Rmu_sc0002285.1_g000020

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002285.1
OG0000123
Physical Location & Seq
Forward (+)
76165 .. 78045
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002285.1_g000020.1.cds

Sequence Viewer

Length: 1524 bp
atggctttaggaggtggtgaggaagcctttgaaccgggctgggggattttcgccacttccgggggcaggttcggtggttttcctgccgattctggtggtggtgcctccgattatggattcctggaactgagggcttcaaggtggtttgcggagggtttctctctagcggggaaattgatcgagcttcgaattgtgatggcggcggaggaggctatcgtgcacctagttgggggcgaggatgcaatccaagatccttttttctatgtatgtggccggttgctctcccaaaaacgggtgttgcttccgtcgttttcggcggctatttccggtatctggggtttgaaagagcgggttttgatccgtgaggaggaaggagggatctttgtctttcaattcaaggagcaggagacgaaggatcacgtcctcaacggcggtccttggttttttaacaattccatgcttctcttggcggactatgatggtctccgggatctgacagaggttccactgaattcaatggaggtttgggtggcggtgaaaggtctgcgcgtggctatgcgcaatgcccgtgccctaaccttacttgggaactccttggggcgctttgtcaggtacaaccaaggtgcgttgcagaggaaggatccagtgcaaaggctccgggttgtgcacgacgtacgtcgccgtgtatgggctcgacgtaagtactcgttttcggcagcgatggcggtggacttagagttgaggtacgagaaatgccatggtatctgtcggggctgcggcttctttgaccacgggctgggttgctgtgacaatgccttgacggcggtcatggagtcaggagacgggtcgggctacactcctccagcgttggcaacaacgttggtggctgttgatgtggccggaattgagtcgcccggccggtctgaggggctgctggacgttgggctgggtccggagggctggacggaggaagctagggcgactgggtcggtgacgtcgggatctgttgtggagccagcggctgccccgggattttcagcgggaaacctaggtttgaagttaggatttcctgttgggccgggtggcagcgggcctgaaggggaagttgggctgactttgggcctgagtggtaagtttgatgacctgatgaatgagagagtgggtgggccagctgcacatgggccagcttcacagggaccagctgtacatgggctagttgcaaatgggccaggaactgatgctgtttatcccaaaattttggggactcgcaaatggtgccatggtgagtggcatatggagaagcggcacaaaccaaccttggctgagataccccatgagtttcatcttggtgaacttgtggaggtcccagtgactgttgggaagactccaaagaagaagggtcggccaaggggtagttgtaaagaaaacaaaaggatcaacctgatgccgaggttgttggatgctgaaaagcctgatgcaggtactagctccgacccccagaggacggagaaggtacatgtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

507

Amino Acids

54.38

Weight (kDa)

6.52

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 998
Acc16I TGCGCA 1 cut(s) 560
Acc36I ACCTGC 2 cut(s) 57, 1469
AccB1I GGYRCC 2 cut(s) 101, 1275
AccB7I CCANNNNNTGG 1 cut(s) 796
AccBSI CCGCTC 1 cut(s) 349
AccII CGCG 1 cut(s) 549
AccIII TCCGGA 1 cut(s) 952
AclI AACGTT 1 cut(s) 878
AclWI GGATC 9 cut(s) 245, 352, 386, 423, 498, 635, 648, 1009, 1442
AcoI YGGCCR 4 cut(s) 271, 897, 916, 1403
AcsI RAATTY 2 cut(s) 511, 1254
AcuI CTGAAG 1 cut(s) 1116
AcyI GRCGYC 1 cut(s) 995
AfaI GTAC 7 cut(s) 614, 675, 704, 746, 1206, 1483, 1515
AflIII ACRYGT 1 cut(s) 1516
