FvH4_4g07081

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000123
Physical Location & Seq
Forward (+)
6479593 .. 6480117
525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07081.t1

Sequence Viewer

Length: 525 bp
ATGACCGCGGCTAGGACTTCAACGAGGCTTTCTCTGCTGCACGAGAATTATGTGAAGTTGATTCAAGGAAAGAAGGCGATCATGGATCTTTTCTTTTGCCTTTGCGGCCAACTACTTACGCCGAGGAGTGTGCCAATTCCGTTGTTTACAACGGTGATCTCAGGCATATGGGGCTTAAAGAAGAGGATCTTGGTTCGAGAGCAGGAAAGCGGCATCTATATCTTTCAATTCAAAGAGGTGCAAACGAGGGATCACGCCCTCCATGGTGGGCCATGGTTTTACGGCAACTCTATCCTACTTTTGGCGGAATACGATGGGGTGTGTGACCATAAAACAATGTCGCTGCAGACTTTGAAAATCTGGGTGGCAATGAAGGGTTTACGTATTGCTATGCGGAAACCTGAATCCCTCACTCTGCTCGGGAATGCTTTGGGGCATTTCATGCATTTCGATCAACAAGCTATGGAGAGAAAGGAGGTCGTCCACAAGATTAGAGTCCGGCATGAGCTTAAAACTCGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

175

Amino Acids

20.06

Weight (kDa)

