseAI TCCGGA 2 cut(s) 778, 982
BseBI CCWGG 2 cut(s) 455, 963
BseDI CCNNGG 2 cut(s) 224, 406
BseGI GGATG 4 cut(s) 79, 463, 640, 739
BseLI CCNNNNNNNGG 3 cut(s) 184, 845, 928
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 4 cut(s) 529, 609, 835, 922
BseRI GAGGAG 6 cut(s) 15, 26, 56, 81, 170, 173
BseXI GCAGC 3 cut(s) 234, 282, 776
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 2 cut(s) 281, 675
Bsh1236I CGCG 1 cut(s) 788
BshFI GGCC 6 cut(s) 47, 108, 222, 855, 892, 921
BshNI GGYRCC 2 cut(s) 628, 676
BsiHKAI GWGCWC 2 cut(s) 382, 528
BsiSI CCGG 6 cut(s) 109, 466, 632, 680, 779, 983
BslFI GGGAC 2 cut(s) 400, 998
BslI CCNNNNNNNGG 3 cut(s) 184, 845, 928
BsmAI GTCTC 1 cut(s) 8
BsmBI CGTCTC 1 cut(s) 8
BsmFI GGGAC 2 cut(s) 400, 998
BsnI GGCC 6 cut(s) 47, 108, 222, 855, 892, 921
Bsp1286I GDGCHC 2 cut(s) 382, 528
Bsp13I TCCGGA 2 cut(s) 778, 982
Bsp143I GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
Bsp19I CCATGG 2 cut(s) 224, 406
BspACI CCGC 7 cut(s) 320, 418, 481, 484, 582, 611, 819
BspANI GGCC 6 cut(s) 47, 108, 222, 855, 892, 921
BspCNI CTCAG 1 cut(s) 31
BspEI TCCGGA 2 cut(s) 778, 982
BspFNI CGCG 1 cut(s) 788
BspLI GGNNCC 4 cut(s) 24, 630, 678, 1014
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 5 cut(s) 73, 130, 445, 449, 883
BspT107I GGYRCC 2 cut(s) 628, 676
BsrBI CCGCTC 1 cut(s) 481
BsrFI RCCGGY 3 cut(s) 108, 465, 679
BsrI ACTGG 4 cut(s) 529, 609, 835, 922
BssAI RCCGGY 3 cut(s) 108, 465, 679
BssECI CCNNGG 2 cut(s) 224, 406
BssMI GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
BssNI GRCGYC 1 cut(s) 617
BssSI CACGAG 1 cut(s) 857
BssT1I CCWWGG 2 cut(s) 224, 406
Bst2BI CACGAG 1 cut(s) 857
Bst2UI CCWGG 2 cut(s) 455, 963
Bst4CI ACNGT 3 cut(s) 269, 433, 508
Bst6I CTCTTC 2 cut(s) 944, 1037
BstACI GRCGYC 1 cut(s) 617
BstC8I GCNNGC 5 cut(s) 110, 332, 467, 681, 1032
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 2 cut(s) 224, 406
BstF5I GGATG 4 cut(s) 79, 463, 640, 739
BstFNI CGCG 1 cut(s) 788
BstHHI GCGC 3 cut(s) 348, 465, 1030
BstKTI GATC 6 cut(s) 81, 138, 444, 453, 878, 1020
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
BstMWI GCNNNNNNNGC 4 cut(s) 628, 716, 749, 773
BstNI CCWGG 2 cut(s) 455, 963
BstNSI RCATGY 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 453, 961
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 3 cut(s) 234, 282, 776
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 441, 875
BstYI RGATCY 2 cut(s) 441, 875
BsuRI GGCC 6 cut(s) 47, 108, 222, 855, 892, 921
BtgI CCRYGG 2 cut(s) 224, 406
BtsCI GGATG 4 cut(s) 79, 463, 640, 739
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 5 cut(s) 110, 332, 467, 681, 1032
CfoI GCGC 3 cut(s) 348, 465, 1030
Cfr10I RCCGGY 3 cut(s) 108, 465, 679
Cfr13I GGNCC 4 cut(s) 221, 853, 920, 1012
CseI GACGC 1 cut(s) 606
Csp6I GTAC 1 cut(s) 532
CviAII CATG 8 cut(s) 225, 244, 407, 545, 561, 578, 662, 715
