FvH4_3g26421

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000123
Physical Location & Seq
Forward (+)
19475473 .. 19476698
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26421.t1

Sequence Viewer

Length: 915 bp
ATGACCGAGATAGAGACTAGGATCTCAACAGGGGACGCCGATCCCCATTTCTACATGTGCGGACGACTAATCAGAATGAACAAGCCGGTGGTGACTCCCATCCATTCCTCGGTTCTCTTCGGGGCATGGAATCTGAAGGAGAAGCTATTGGCTCGTGAAGAGGAATCAAGTCACTTTGTCTTTCAATTCAAGTCGAAGGCAGAGAGAGACCGAATCGCTAGTGGAAGACCGTGGTCTTTCAACGGTGGTATGCTTATCCTGGCGGAATACGACGGGCTTAGCCCGGTGGAGGATGGCTTGATCTATGGATTACCAGTGGTTGAGGCAGTTCACGCCGTCGATGGTGAGGTCGAGCTTTTGGCGAGCCAATCGAGGGAAGTTGGTGGTTTGGTGAAGGAGTCGGCTCTGCAGGTGGAGGAGGCTGCGCCGACGGGGTTGGAGGATGGACTGAGTGGCAGTGAGGAGGCGGCTGCGTTGGTTGTCTCTCCCCCGAATATCTCGGCAGGAAACCCTAGTTTCAAACTAGGGTTGATTGAGCCGATGGGGTTGACTGAGGATGTTGGGCCGGGTTGTGGGCCTCTAAAGGTTGGGCCGGGTGACTCTGGGCTGAAAAGGAAGTTTGGGTTTGGGACTGAAGCTGATGGGTTTGGGTTTTCTAGAGACGGGCCAGTTGGGAATGATTTGGTGCTGAAGAAGCCAAAGTCGAGCTTTCACTCTGGCGAGCTGGTAGAGGTTCCAGTGCGGTTTAGAAGTATTTCTCAGGAAAAGTCTCTCAAGAAGAGAGGTCGTCCACGTGGCAGTCGTAACAAGAAGAGGACAACAAATAGAGATCCGGAGCTATCAGATTCTATGGCTCCTAGTTCGGAAGGGGCCAATGCAGAAACAGGCCTCGAGTCCGAGGCTGGGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

305

Amino Acids

32.55

Weight (kDa)