AgsI TTSAA 7 cut(s) 32, 138, 343, 392, 397, 516, 1057
AjiI CACGTC 1 cut(s) 421
AjnI CCWGG 2 cut(s) 120, 1228
AjuI GAANNNNNNNTTGG 2 cut(s) 1089, 1121
AluBI AGCT 6 cut(s) 184, 974, 1172, 1187, 1202, 1488
AluI AGCT 6 cut(s) 184, 974, 1172, 1187, 1202, 1488
Alw21I GWGCWC 2 cut(s) 222, 669
Alw26I GTCTC 3 cut(s) 401, 488, 834
Alw44I GTGCAC 2 cut(s) 218, 665
AlwI GGATC 9 cut(s) 245, 352, 386, 423, 498, 635, 648, 1009, 1442
AlwNI CAGNNNCTG 3 cut(s) 1022, 1235, 1373
Ama87I CYCGRG 1 cut(s) 1027
Aor13HI TCCGGA 1 cut(s) 952
ApaLI GTGCAC 2 cut(s) 218, 665
ApeKI GCWGC 6 cut(s) 716, 774, 931, 1022, 1086, 1172
ApoI RAATTY 2 cut(s) 511, 1254
AspA2I CCTAGG 1 cut(s) 1048
AspLEI GCGC 3 cut(s) 549, 561, 603
AsuC2I CCSGG 8 cut(s) 36, 61, 488, 659, 915, 1028, 1029, 1080
AsuHPI GGTGA 5 cut(s) 29, 547, 1003, 1295, 1361
AsuII TTCGAA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 1027
AvaII GGWCC 4 cut(s) 434, 950, 1196, 1363
AvrII CCTAGG 1 cut(s) 1048
BaeGI GKGCMC 3 cut(s) 222, 574, 669
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 2 cut(s) 101, 1275
BanII GRGCYC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 1388
Bbv12I GWGCWC 2 cut(s) 222, 669
BbvI GCAGC 6 cut(s) 728, 761, 918, 1009, 1098, 1159
BccI CCATC 3 cut(s) 190, 473, 715
BceAI ACGGC 3 cut(s) 445, 666, 837
BciT130I CCWGG 2 cut(s) 122, 1230
BcnI CCSGG 8 cut(s) 36, 61, 488, 659, 915, 1028, 1029, 1080
BcoDI GTCTC 3 cut(s) 401, 488, 834
BfaI CTAG 7 cut(s) 164, 224, 975, 1049, 1214, 1485, 1522
BfoI RGCGCY 1 cut(s) 604
BfuAI ACCTGC 2 cut(s) 57, 1469
BglI GCCNNNNNGGC 1 cut(s) 821
BlnI CCTAGG 1 cut(s) 1048
BmcAI AGTACT 1 cut(s) 704
Bme18I GGWCC 4 cut(s) 434, 950, 1196, 1363
BmeT110I CYCGRG 1 cut(s) 1027
BmgBI CACGTC 1 cut(s) 421
BmiI GGNNCC 9 cut(s) 103, 504, 642, 656, 951, 1014, 1197, 1277, 1365
BmrI ACTGGG 2 cut(s) 993, 1361
BmsI GCATC 5 cut(s) 229, 1228, 1434, 1450, 1465
BmuI ACTGGG 2 cut(s) 993, 1361
BoxI GACNNNNGTC 2 cut(s) 675, 824
BpiI GAAGAC 1 cut(s) 1388
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 1 cut(s) 846
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 8 cut(s) 36, 61, 488, 659, 915, 1028, 1029, 1080
BsaHI GRCGYC 1 cut(s) 995
BsaI GGTCTC 1 cut(s) 488
BsaWI WCCGGW 2 cut(s) 326, 952
Bse118I RCCGGY 2 cut(s) 273, 918
Bse1I ACTGG 3 cut(s) 644, 988, 1367
Bse3DI GCAATG 1 cut(s) 568
BseAI TCCGGA 1 cut(s) 952
BseBI CCWGG 2 cut(s) 122, 1230
BseGI GGATG 2 cut(s) 244, 1465
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 4 cut(s) 119, 915, 1115, 1314
