Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 338 |
| AccB1I | GGYRCC | 2 cut(s) | 338, 346 |
| AciI | CCGC | 1 cut(s) | 187 |
| AclWI | GGATC | 3 cut(s) | 94, 107, 215 |
| AfaI | GTAC | 2 cut(s) | 7, 340 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 262, 335 |
| AflIII | ACRYGT | 1 cut(s) | 36 |
| AjnI | CCWGG | 1 cut(s) | 288 |
| AleI | CACNNNNGTG | 1 cut(s) | 50 |
| AluBI | AGCT | 1 cut(s) | 178 |
| AluI | AGCT | 1 cut(s) | 178 |
| Alw26I | GTCTC | 1 cut(s) | 363 |
| AlwI | GGATC | 3 cut(s) | 94, 107, 215 |
| ApeKI | GCWGC | 1 cut(s) | 379 |
| Asp718I | GGTACC | 1 cut(s) | 338 |
| AspLEI | GCGC | 2 cut(s) | 123, 379 |
| AspS9I | GGNCC | 2 cut(s) | 109, 286 |
| AsuC2I | CCSGG | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 3 cut(s) | 13, 223, 277 |
| AvaII | GGWCC | 2 cut(s) | 109, 286 |
| BaeGI | GKGCMC | 1 cut(s) | 47 |
| BamHI | GGATCC | 1 cut(s) | 99 |
| BanI | GGYRCC | 2 cut(s) | 338, 346 |
| BanII | GRGCYC | 1 cut(s) | 139 |
| BbvI | GCAGC | 1 cut(s) | 366 |
| BceAI | ACGGC | 2 cut(s) | 283, 313 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 192, 226, 336, 370 |
| BciT130I | CCWGG | 1 cut(s) | 290 |
| BclI | TGATCA | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 25 |
| BcoDI | GTCTC | 1 cut(s) | 363 |
| BfmI | CTRYAG | 1 cut(s) | 380 |
| BfoI | RGCGCY | 1 cut(s) | 380 |
| BisI | GCNGC | 1 cut(s) | 380 |
| BlsI | GCNGC | 1 cut(s) | 381 |
| Bme1390I | CCNGG | 2 cut(s) | 25, 290 |
| Bme18I | GGWCC | 2 cut(s) | 109, 286 |
| BmgT120I | GGNCC | 2 cut(s) | 109, 286 |
| BmiI | GGNNCC | 3 cut(s) | 101, 340, 348 |
| BmrFI | CCNGG | 2 cut(s) | 25, 290 |
| BpmI | CTGGAG | 2 cut(s) | 200, 261 |
| BpuMI | CCSGG | 1 cut(s) | 25 |
| BsaJI | CCNNGG | 2 cut(s) | 202, 342 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 262, 335 |
| Bse1I | ACTGG | 1 cut(s) | 391 |
| BseBI | CCWGG | 1 cut(s) | 290 |
| BseDI | CCNNGG | 2 cut(s) | 202, 342 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 262, 335 |
| BseMII | CTCAG | 1 cut(s) | 107 |
| BseNI | ACTGG | 1 cut(s) | 391 |
| BseSI | GKGCMC | 1 cut(s) | 47 |
| BseXI | GCAGC | 1 cut(s) | 366 |
| BsgI | GTGCAG | 1 cut(s) | 32 |
| BshNI | GGYRCC | 2 cut(s) | 338, 346 |
| BsiSI | CCGG | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 262, 335 |
| BsmAI | GTCTC | 1 cut(s) | 363 |
| BsmBI | CGTCTC | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 139 |
| Bsp143I | GATC | 4 cut(s) | 61, 99, 147, 207 |
| BspACI | CCGC | 1 cut(s) | 187 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 3 cut(s) | 101, 340, 348 |
| BspMAI | CTGCAG | 1 cut(s) | 384 |
| BspPI | GGATC | 3 cut(s) | 94, 107, 215 |
| BspT107I | GGYRCC | 2 cut(s) | 338, 346 |
| BsrI | ACTGG | 1 cut(s) | 391 |
| BssECI | CCNNGG | 2 cut(s) | 202, 342 |
| BssMI | GATC | 4 cut(s) | 61, 99, 147, 207 |