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 1 cut(s) 39
DpnI GATC 6 cut(s) 80, 137, 443, 452, 877, 1019
DpnII GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
DraI TTTAAA 1 cut(s) 957
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 106, 890
Eam1104I CTCTTC 2 cut(s) 944, 1037
EarI CTCTTC 2 cut(s) 944, 1037
EciI GGCGGA 1 cut(s) 626
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 224, 406
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 1012
Eco53kI GAGCTC 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 453, 961
EcoT14I CCWWGG 2 cut(s) 224, 406
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 2 cut(s) 224, 406
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 8 cut(s) 228, 247, 410, 548, 564, 581, 665, 718
FaqI GGGAC 2 cut(s) 400, 998
FatI CATG 8 cut(s) 224, 243, 406, 544, 560, 577, 661, 714
FblI GTMKAC 2 cut(s) 503, 864
Fnu4HI GCNGC 5 cut(s) 248, 296, 482, 485, 765
FokI GGATG 4 cut(s) 86, 470, 647, 746
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 5 cut(s) 248, 296, 482, 485, 765
FspBI CTAG 2 cut(s) 254, 1059
FspI TGCGCA 1 cut(s) 347
GlaI GCGC 3 cut(s) 347, 464, 1029
GluI GCNGC 5 cut(s) 248, 296, 482, 485, 765
GsaI CCCAGC 1 cut(s) 854
GsuI CTGGAG 4 cut(s) 237, 512, 626, 644
HaeIII GGCC 6 cut(s) 47, 108, 222, 855, 892, 921
HapII CCGG 6 cut(s) 109, 466, 632, 680, 779, 983
HgaI GACGC 1 cut(s) 606
HhaI GCGC 3 cut(s) 348, 465, 1030
Hin1I GRCGYC 1 cut(s) 617
Hin1II CATG 8 cut(s) 228, 247, 410, 548, 564, 581, 665, 718
Hin6I GCGC 3 cut(s) 346, 463, 1028
HinP1I GCGC 3 cut(s) 346, 463, 1028
HincII GTYRAC 4 cut(s) 504, 747, 816, 828
HindII GTYRAC 4 cut(s) 504, 747, 816, 828
HinfI GANTC 4 cut(s) 86, 202, 567, 644
HpaII CCGG 6 cut(s) 109, 466, 632, 680, 779, 983
HphI GGTGA 4 cut(s) 145, 208, 334, 736
Hpy166II GTNNAC 5 cut(s) 504, 747, 816, 828, 865
Hpy188I TCNGA 6 cut(s) 30, 40, 399, 438, 703, 913
Hpy188III TCNNGA 7 cut(s) 216, 281, 305, 779, 983, 1015, 1059
Hpy8I GTNNAC 5 cut(s) 504, 747, 816, 828, 865
Hpy99I CGWCG 3 cut(s) 505, 508, 622
HpyAV CCTTC 4 cut(s) 121, 349, 661, 1065
HpyCH4III ACNGT 3 cut(s) 269, 433, 508
HpyCH4V TGCA 3 cut(s) 298, 656, 764
HpyF10VI GCNNNNNNNGC 4 cut(s) 628, 716, 749, 773
HpyF3I CTNAG 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 617
Hsp92II CATG 8 cut(s) 228, 247, 410, 548, 564, 581, 665, 718
HspAI GCGC 3 cut(s) 346, 463, 1028
Kpn2I TCCGGA 2 cut(s) 778, 982
KroI GCCGGC 3 cut(s) 108, 465, 679
KroNI GCCGGC 3 cut(s) 110, 467, 681
Kzo9I GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
LmnI GCTCC 6 cut(s) 28, 358, 410, 478, 531, 781
Lsp1109I GCAGC 3 cut(s) 234, 282, 776
LweI GCATC 2 cut(s) 64, 1052
MaeI CTAG 2 cut(s) 254, 1059
MalI GATC 6 cut(s) 80, 137, 443, 452, 877, 1019
MbiI CCGCTC 1 cut(s) 481
MboI GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