9.87

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 33 - 105 1e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 6 cut(s) 6, 8, 105, 210, 305, 394
AclWI GGATC 3 cut(s) 93, 194, 258
AcoI YGGCCR 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 12, 301
AgsI TTSAA 5 cut(s) 21, 65, 227, 232, 355
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 461, 508
AluI AGCT 2 cut(s) 461, 508
AlwI GGATC 3 cut(s) 93, 194, 258
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 106, 269
ApeKI GCWGC 2 cut(s) 37, 343
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 419
BauI CACGAG 1 cut(s) 41
BbvI GCAGC 2 cut(s) 24, 330
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 105
BisI GCNGC 5 cut(s) 9, 38, 106, 211, 344
BlsI GCNGC 5 cut(s) 10, 39, 107, 212, 345
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 269
BmsI GCATC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BsaAI YACGTR 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 6, 122, 262, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 301
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 6, 122, 262, 272
BseLI CCNNNNNNNGG 2 cut(s) 12, 301
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 24, 330
BsgI GTGCAG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 2 cut(s) 108, 271
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 1 cut(s) 499
BslI CCNNNNNNNGG 2 cut(s) 12, 301
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 108, 271
BsoBI CYCGRG 1 cut(s) 419
Bsp143I GATC 6 cut(s) 78, 85, 156, 186, 250, 451
Bsp19I CCATGG 2 cut(s) 262, 272
BspACI CCGC 6 cut(s) 6, 8, 105, 210, 305, 394
BspANI GGCC 2 cut(s) 108, 271
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 8
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 3 cut(s) 93, 194, 258
BsrDI GCAATG 1 cut(s) 375
BssECI CCNNGG 4 cut(s) 6, 122, 262, 272
BssMI GATC 6 cut(s) 78, 85, 156, 186, 250, 451
BssSI CACGAG 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 262, 272
Bst2BI CACGAG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 176
BstAPI GCANNNNNTGC 1 cut(s) 442
BstBAI YACGTR 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 3 cut(s) 6, 262, 272
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 6 cut(s) 81, 88, 159, 189, 253, 454
BstMBI GATC 6 cut(s) 78, 85, 156, 186, 250, 451
BstMWI GCNNNNNNNGC 4 cut(s) 34, 105, 171, 442
BstSFI CTRYAG 1 cut(s) 344
BstSNI TACGTA 1 cut(s) 383
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 24, 330
BstX2I RGATCY 2 cut(s) 85, 186
BstYI RGATCY 2 cut(s) 85, 186
BsuRI GGCC 2 cut(s) 108, 271
BtgI CCRYGG 3 cut(s) 6, 262, 272
Cfr13I GGNCC 1 cut(s) 269
Cfr42I CCGCGG 1 cut(s) 9
CviAII CATG 5 cut(s) 82, 263, 273, 442, 503
CviJI RGCY 7 cut(s) 11, 28, 108, 174, 271, 461, 508
CviKI_1 RGCY 7 cut(s) 11, 28, 108, 174, 271, 461, 508
DdeI CTNAG 1 cut(s) 160
DpnI GATC 6 cut(s) 80, 87, 158, 188, 252, 453
DpnII GATC 6 cut(s) 78, 85, 156, 186, 250, 451
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 320
Eco105I TACGTA 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 262, 272
Eco88I CYCGRG 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 262, 272
EcoT22I ATGCAT 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 262, 272
FaeI CATG 5 cut(s) 85, 266, 276, 445, 506
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 5 cut(s) 81, 262, 272, 441, 502
FauNDI CATATG 1 cut(s) 167
Fnu4HI GCNGC 5 cut(s) 9, 38, 106, 211, 344
Fsp4HI GCNGC 5 cut(s) 9, 38, 106, 211, 344
FspBI CTAG 1 cut(s) 12
GluI GCNGC 5 cut(s) 9, 38, 106, 211, 344
HaeIII GGCC 2 cut(s) 108, 271
HapII CCGG 1 cut(s) 499
Hin1II CATG 5 cut(s) 85, 266, 276, 445, 506
HinfI GANTC 3 cut(s) 61, 404, 495
HpaII CCGG 1 cut(s) 499
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 3 cut(s) 147, 380, 484
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 2 cut(s) 197, 421
Hpy8I GTNNAC 3 cut(s) 147, 380, 484
HpyAV CCTTC 2 cut(s) 67, 367
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 40, 241, 346, 445
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 105, 171, 442
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 5 cut(s) 85, 266, 276, 445, 506
KspI CCGCGG 1 cut(s) 9
Kzo9I GATC 6 cut(s) 78, 85, 156, 186, 250, 451
LpnPI CCDG 5 cut(s) 147, 188, 346, 414, 512
Lsp1109I GCAGC 2 cut(s) 24, 330
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 323
MalI GATC 6 cut(s) 80, 87, 158, 188, 252, 453
MboI GATC 6 cut(s) 78, 85, 156, 186, 250, 451
MboII GAAGA 1 cut(s) 193
MflI RGATCY 2 cut(s) 85, 186
MluCI AATT 3 cut(s) 46, 135, 227
MlyI GAGTC 1 cut(s) 504
MnlI CCTC 8 cut(s) 18, 117, 177, 229, 240, 269, 419, 469
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 2 cut(s) 176, 510
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 499
Mva1269I GAATGC 1 cut(s) 430
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 4 cut(s) 34, 105, 171, 442
NcoI CCATGG 2 cut(s) 262, 272
NdeI CATATG 1 cut(s) 167
NdeII GATC 6 cut(s) 78, 85, 156, 186, 250, 451
NlaIII CATG 5 cut(s) 85, 266, 276, 445, 506
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 447
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 61, 404
PkrI GCNGC 5 cut(s) 10, 39, 107, 212, 345
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
Ppu21I YACGTR 1 cut(s) 383
PspPI GGNCC 1 cut(s) 269
PstI CTGCAG 1 cut(s) 348
PsuI RGATCY 2 cut(s) 85, 186
SacII CCGCGG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 176, 510
SatI GCNGC 5 cut(s) 9, 38, 106, 211, 344
Sau3AI GATC 6 cut(s) 78, 85, 156, 186, 250, 451
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 504
SetI ASST 6 cut(s) 240, 385, 403, 463, 480, 510
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 344
Sfr303I CCGCGG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 9
SnaBI TACGTA 1 cut(s) 383
Sse9I AATT 3 cut(s) 46, 135, 227
SsiI CCGC 6 cut(s) 6, 8, 105, 210, 305, 394
SspMI CTAG 1 cut(s) 12
StyI CCWWGG 2 cut(s) 262, 272
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 196, 450
TasI AATT 3 cut(s) 46, 135, 227
TauI GCSGC 3 cut(s) 11, 108, 213
TfiI GAWTC 2 cut(s) 61, 404
Tru1I TTAA 2 cut(s) 176, 510
Tru9I TTAA 2 cut(s) 176, 510
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 37, 343
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 386, 430
TspGWI ACGGA 1 cut(s) 129
XspI CTAG 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.