BseNI ACTGG 3 cut(s) 644, 988, 1367
BseRI GAGGAG 3 cut(s) 221, 380, 849
BseSI GKGCMC 3 cut(s) 222, 574, 669
BseX3I CGGCCG 1 cut(s) 916
BseXI GCAGC 6 cut(s) 728, 761, 918, 1009, 1098, 1159
BseYI CCCAGC 3 cut(s) 39, 796, 946
BsgI GTGCAG 1 cut(s) 1158
Bsh1236I CGCG 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 919
BshNI GGYRCC 2 cut(s) 101, 1275
BsiEI CGRYCG 1 cut(s) 919
BsiHKAI GWGCWC 2 cut(s) 222, 669
BsiHKCI CYCGRG 1 cut(s) 1027
BsiWI CGTACG 1 cut(s) 673
BslFI GGGAC 3 cut(s) 1209, 1276, 1349
BsmAI GTCTC 3 cut(s) 401, 488, 834
BsmBI CGTCTC 2 cut(s) 401, 834
BsmFI GGGAC 3 cut(s) 1209, 1276, 1349
Bso31I GGTCTC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 1027
Bsp119I TTCGAA 1 cut(s) 187
Bsp1286I GDGCHC 4 cut(s) 222, 574, 669, 694
Bsp13I TCCGGA 1 cut(s) 952
Bsp1407I TGTACA 1 cut(s) 1204
Bsp143I GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
Bsp19I CCATGG 2 cut(s) 757, 1279
BspCNI CTCAG 4 cut(s) 120, 916, 1116, 1315
BspEI TCCGGA 1 cut(s) 952
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 9 cut(s) 103, 504, 642, 656, 951, 1014, 1197, 1277, 1365
BspMI ACCTGC 2 cut(s) 57, 1469
BspPI GGATC 9 cut(s) 245, 352, 386, 423, 498, 635, 648, 1009, 1442
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 101, 1275
BspTNI GGTCTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 2 cut(s) 273, 918
BsrGI TGTACA 1 cut(s) 1204
BsrI ACTGG 3 cut(s) 644, 988, 1367
BssAI RCCGGY 2 cut(s) 273, 918
BssMI GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
BssNI GRCGYC 1 cut(s) 995
BssT1I CCWWGG 8 cut(s) 437, 594, 619, 757, 1048, 1279, 1317, 1406
Bst2UI CCWGG 2 cut(s) 122, 1230
Bst4CI ACNGT 1 cut(s) 1375
BstACI GRCGYC 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 1275
BstAUI TGTACA 1 cut(s) 1204
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 4 cut(s) 1017, 1091, 1170, 1185
BstDEI CTNAG 5 cut(s) 128, 733, 924, 1124, 1323
BstDSI CCRYGG 3 cut(s) 757, 790, 1279
BstENI CCTNNNNNAGG 1 cut(s) 1476
BstF5I GGATG 2 cut(s) 244, 1465
BstFNI CGCG 1 cut(s) 549
BstH2I RGCGCY 1 cut(s) 604
BstHHI GCGC 3 cut(s) 549, 561, 603
BstKTI GATC 9 cut(s) 180, 253, 360, 381, 418, 493, 643, 1004, 1437
BstMAI GTCTC 3 cut(s) 401, 488, 834
BstMBI GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
BstMCI CGRYCG 1 cut(s) 919
BstMWI GCNNNNNNNGC 4 cut(s) 209, 722, 821, 1275
BstNI CCWGG 2 cut(s) 122, 1230
BstNSI RCATGY 1 cut(s) 1520
BstPAI GACNNNNGTC 2 cut(s) 675, 824
BstSLI GKGCMC 3 cut(s) 222, 574, 669