MboII GAAGA 5 cut(s) 160, 166, 211, 961, 1054
MflI RGATCY 2 cut(s) 441, 875
MhlI GDGCHC 2 cut(s) 382, 528
MlsI TGGCCA 1 cut(s) 892
MluCI AATT 5 cut(s) 179, 759, 799, 806, 986
MluNI TGGCCA 1 cut(s) 892
MlyI GAGTC 2 cut(s) 80, 653
MmeI TCCRAC 1 cut(s) 862
Mox20I TGGCCA 1 cut(s) 892
MreI CGCCGGCG 1 cut(s) 465
MroI TCCGGA 2 cut(s) 778, 982
MroNI GCCGGC 3 cut(s) 108, 465, 679
MscI TGGCCA 1 cut(s) 892
MseI TTAA 1 cut(s) 956
MslI CAYNNNNRTG 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 892
MspI CCGG 6 cut(s) 109, 466, 632, 680, 779, 983
MspR9I CCNGG 2 cut(s) 455, 963
MvaI CCWGG 2 cut(s) 455, 963
MvnI CGCG 1 cut(s) 788
MwoI GCNNNNNNNGC 4 cut(s) 628, 716, 749, 773
NaeI GCCGGC 3 cut(s) 110, 467, 681
NcoI CCATGG 2 cut(s) 224, 406
NdeII GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
NgoMIV GCCGGC 3 cut(s) 108, 465, 679
NlaIII CATG 8 cut(s) 228, 247, 410, 548, 564, 581, 665, 718
NlaIV GGNNCC 4 cut(s) 24, 630, 678, 1014
NsbI TGCGCA 1 cut(s) 347
NspI RCATGY 1 cut(s) 564
PdiI GCCGGC 3 cut(s) 110, 467, 681
PfeI GAWTC 2 cut(s) 202, 567
PflMI CCANNNNNTGG 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 453
PkrI GCNGC 5 cut(s) 249, 297, 483, 486, 766
PleI GAGTC 2 cut(s) 80, 652
PpsI GAGTC 2 cut(s) 80, 652
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 453, 961
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 2 cut(s) 453, 961
PspN4I GGNNCC 4 cut(s) 24, 630, 678, 1014
PspPI GGNCC 4 cut(s) 221, 853, 920, 1012
PsuI RGATCY 2 cut(s) 441, 875
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
RseI CAYNNNNRTG 1 cut(s) 582
SacI GAGCTC 1 cut(s) 528
SalI GTCGAC 1 cut(s) 502
SaqAI TTAA 1 cut(s) 956
SatI GCNGC 5 cut(s) 248, 296, 482, 485, 765
Sau3AI GATC 6 cut(s) 78, 135, 441, 450, 875, 1017
Sau96I GGNCC 4 cut(s) 221, 853, 920, 1012
SchI GAGTC 2 cut(s) 80, 653
ScrFI CCNGG 2 cut(s) 455, 963
SduI GDGCHC 2 cut(s) 382, 528
SfaNI GCATC 2 cut(s) 64, 1052
SgrAI CRCCGGYG 1 cut(s) 465
SgrDI CGTCGACG 1 cut(s) 502
SinI GGWCC 1 cut(s) 1012
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 305, 1021
SmoI CTYRAG 2 cut(s) 305, 1021
Sse9I AATT 5 cut(s) 179, 759, 799, 806, 986
SsiI CCGC 7 cut(s) 320, 418, 481, 484, 582, 611, 819
SspMI CTAG 2 cut(s) 254, 1059
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 453, 961
StyI CCWWGG 2 cut(s) 224, 406
TaaI ACNGT 3 cut(s) 269, 433, 508
TaqI TCGA 2 cut(s) 282, 503
TasI AATT 5 cut(s) 179, 759, 799, 806, 986
TauI GCSGC 2 cut(s) 484, 487
TfiI GAWTC 2 cut(s) 202, 567
Tru1I TTAA 1 cut(s) 956
Tru9I TTAA 1 cut(s) 956
TseI GCWGC 3 cut(s) 247, 295, 764
TspDTI ATGAA 1 cut(s) 819
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 1012
XapI RAATTY 1 cut(s) 986
XbaI TCTAGA 1 cut(s) 1058
XceI RCATGY 1 cut(s) 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 2 cut(s) 503, 864
XspI CTAG 2 cut(s) 254, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.