Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 9 - 45 | 1.9e-06 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 38 |
| Acc16I | TGCGCA | 1 cut(s) | 215 |
| AccI | GTMKAC | 1 cut(s) | 270 |
| AciI | CCGC | 1 cut(s) | 67 |
| AcoI | YGGCCR | 2 cut(s) | 186, 241 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 52, 195, 250 |
| AgsI | TTSAA | 1 cut(s) | 52 |
| AjnI | CCWGG | 1 cut(s) | 273 |
| AluBI | AGCT | 1 cut(s) | 209 |
| AluI | AGCT | 1 cut(s) | 209 |
| Alw21I | GWGCWC | 1 cut(s) | 250 |
| AoxI | GGCC | 2 cut(s) | 186, 241 |
| ApeKI | GCWGC | 2 cut(s) | 163, 199 |
| AspLEI | GCGC | 1 cut(s) | 216 |
| AspS9I | GGNCC | 2 cut(s) | 89, 301 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| AvaII | GGWCC | 2 cut(s) | 89, 301 |
| BbsI | GAAGAC | 1 cut(s) | 34 |
| Bbv12I | GWGCWC | 1 cut(s) | 250 |
| BbvI | GCAGC | 2 cut(s) | 150, 186 |
| BceAI | ACGGC | 2 cut(s) | 173, 228 |
| BciT130I | CCWGG | 1 cut(s) | 275 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BisI | GCNGC | 2 cut(s) | 164, 200 |
| BlsI | GCNGC | 2 cut(s) | 165, 201 |
| Bme1390I | CCNGG | 2 cut(s) | 155, 275 |
| Bme18I | GGWCC | 2 cut(s) | 89, 301 |
| BmgT120I | GGNCC | 2 cut(s) | 89, 301 |
| BmrFI | CCNGG | 2 cut(s) | 155, 275 |
| BmsI | GCATC | 1 cut(s) | 167 |
| BpiI | GAAGAC | 1 cut(s) | 34 |
| BpuEI | CTTGAG | 1 cut(s) | 194 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 2 cut(s) | 92, 274 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 52, 195, 250 |
| Bse3DI | GCAATG | 1 cut(s) | 223 |
| BseBI | CCWGG | 1 cut(s) | 275 |
| BseDI | CCNNGG | 2 cut(s) | 92, 274 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 52, 195, 250 |
| BseMI | GCAATG | 1 cut(s) | 223 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BseXI | GCAGC | 2 cut(s) | 150, 186 |
| BsgI | GTGCAG | 1 cut(s) | 305 |
| BshFI | GGCC | 2 cut(s) | 188, 243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 250 |
| BsiSI | CCGG | 1 cut(s) | 155 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 52, 195, 250 |
| BsnI | GGCC | 2 cut(s) | 188, 243 |
| Bsp1286I | GDGCHC | 1 cut(s) | 250 |
| Bsp143I | GATC | 1 cut(s) | 318 |
| Bsp19I | CCATGG | 1 cut(s) | 92 |
| BspACI | CCGC | 1 cut(s) | 67 |
| BspANI | GGCC | 2 cut(s) | 188, 243 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BsrDI | GCAATG | 1 cut(s) | 223 |
| BssECI | CCNNGG | 2 cut(s) | 92, 274 |
| BssMI | GATC | 1 cut(s) | 318 |
| BssT1I | CCWWGG | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 1 cut(s) | 275 |
| Bst4CI | ACNGT | 1 cut(s) | 301 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstDSI | CCRYGG | 1 cut(s) | 92 |
| BstHHI | GCGC | 1 cut(s) | 216 |
| BstKTI | GATC | 1 cut(s) | 321 |
| BstMBI | GATC | 1 cut(s) | 318 |
| BstNI | CCWGG | 1 cut(s) | 275 |
| BstSCI | CCNGG | 2 cut(s) | 153, 273 |
| BstV1I | GCAGC | 2 cut(s) | 150, 186 |
| BstV2I | GAAGAC | 1 cut(s) | 34 |
| BsuRI | GGCC | 2 cut(s) | 188, 243 |
| BtgI | CCRYGG | 1 cut(s) | 92 |
| BtgZI | GCGATG | 1 cut(s) | 144 |
| BtsI | GCAGTG | 1 cut(s) | 288 |
| BtsIMutI | CAGTG | 2 cut(s) | 227, 288 |
| CfoI | GCGC | 1 cut(s) | 216 |
| Cfr13I | GGNCC | 2 cut(s) | 89, 301 |
| CseI | GACGC | 1 cut(s) | 241 |
| CviAII | CATG | 1 cut(s) | 93 |
| CviJI | RGCY | 4 cut(s) | 188, 199, 209, 243 |
| CviKI_1 | RGCY | 4 cut(s) | 188, 199, 209, 243 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 1 cut(s) | 320 |
| DpnII | GATC | 1 cut(s) | 318 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 38 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 38 |
| EaeI | YGGCCR | 2 cut(s) | 186, 241 |