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 6 cut(s) 728, 761, 918, 1009, 1098, 1159
BstV2I GAAGAC 1 cut(s) 1388
BstX2I RGATCY 5 cut(s) 250, 378, 490, 640, 1001
BstXI CCANNNNNNTGG 1 cut(s) 1258
BstYI RGATCY 5 cut(s) 250, 378, 490, 640, 1001
BstZI CGGCCG 1 cut(s) 916
BtgI CCRYGG 3 cut(s) 757, 790, 1279
BtgZI GCGATG 1 cut(s) 734
BtrI CACGTC 1 cut(s) 421
BtsCI GGATG 2 cut(s) 244, 1465
BtsIMutI CAGTG 3 cut(s) 506, 651, 1374
BveI ACCTGC 2 cut(s) 57, 1469
Cac8I GCNNGC 4 cut(s) 1017, 1091, 1170, 1185
CaiI CAGNNNCTG 3 cut(s) 1022, 1235, 1373
CfoI GCGC 3 cut(s) 549, 561, 603
Cfr10I RCCGGY 2 cut(s) 273, 918
Cfr9I CCCGGG 1 cut(s) 1027
Csp6I GTAC 7 cut(s) 613, 674, 703, 745, 1205, 1482, 1514
CspCI CAANNNNNGTGG 2 cut(s) 864, 899
CviAII CATG 8 cut(s) 457, 758, 829, 1178, 1208, 1280, 1334, 1517
CviQI GTAC 7 cut(s) 613, 674, 703, 745, 1205, 1482, 1514
DdeI CTNAG 5 cut(s) 128, 733, 924, 1124, 1323
DpnI GATC 9 cut(s) 179, 252, 359, 380, 417, 492, 642, 1003, 1436
DpnII GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
EaeI YGGCCR 4 cut(s) 271, 897, 916, 1403
EagI CGGCCG 1 cut(s) 916
EciI GGCGGA 2 cut(s) 218, 485
EclXI CGGCCG 1 cut(s) 916
Eco130I CCWWGG 8 cut(s) 437, 594, 619, 757, 1048, 1279, 1317, 1406
Eco24I GRGCYC 1 cut(s) 694
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 4 cut(s) 434, 950, 1196, 1363
Eco52I CGGCCG 1 cut(s) 916
Eco57I CTGAAG 1 cut(s) 1116
Eco88I CYCGRG 1 cut(s) 1027
EcoNI CCTNNNNNAGG 1 cut(s) 1476
EcoO109I RGGNCCY 1 cut(s) 1363
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 120, 1228
EcoT14I CCWWGG 8 cut(s) 437, 594, 619, 757, 1048, 1279, 1317, 1406
EcoT38I GRGCYC 1 cut(s) 694
ErhI CCWWGG 8 cut(s) 437, 594, 619, 757, 1048, 1279, 1317, 1406
Esp3I CGTCTC 2 cut(s) 401, 834
FaeI CATG 8 cut(s) 460, 761, 832, 1181, 1211, 1283, 1337, 1520
FaqI GGGAC 3 cut(s) 1209, 1276, 1349
FatI CATG 8 cut(s) 456, 757, 828, 1177, 1207, 1279, 1333, 1516
FauI CCCGC 4 cut(s) 160, 342, 1033, 1082
FauNDI CATATG 1 cut(s) 1293
FokI GGATG 2 cut(s) 251, 1472
FriOI GRGCYC 1 cut(s) 694
FspBI CTAG 7 cut(s) 164, 224, 975, 1049, 1214, 1485, 1522
FspI TGCGCA 1 cut(s) 560
GlaI GCGC 3 cut(s) 548, 560, 602
GsaI CCCAGC 3 cut(s) 43, 800, 950
GsuI CTGGAG 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 604
HhaI GCGC 3 cut(s) 549, 561, 603
Hin1I GRCGYC 1 cut(s) 995
Hin1II CATG 8 cut(s) 460, 761, 832, 1181, 1211, 1283, 1337, 1520
Hin6I GCGC 3 cut(s) 547, 559, 601
HinP1I GCGC 3 cut(s) 547, 559, 601