5.22

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 38 - 90 5.5e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 400
Acc36I ACCTGC 1 cut(s) 400
AccIII TCCGGA 1 cut(s) 832
AciI CCGC 4 cut(s) 60, 263, 467, 742
AclWI GGATC 3 cut(s) 29, 35, 824
AcuI CTGAAG 3 cut(s) 155, 654, 710
AcvI CACGTG 1 cut(s) 794
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 5 cut(s) 109, 289, 373, 572, 903
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 4 cut(s) 185, 190, 241, 520
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 6 cut(s) 145, 355, 638, 708, 724, 838
AluI AGCT 6 cut(s) 145, 355, 638, 708, 724, 838
Alw26I GTCTC 5 cut(s) 8, 201, 487, 654, 774
AlwI GGATC 3 cut(s) 29, 35, 824
Ama87I CYCGRG 1 cut(s) 890
Aor13HI TCCGGA 1 cut(s) 832
AoxI GGCC 6 cut(s) 563, 575, 590, 665, 870, 886
ApeKI GCWGC 2 cut(s) 422, 470
Asp700I GAANNNNTTC 1 cut(s) 754
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 5 cut(s) 563, 575, 590, 665, 870
AsuC2I CCSGG 3 cut(s) 284, 567, 594
AsuHPI GGTGA 4 cut(s) 103, 356, 403, 608
AvaI CYCGRG 1 cut(s) 890
BauI CACGAG 1 cut(s) 153
BbrPI CACGTG 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 409, 457
BccI CCATC 6 cut(s) 107, 287, 335, 437, 535, 635
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 3 cut(s) 284, 567, 594
BcoDI GTCTC 5 cut(s) 8, 201, 487, 654, 774
BfaI CTAG 6 cut(s) 18, 219, 513, 524, 657, 858
BfmI CTRYAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 3 cut(s) 423, 468, 471
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 3 cut(s) 424, 469, 472
Bme1390I CCNGG 4 cut(s) 260, 284, 567, 594
BmeT110I CYCGRG 1 cut(s) 890
BmgT120I GGNCC 5 cut(s) 563, 575, 590, 665, 870
BmiI GGNNCC 3 cut(s) 735, 855, 871
BmrFI CCNGG 4 cut(s) 260, 284, 567, 594
BoxI GACNNNNGTC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 232
Bpu1102I GCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 3 cut(s) 284, 567, 594
BsaAI YACGTR 1 cut(s) 794
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 108, 230, 897
BsaWI WCCGGW 1 cut(s) 832
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 289, 373, 572, 903
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 314, 668, 737
BseAI TCCGGA 1 cut(s) 832
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 3 cut(s) 108, 230, 897
BseGI GGATG 4 cut(s) 99, 298, 448, 562
BseLI CCNNNNNNNGG 5 cut(s) 109, 289, 373, 572, 903
BseMII CTCAG 3 cut(s) 440, 543, 773
BseNI ACTGG 3 cut(s) 314, 668, 737
BseRI GAGGAG 2 cut(s) 431, 476
BseXI GCAGC 2 cut(s) 409, 457
BseYI CCCAGC 1 cut(s) 902
BshFI GGCC 6 cut(s) 565, 577, 592, 667, 872, 888
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 5 cut(s) 86, 284, 566, 593, 833
BslFI GGGAC 2 cut(s) 47, 643
BslI CCNNNNNNNGG 5 cut(s) 109, 289, 373, 572, 903
BsmAI GTCTC 5 cut(s) 8, 201, 487, 654, 774
BsmBI CGTCTC 1 cut(s) 654
BsmFI GGGAC 2 cut(s) 47, 643
BsnI GGCC 6 cut(s) 565, 577, 592, 667, 872, 888
Bso31I GGTCTC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 890
Bsp13I TCCGGA 1 cut(s) 832
Bsp143I GATC 4 cut(s) 21, 40, 300, 829
Bsp1720I GCTNAGC 1 cut(s) 278
BspACI CCGC 4 cut(s) 60, 263, 467, 742
BspANI GGCC 6 cut(s) 565, 577, 592, 667, 872, 888
BspCNI CTCAG 3 cut(s) 441, 544, 772
BspEI TCCGGA 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 735, 855, 871
BspMAI CTGCAG 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 3 cut(s) 29, 35, 824
BspTNI GGTCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 85
BsrI ACTGG 3 cut(s) 314, 668, 737
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 108, 230, 897
BssMI GATC 4 cut(s) 21, 40, 300, 829
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 231, 245
Bst6I CTCTTC 4 cut(s) 122, 153, 773, 806
BstACI GRCGYC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 364, 722
BstDEI CTNAG 4 cut(s) 278, 449, 552, 759
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 4 cut(s) 99, 298, 448, 562
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 4 cut(s) 24, 43, 303, 832
BstMAI GTCTC 5 cut(s) 8, 201, 487, 654, 774
BstMBI GATC 4 cut(s) 21, 40, 300, 829
BstMWI GCNNNNNNNGC 2 cut(s) 332, 694
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 58
BstPAI GACNNNNGTC 1 cut(s) 232
BstSCI CCNGG 4 cut(s) 258, 282, 565, 592
BstSFI CTRYAG 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 409, 457
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 21, 829
BstYI RGATCY 2 cut(s) 21, 829
BsuRI GGCC 6 cut(s) 565, 577, 592, 667, 872, 888
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 4 cut(s) 99, 298, 448, 562
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 3 cut(s) 321, 463, 744
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 364, 722