| Bst2UI | CCWGG | 1 cut(s) | 290 |
| Bst4CI | ACNGT | 3 cut(s) | 10, 343, 351 |
| BstC8I | GCNNGC | 1 cut(s) | 162 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstDSI | CCRYGG | 1 cut(s) | 342 |
| BstH2I | RGCGCY | 1 cut(s) | 380 |
| BstHHI | GCGC | 2 cut(s) | 123, 379 |
| BstKTI | GATC | 4 cut(s) | 64, 102, 150, 210 |
| BstMAI | GTCTC | 1 cut(s) | 363 |
| BstMBI | GATC | 4 cut(s) | 61, 99, 147, 207 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 10 |
| BstNI | CCWGG | 1 cut(s) | 290 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSCI | CCNGG | 2 cut(s) | 23, 288 |
| BstSFI | CTRYAG | 1 cut(s) | 380 |
| BstSLI | GKGCMC | 1 cut(s) | 47 |
| BstV1I | GCAGC | 1 cut(s) | 366 |
| BstX2I | RGATCY | 2 cut(s) | 99, 207 |
| BstYI | RGATCY | 2 cut(s) | 99, 207 |
| BtgI | CCRYGG | 1 cut(s) | 342 |
| Cac8I | GCNNGC | 1 cut(s) | 162 |
| CfoI | GCGC | 2 cut(s) | 123, 379 |
| Cfr13I | GGNCC | 2 cut(s) | 109, 286 |
| CsiI | ACCWGGT | 1 cut(s) | 288 |
| Csp6I | GTAC | 2 cut(s) | 6, 339 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 202, 237 |
| CviAII | CATG | 4 cut(s) | 37, 65, 113, 236 |
| CviJI | RGCY | 5 cut(s) | 28, 59, 89, 137, 178 |
| CviKI_1 | RGCY | 5 cut(s) | 28, 59, 89, 137, 178 |
| CviQI | GTAC | 2 cut(s) | 6, 339 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| DpnI | GATC | 4 cut(s) | 63, 101, 149, 209 |
| DpnII | GATC | 4 cut(s) | 61, 99, 147, 207 |
| Eco24I | GRGCYC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 2 cut(s) | 109, 286 |
| EcoO109I | RGGNCCY | 1 cut(s) | 286 |
| EcoRII | CCWGG | 1 cut(s) | 288 |
| EcoT38I | GRGCYC | 1 cut(s) | 139 |
| Esp3I | CGTCTC | 1 cut(s) | 363 |
| FaeI | CATG | 4 cut(s) | 40, 68, 116, 239 |
| FaiI | YATR | 5 cut(s) | 38, 66, 114, 192, 237 |
| FatI | CATG | 4 cut(s) | 36, 64, 112, 235 |
| FbaI | TGATCA | 1 cut(s) | 61 |
| Fnu4HI | GCNGC | 1 cut(s) | 380 |
| FriOI | GRGCYC | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 1 cut(s) | 380 |
| GlaI | GCGC | 2 cut(s) | 122, 378 |
| GluI | GCNGC | 1 cut(s) | 380 |
| GsuI | CTGGAG | 2 cut(s) | 200, 261 |
| HaeII | RGCGCY | 1 cut(s) | 380 |
| HapII | CCGG | 1 cut(s) | 25 |
| HhaI | GCGC | 2 cut(s) | 123, 379 |
| Hin1II | CATG | 4 cut(s) | 40, 68, 116, 239 |
| Hin6I | GCGC | 2 cut(s) | 121, 377 |
| HinP1I | GCGC | 2 cut(s) | 121, 377 |
| HinfI | GANTC | 2 cut(s) | 16, 129 |
| HpaII | CCGG | 1 cut(s) | 25 |
| HphI | GGTGA | 3 cut(s) | 13, 223, 277 |
| Hpy188I | TCNGA | 2 cut(s) | 96, 141 |
| Hpy188III | TCNNGA | 1 cut(s) | 362 |
| Hpy99I | CGWCG | 3 cut(s) | 304, 355, 358 |
| HpyAV | CCTTC | 2 cut(s) | 49, 262 |
| HpyCH4III | ACNGT | 3 cut(s) | 10, 343, 351 |
| HpyCH4V | TGCA | 4 cut(s) | 13, 76, 213, 382 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 10 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| Hsp92II | CATG | 4 cut(s) | 40, 68, 116, 239 |