HinfI GANTC 6 cut(s) 89, 117, 833, 908, 1264, 1384
HphI GGTGA 5 cut(s) 29, 547, 1003, 1295, 1361
Hpy166II GTNNAC 4 cut(s) 220, 667, 730, 1352
Hpy188I TCNGA 4 cut(s) 109, 495, 925, 1492
Hpy188III TCNNGA 3 cut(s) 837, 953, 999
Hpy8I GTNNAC 4 cut(s) 220, 667, 730, 1352
Hpy99I CGWCG 5 cut(s) 310, 674, 681, 699, 1000
HpyAV CCTTC 6 cut(s) 365, 406, 631, 1091, 1390, 1504
HpyCH4III ACNGT 1 cut(s) 1375
HpyCH4IV ACGT 7 cut(s) 420, 672, 676, 697, 878, 939, 995
HpyCH4V TGCA 8 cut(s) 220, 242, 631, 649, 667, 1175, 1220, 1478
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 722, 821, 1275
HpyF3I CTNAG 5 cut(s) 128, 733, 924, 1124, 1323
HpySE526I ACGT 7 cut(s) 420, 672, 676, 697, 878, 939, 995
Hsp92I GRCGYC 1 cut(s) 995
Hsp92II CATG 8 cut(s) 460, 761, 832, 1181, 1211, 1283, 1337, 1520
HspAI GCGC 3 cut(s) 547, 559, 601
Kpn2I TCCGGA 1 cut(s) 952
Kzo9I GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
LmnI GCTCC 4 cut(s) 400, 660, 1012, 1493
Lsp1109I GCAGC 6 cut(s) 728, 761, 918, 1009, 1098, 1159
LweI GCATC 5 cut(s) 229, 1228, 1434, 1450, 1465
MaeI CTAG 7 cut(s) 164, 224, 975, 1049, 1214, 1485, 1522
MaeII ACGT 7 cut(s) 420, 672, 676, 697, 878, 939, 995
MaeIII GTNAC 3 cut(s) 806, 991, 1369
MalI GATC 9 cut(s) 179, 252, 359, 380, 417, 492, 642, 1003, 1436
MbiI CCGCTC 1 cut(s) 349
MboI GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
MboII GAAGA 2 cut(s) 1393, 1405
MflI RGATCY 5 cut(s) 250, 378, 490, 640, 1001
MhlI GDGCHC 4 cut(s) 222, 574, 669, 694
MluCI AATT 7 cut(s) 173, 189, 392, 451, 511, 903, 1254
MlyI GAGTC 4 cut(s) 842, 917, 1258, 1378
MmeI TCCRAC 2 cut(s) 1437, 1515
MroI TCCGGA 1 cut(s) 952
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 1347
MspA1I CMGCKG 5 cut(s) 1019, 1040, 1089, 1172, 1202
MvaI CCWGG 2 cut(s) 122, 1230
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 4 cut(s) 209, 722, 821, 1275
NciI CCSGG 8 cut(s) 36, 61, 488, 659, 915, 1028, 1029, 1080
NcoI CCATGG 2 cut(s) 757, 1279
NdeI CATATG 1 cut(s) 1293
NdeII GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
NlaIII CATG 8 cut(s) 460, 761, 832, 1181, 1211, 1283, 1337, 1520
NlaIV GGNNCC 9 cut(s) 103, 504, 642, 656, 951, 1014, 1197, 1277, 1365
NmeAIII GCCGAG 1 cut(s) 1473
NmuCI GTSAC 3 cut(s) 806, 991, 1369
NsbI TGCGCA 1 cut(s) 560
NspI RCATGY 1 cut(s) 1520
NspV TTCGAA 1 cut(s) 187
PciI ACATGT 1 cut(s) 1516
PfeI GAWTC 2 cut(s) 89, 117
Pfl23II CGTACG 1 cut(s) 673
PflFI GACNNNGTC 1 cut(s) 985
PflMI CCANNNNNTGG 1 cut(s) 796