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 5 cut(s) 563, 575, 590, 665, 870
CseI GACGC 1 cut(s) 44
CviAII CATG 2 cut(s) 55, 126
DdeI CTNAG 4 cut(s) 278, 449, 552, 759
DpnI GATC 4 cut(s) 23, 42, 302, 831
DpnII GATC 4 cut(s) 21, 40, 300, 829
Eam1104I CTCTTC 4 cut(s) 122, 153, 773, 806
EarI CTCTTC 4 cut(s) 122, 153, 773, 806
EciI GGCGGA 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 201
Eco57I CTGAAG 3 cut(s) 155, 654, 710
Eco72I CACGTG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 654
FaeI CATG 2 cut(s) 58, 129
FaiI YATR 5 cut(s) 56, 127, 251, 306, 851
FalI AAGNNNNNCTT 2 cut(s) 692, 724
FaqI GGGAC 2 cut(s) 47, 643
FatI CATG 2 cut(s) 54, 125
Fnu4HI GCNGC 3 cut(s) 423, 468, 471
FokI GGATG 4 cut(s) 86, 305, 455, 569
Fsp4HI GCNGC 3 cut(s) 423, 468, 471
FspBI CTAG 6 cut(s) 18, 219, 513, 524, 657, 858
GlaI GCGC 1 cut(s) 426
GluI GCNGC 3 cut(s) 423, 468, 471
GsaI CCCAGC 1 cut(s) 906
HaeIII GGCC 6 cut(s) 565, 577, 592, 667, 872, 888
HapII CCGG 5 cut(s) 86, 284, 566, 593, 833
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 2 cut(s) 58, 129
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 8 cut(s) 94, 130, 164, 213, 398, 599, 845, 893
HpaII CCGG 5 cut(s) 86, 284, 566, 593, 833
HphI GGTGA 4 cut(s) 103, 356, 403, 608
Hpy166II GTNNAC 3 cut(s) 331, 549, 791
Hpy188I TCNGA 5 cut(s) 74, 135, 844, 865, 898
Hpy188III TCNNGA 5 cut(s) 155, 657, 761, 775, 833
Hpy8I GTNNAC 3 cut(s) 331, 549, 791
Hpy99I CGWCG 3 cut(s) 275, 341, 433
HpyAV CCTTC 4 cut(s) 130, 190, 388, 860
HpyCH4III ACNGT 2 cut(s) 231, 245
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 2 cut(s) 409, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 694
HpyF3I CTNAG 4 cut(s) 278, 449, 552, 759
HpySE526I ACGT 1 cut(s) 793
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 2 cut(s) 58, 129
HspAI GCGC 1 cut(s) 425
Kpn2I TCCGGA 1 cut(s) 832
Kzo9I GATC 4 cut(s) 21, 40, 300, 829
LmnI GCTCC 2 cut(s) 835, 859
Lsp1109I GCAGC 2 cut(s) 409, 457
MaeI CTAG 6 cut(s) 18, 219, 513, 524, 657, 858
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 4 cut(s) 91, 170, 596, 803
MalI GATC 4 cut(s) 23, 42, 302, 831
MboI GATC 4 cut(s) 21, 40, 300, 829
MboII GAAGA 6 cut(s) 109, 170, 237, 703, 790, 823
MflI RGATCY 2 cut(s) 21, 829
MluCI AATT 1 cut(s) 185
MlyI GAGTC 4 cut(s) 88, 407, 593, 902
MmeI TCCRAC 1 cut(s) 417
MroI TCCGGA 1 cut(s) 832
MroXI GAANNNNTTC 1 cut(s) 754
MspI CCGG 5 cut(s) 86, 284, 566, 593, 833
MspR9I CCNGG 4 cut(s) 260, 284, 567, 594
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 332, 694
NciI CCSGG 3 cut(s) 284, 567, 594
NdeII GATC 4 cut(s) 21, 40, 300, 829
NlaIII CATG 2 cut(s) 58, 129
NlaIV GGNNCC 3 cut(s) 735, 855, 871
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 3 cut(s) 91, 170, 596
NspI RCATGY 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 890
PaqCI CACCTGC 1 cut(s) 400
PceI AGGCCT 1 cut(s) 888
PciI ACATGT 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 799
PdmI GAANNNNTTC 1 cut(s) 754
PfeI GAWTC 4 cut(s) 130, 164, 213, 845
PkrI GCNGC 3 cut(s) 424, 469, 472
PleI GAGTC 4 cut(s) 88, 406, 593, 901
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 4 cut(s) 88, 406, 593, 901
Ppu21I YACGTR 1 cut(s) 794
PscI ACATGT 1 cut(s) 54
PshAI GACNNNNGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 735, 855, 871
PspPI GGNCC 5 cut(s) 563, 575, 590, 665, 870
PspXI VCTCGAGB 1 cut(s) 890
PstI CTGCAG 1 cut(s) 411
PsuI RGATCY 2 cut(s) 21, 829
SatI GCNGC 3 cut(s) 423, 468, 471
Sau3AI GATC 4 cut(s) 21, 40, 300, 829
Sau96I GGNCC 5 cut(s) 563, 575, 590, 665, 870
SchI GAGTC 4 cut(s) 88, 407, 593, 902
ScrFI CCNGG 4 cut(s) 260, 284, 567, 594
SfcI CTRYAG 1 cut(s) 407
Sfr274I CTCGAG 1 cut(s) 890
SlaI CTCGAG 1 cut(s) 890
SmlI CTYRAG 2 cut(s) 773, 890
SmoI CTYRAG 2 cut(s) 773, 890
Sse9I AATT 1 cut(s) 185
SseBI AGGCCT 1 cut(s) 888
SsiI CCGC 4 cut(s) 60, 263, 467, 742
SspMI CTAG 6 cut(s) 18, 219, 513, 524, 657, 858
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 4 cut(s) 258, 282, 565, 592
TaaI ACNGT 2 cut(s) 231, 245
TaiI ACGT 1 cut(s) 796
TaqI TCGA 6 cut(s) 194, 339, 351, 371, 704, 891
TaqII GACCGA 2 cut(s) 20, 225
TasI AATT 1 cut(s) 185
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 4 cut(s) 130, 164, 213, 845
TscAI CASTG 3 cut(s) 321, 463, 744
TseFI GTSAC 3 cut(s) 91, 170, 596
TseI GCWGC 2 cut(s) 422, 470
Tsp45I GTSAC 3 cut(s) 91, 170, 596
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 3 cut(s) 321, 463, 744
XbaI TCTAGA 1 cut(s) 656
XceI RCATGY 1 cut(s) 58
XhoI CTCGAG 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 754
XspI CTAG 6 cut(s) 18, 219, 513, 524, 657, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.