| HspAI | GCGC | 2 cut(s) | 121, 377 |
| KpnI | GGTACC | 1 cut(s) | 342 |
| Ksp22I | TGATCA | 1 cut(s) | 61 |
| Kzo9I | GATC | 4 cut(s) | 61, 99, 147, 207 |
| LpnPI | CCDG | 8 cut(s) | 38, 118, 146, 164, 225, 275, 302, 372 |
| Lsp1109I | GCAGC | 1 cut(s) | 366 |
| MabI | ACCWGGT | 1 cut(s) | 288 |
| MaeIII | GTNAC | 1 cut(s) | 251 |
| MalI | GATC | 4 cut(s) | 63, 101, 149, 209 |
| MboI | GATC | 4 cut(s) | 61, 99, 147, 207 |
| MboII | GAAGA | 1 cut(s) | 220 |
| MflI | RGATCY | 2 cut(s) | 99, 207 |
| MhlI | GDGCHC | 2 cut(s) | 47, 139 |
| MlyI | GAGTC | 2 cut(s) | 10, 138 |
| MnlI | CCTC | 7 cut(s) | 79, 90, 135, 197, 236, 277, 367 |
| MslI | CAYNNNNRTG | 1 cut(s) | 50 |
| MspI | CCGG | 1 cut(s) | 25 |
| MspR9I | CCNGG | 2 cut(s) | 25, 290 |
| MvaI | CCWGG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 10 |
| NciI | CCSGG | 1 cut(s) | 25 |
| NdeII | GATC | 4 cut(s) | 61, 99, 147, 207 |
| NlaIII | CATG | 4 cut(s) | 40, 68, 116, 239 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 340, 348 |
| NmeAIII | GCCGAG | 1 cut(s) | 227 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| NspI | RCATGY | 1 cut(s) | 40 |
| OliI | CACNNNNGTG | 1 cut(s) | 50 |
| PciI | ACATGT | 1 cut(s) | 36 |
| PkrI | GCNGC | 1 cut(s) | 381 |
| PleI | GAGTC | 2 cut(s) | 10, 137 |
| PpsI | GAGTC | 2 cut(s) | 10, 137 |
| PpuMI | RGGWCCY | 1 cut(s) | 286 |
| PscI | ACATGT | 1 cut(s) | 36 |
| Psp5II | RGGWCCY | 1 cut(s) | 286 |
| Psp6I | CCWGG | 1 cut(s) | 288 |
| PspGI | CCWGG | 1 cut(s) | 288 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 340, 348 |
| PspPI | GGNCC | 2 cut(s) | 109, 286 |
| PspPPI | RGGWCCY | 1 cut(s) | 286 |
| PstI | CTGCAG | 1 cut(s) | 384 |
| PsuI | RGATCY | 2 cut(s) | 99, 207 |
| RsaI | GTAC | 2 cut(s) | 7, 340 |
| RsaNI | GTAC | 2 cut(s) | 6, 339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 50 |
| SatI | GCNGC | 1 cut(s) | 380 |
| Sau3AI | GATC | 4 cut(s) | 61, 99, 147, 207 |
| Sau96I | GGNCC | 2 cut(s) | 109, 286 |
| SchI | GAGTC | 2 cut(s) | 10, 138 |
| ScrFI | CCNGG | 2 cut(s) | 25, 290 |
| SduI | GDGCHC | 2 cut(s) | 47, 139 |
| SetI | ASST | 2 cut(s) | 180, 291 |
| SexAI | ACCWGGT | 1 cut(s) | 288 |
| SfcI | CTRYAG | 1 cut(s) | 380 |
| SinI | GGWCC | 2 cut(s) | 109, 286 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 50 |
| SsiI | CCGC | 1 cut(s) | 187 |
| StyD4I | CCNGG | 2 cut(s) | 23, 288 |
| TaaI | ACNGT | 3 cut(s) | 10, 343, 351 |
| TaqI | TCGA | 1 cut(s) | 302 |
| TaqII | GACCGA | 1 cut(s) | 270 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| TseI | GCWGC | 1 cut(s) | 379 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 1 cut(s) | 207 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| VpaK11BI | GGWCC | 2 cut(s) | 109, 286 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 340 |