| Eco130I | CCWWGG | 1 cut(s) | 92 |
| Eco47I | GGWCC | 2 cut(s) | 89, 301 |
| EcoRII | CCWGG | 1 cut(s) | 273 |
| EcoT14I | CCWWGG | 1 cut(s) | 92 |
| ErhI | CCWWGG | 1 cut(s) | 92 |
| FaeI | CATG | 1 cut(s) | 96 |
| FaiI | YATR | 6 cut(s) | 94, 113, 132, 204, 206, 212 |
| FatI | CATG | 1 cut(s) | 92 |
| FblI | GTMKAC | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 2 cut(s) | 164, 200 |
| Fsp4HI | GCNGC | 2 cut(s) | 164, 200 |
| FspI | TGCGCA | 1 cut(s) | 215 |
| GlaI | GCGC | 1 cut(s) | 215 |
| GluI | GCNGC | 2 cut(s) | 164, 200 |
| HaeIII | GGCC | 2 cut(s) | 188, 243 |
| HapII | CCGG | 1 cut(s) | 155 |
| HgaI | GACGC | 1 cut(s) | 241 |
| HhaI | GCGC | 1 cut(s) | 216 |
| Hin1II | CATG | 1 cut(s) | 96 |
| Hin6I | GCGC | 1 cut(s) | 214 |
| HinP1I | GCGC | 1 cut(s) | 214 |
| HincII | GTYRAC | 1 cut(s) | 271 |
| HindII | GTYRAC | 1 cut(s) | 271 |
| HinfI | GANTC | 4 cut(s) | 16, 70, 267, 310 |
| HpaII | CCGG | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 271 |
| Hpy188I | TCNGA | 1 cut(s) | 266 |
| Hpy188III | TCNNGA | 4 cut(s) | 84, 149, 173, 304 |
| Hpy8I | GTNNAC | 1 cut(s) | 271 |
| HpyAV | CCTTC | 2 cut(s) | 187, 217 |
| HpyCH4III | ACNGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 3 cut(s) | 166, 202, 286 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| Hsp92II | CATG | 1 cut(s) | 96 |
| HspAI | GCGC | 1 cut(s) | 214 |
| Kzo9I | GATC | 1 cut(s) | 318 |
| LpnPI | CCDG | 6 cut(s) | 69, 168, 236, 260, 287, 317 |
| Lsp1109I | GCAGC | 2 cut(s) | 150, 186 |
| LweI | GCATC | 1 cut(s) | 167 |
| MalI | GATC | 1 cut(s) | 320 |
| MboI | GATC | 1 cut(s) | 318 |
| MboII | GAAGA | 1 cut(s) | 34 |
| MhlI | GDGCHC | 1 cut(s) | 250 |
| MluCI | AATT | 2 cut(s) | 47, 167 |
| MlyI | GAGTC | 1 cut(s) | 276 |
| MnlI | CCTC | 7 cut(s) | 19, 22, 55, 80, 169, 282, 300 |
| MspI | CCGG | 1 cut(s) | 155 |
| MspR9I | CCNGG | 2 cut(s) | 155, 275 |
| MvaI | CCWGG | 1 cut(s) | 275 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NcoI | CCATGG | 1 cut(s) | 92 |
| NdeII | GATC | 1 cut(s) | 318 |
| NlaIII | CATG | 1 cut(s) | 96 |
| NsbI | TGCGCA | 1 cut(s) | 215 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 267 |
| PfeI | GAWTC | 3 cut(s) | 16, 70, 310 |
| PflFI | GACNNNGTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 2 cut(s) | 165, 201 |
| PleI | GAGTC | 1 cut(s) | 275 |
| PpsI | GAGTC | 1 cut(s) | 275 |
| Psp6I | CCWGG | 1 cut(s) | 273 |
| PspGI | CCWGG | 1 cut(s) | 273 |
| PspPI | GGNCC | 2 cut(s) | 89, 301 |
| PsyI | GACNNNGTC | 1 cut(s) | 299 |
| SalI | GTCGAC | 1 cut(s) | 269 |
| SatI | GCNGC | 2 cut(s) | 164, 200 |
| Sau3AI | GATC | 1 cut(s) | 318 |
| Sau96I | GGNCC | 2 cut(s) | 89, 301 |
| SchI | GAGTC | 1 cut(s) | 276 |
| ScrFI | CCNGG | 2 cut(s) | 155, 275 |
| SduI | GDGCHC | 1 cut(s) | 250 |
| SetI | ASST | 4 cut(s) | 66, 91, 180, 211 |
| SfaNI | GCATC | 1 cut(s) | 167 |
| SinI | GGWCC | 2 cut(s) | 89, 301 |
| SmlI | CTYRAG | 1 cut(s) | 173 |
| SmoI | CTYRAG | 1 cut(s) | 173 |
| Sse9I | AATT | 2 cut(s) | 47, 167 |
| SsiI | CCGC | 1 cut(s) | 67 |
| StyD4I | CCNGG | 2 cut(s) | 153, 273 |
| StyI | CCWWGG | 1 cut(s) | 92 |
| TaaI | ACNGT | 1 cut(s) | 301 |
| TaqI | TCGA | 3 cut(s) | 19, 150, 270 |
| TasI | AATT | 2 cut(s) | 47, 167 |
| TfiI | GAWTC | 3 cut(s) | 16, 70, 310 |
| TscAI | CASTG | 2 cut(s) | 234, 288 |
| TseI | GCWGC | 2 cut(s) | 163, 199 |
| TspGWI | ACGGA | 1 cut(s) | 150 |
| TspRI | CASTG | 2 cut(s) | 234, 288 |
| Tth111I | GACNNNGTC | 1 cut(s) | 299 |
| VpaK11BI | GGWCC | 2 cut(s) | 89, 301 |
| XmiI | GTMKAC | 1 cut(s) | 270 |