PfoI TCCNGGA 2 cut(s) 120, 486
PleI GAGTC 4 cut(s) 841, 916, 1258, 1378
PpsI GAGTC 4 cut(s) 841, 916, 1258, 1378
PpuMI RGGWCCY 1 cut(s) 1363
PscI ACATGT 1 cut(s) 1516
PshAI GACNNNNGTC 2 cut(s) 675, 824
Psp1406I AACGTT 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 1363
Psp6I CCWGG 2 cut(s) 120, 1228
PspFI CCCAGC 3 cut(s) 39, 796, 946
PspGI CCWGG 2 cut(s) 120, 1228
PspLI CGTACG 1 cut(s) 673
PspN4I GGNNCC 9 cut(s) 103, 504, 642, 656, 951, 1014, 1197, 1277, 1365
PspPPI RGGWCCY 1 cut(s) 1363
PstNI CAGNNNCTG 3 cut(s) 1022, 1235, 1373
PsuI RGATCY 5 cut(s) 250, 378, 490, 640, 1001
PsyI GACNNNGTC 1 cut(s) 985
PvuII CAGCTG 2 cut(s) 1172, 1202
RsaI GTAC 7 cut(s) 614, 675, 704, 746, 1206, 1483, 1515
RsaNI GTAC 7 cut(s) 613, 674, 703, 745, 1205, 1482, 1514
RseI CAYNNNNRTG 1 cut(s) 1347
SaqAI TTAA 1 cut(s) 447
Sau3AI GATC 9 cut(s) 177, 250, 357, 378, 415, 490, 640, 1001, 1434
ScaI AGTACT 1 cut(s) 704
SchI GAGTC 4 cut(s) 842, 917, 1258, 1378
SduI GDGCHC 4 cut(s) 222, 574, 669, 694
SfaNI GCATC 5 cut(s) 229, 1228, 1434, 1450, 1465
SfuI TTCGAA 1 cut(s) 187
SinI GGWCC 4 cut(s) 434, 950, 1196, 1363
SmaI CCCGGG 1 cut(s) 1029
SmiMI CAYNNNNRTG 1 cut(s) 1347
Sse9I AATT 7 cut(s) 173, 189, 392, 451, 511, 903, 1254
SspMI CTAG 7 cut(s) 164, 224, 975, 1049, 1214, 1485, 1522
StyI CCWWGG 8 cut(s) 437, 594, 619, 757, 1048, 1279, 1317, 1406
TaaI ACNGT 1 cut(s) 1375
TaiI ACGT 7 cut(s) 423, 675, 679, 700, 881, 942, 998
TaqI TCGA 3 cut(s) 180, 187, 694
TasI AATT 7 cut(s) 173, 189, 392, 451, 511, 903, 1254
TatI WGTACW 2 cut(s) 702, 1204
TauI GCSGC 5 cut(s) 203, 320, 780, 1022, 1306
TfiI GAWTC 2 cut(s) 89, 117
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TscAI CASTG 3 cut(s) 513, 651, 1374
TseFI GTSAC 3 cut(s) 806, 991, 1369
TseI GCWGC 6 cut(s) 716, 774, 931, 1022, 1086, 1172
Tsp45I GTSAC 3 cut(s) 806, 991, 1369
TspDTI ATGAA 2 cut(s) 1163, 1331
TspGWI ACGGA 4 cut(s) 294, 350, 980, 1520
TspMI CCCGGG 1 cut(s) 1027
TspRI CASTG 3 cut(s) 513, 651, 1374
Tth111I GACNNNGTC 1 cut(s) 985
Van91I CCANNNNNTGG 1 cut(s) 796
VneI GTGCAC 2 cut(s) 218, 665
VpaK11BI GGWCC 4 cut(s) 434, 950, 1196, 1363
XagI CCTNNNNNAGG 1 cut(s) 1476
XapI RAATTY 2 cut(s) 511, 1254
XceI RCATGY 1 cut(s) 1520
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmaI CCCGGG 1 cut(s) 1027
XmaJI CCTAGG 1 cut(s) 1048
XspI CTAG 7 cut(s) 164, 224, 975, 1049, 1214, 1485, 1522
ZraI GACGTC 1 cut(s) 996
ZrmI AGTACT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.