FvH4_4g13902

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000123
Physical Location & Seq
Forward (+)
17423169 .. 17424119
951 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13902.t1

Sequence Viewer

Length: 951 bp
ATGCTTATCCTGGCGGAGTACGACGGACTTAGCCCGATGGAGGATGTCTCTCTACATTATTTGGAGGTGTGGGTCTCGGTCACCGAACTCCGTTTTGCTATGAGGAACAACATGGTTCTTAGCCATGCTGTGAATGGGTTGGGAGTTTTTGTGAGAGCGGATCTGGGTCCGATTCAGAGGAAGGAGAAGATCCAACGAGTTAGGGTTGTGTTGGACGTTCGAAACCGGATTCCGGCCAAACGCATTTTTGACTACTCACCGGAGGTAGCTGTCAAGCTGGAGTTCAAAGTTGAAAGAGCTCATGGGATCTGCAAGGATTGTGGATACTTTGGGCATGGAGGAGGTACTTGCGATAAGGGCTCTATTTGTGGGTTACCGATGGTTAATGTGGTTAGCGTCGTCGACTGCGAAGCGGAGCTTTTGGCGAGCCGGTCAATGGATGGTTTGTTGAAGGAGCCGGTTCTACAGGTGGATGAGGCTGCGCCGACGGGGTTGGAGGTTGGTATGAGTGGCAACGAGGAGGCGGTTGCGCTGGTTGTTACTCCCCCGACTTTTTCGGCGGGAAACCCTAGTTTCAAACTAGGGTTGACTAACGGTATTGGGCTGGGAGGGTTTCGTGGGCCTCTGAGGATTGGGCCAGGCGATTCTGGGTTCAAAAGAAAGTTTGGGTTTGGGTCTGAATCTGATGGGTTTGGGCTTTCTGGAGATGGTCCAGCTGGGACTGATTTGATGTTGAAGAAGCCAAAGTCAAGCTTCTCTGGTGAGCTCGTAGAGGTTCCAGTCCAGTTTGGAAGGATTCCTCAGAAAAAGTCTCCTAAGAAGAGAGGCCGCCCTCGTGGCAGTCGTAACAAGAAGAGGACAATGAATGGAGATCCGGAGTTTTCTATGGCTCCTAGTTTGGAGGGCGCCAATGTAGAAACAGGCCTCGAATCCGAGGCTGAGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

317

Amino Acids

34.0

Weight (kDa)

6.49

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 905
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 402
AccIII TCCGGA 1 cut(s) 874
AciI CCGC 6 cut(s) 14, 158, 413, 524, 560, 829
AclWI GGATC 4 cut(s) 168, 184, 314, 866
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 2 cut(s) 20, 346
AfiI CCNNNNNNNGG 3 cut(s) 40, 232, 436
AgsI TTSAA 6 cut(s) 286, 293, 451, 577, 655, 736
AjnI CCWGG 2 cut(s) 9, 637
AluBI AGCT 7 cut(s) 269, 277, 299, 418, 716, 753, 766
AluI AGCT 7 cut(s) 269, 277, 299, 418, 716, 753, 766
Alw21I GWGCWC 2 cut(s) 301, 768
Alw26I GTCTC 3 cut(s) 52, 79, 816
AlwI GGATC 4 cut(s) 168, 184, 314, 866
Aor13HI TCCGGA 1 cut(s) 874
AoxI GGCC 5 cut(s) 234, 620, 635, 826, 922
ApeKI GCWGC 1 cut(s) 479
AspLEI GCGC 3 cut(s) 484, 532, 908
AspS9I GGNCC 4 cut(s) 167, 620, 635, 710
AsuHPI GGTGA 3 cut(s) 73, 249, 773
AsuII TTCGAA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 167, 710
BanI GGYRCC 1 cut(s) 905
BanII GRGCYC 3 cut(s) 301, 362, 768
BauI CACGAG 1 cut(s) 834
Bbv12I GWGCWC 2 cut(s) 301, 768
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 1 cut(s) 466
BccI CCATC 5 cut(s) 31, 373, 434, 680, 701
BciT130I CCWGG 2 cut(s) 11, 639
BciVI GTATCC 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 52, 79, 816
BfaI CTAG 3 cut(s) 570, 581, 894
BfmI CTRYAG 1 cut(s) 464
BfoI RGCGCY 1 cut(s) 909
BfuI GTATCC 1 cut(s) 317
BglI GCCNNNNNGGC 1 cut(s) 837
BisI GCNGC 2 cut(s) 480, 829
BlsI GCNGC 2 cut(s) 481, 830
Bme1390I CCNGG 2 cut(s) 11, 639
Bme18I GGWCC 2 cut(s) 167, 710
BmgT120I GGNCC 4 cut(s) 167, 620, 635, 710
BmiI GGNNCC 5 cut(s) 168, 456, 777, 891, 907
BmrFI CCNGG 2 cut(s) 11, 639
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 2 cut(s) 299, 723
Bpu10I CCTNAGC 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 906
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 933
BsaWI WCCGGW 3 cut(s) 225, 259, 874
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 232, 436
Bse118I RCCGGY 2 cut(s) 429, 457
Bse1I ACTGG 2 cut(s) 779, 784
BseAI TCCGGA 1 cut(s) 874
BseBI CCWGG 2 cut(s) 11, 639
BseDI CCNNGG 1 cut(s) 933
BseGI GGATG 3 cut(s) 49, 445, 478
BseLI CCNNNNNNNGG 3 cut(s) 40, 232, 436
BseMII CTCAG 3 cut(s) 617, 815, 930
BseNI ACTGG 2 cut(s) 779, 784
BseRI GAGGAG 2 cut(s) 354, 533
BseXI GCAGC 1 cut(s) 466
BseYI CCCAGC 2 cut(s) 604, 716
BshFI GGCC 5 cut(s) 236, 622, 637, 828, 924
BshNI GGYRCC 1 cut(s) 905
BsiHKAI GWGCWC 2 cut(s) 301, 768
BsiSI CCGG 6 cut(s) 226, 233, 260, 430, 458, 875
BslFI GGGAC 1 cut(s) 733
BslI CCNNNNNNNGG 3 cut(s) 40, 232, 436
BsmAI GTCTC 3 cut(s) 52, 79, 816
BsmFI GGGAC 1 cut(s) 733
BsnI GGCC 5 cut(s) 236, 622, 637, 828, 924
Bso31I GGTCTC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 301, 362, 768
Bsp13I TCCGGA 1 cut(s) 874
Bsp143I GATC 4 cut(s) 160, 189, 306, 871
BspACI CCGC 6 cut(s) 14, 158, 413, 524, 560, 829
BspANI GGCC 5 cut(s) 236, 622, 637, 828, 924
BspCNI CTCAG 3 cut(s) 618, 814, 931
BspEI TCCGGA 1 cut(s) 874
BspLI GGNNCC 5 cut(s) 168, 456, 777, 891, 907
BspPI GGATC 4 cut(s) 168, 184, 314, 866
BspT104I TTCGAA 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 158
BsrFI RCCGGY 2 cut(s) 429, 457
BsrI ACTGG 2 cut(s) 779, 784
BssAI RCCGGY 2 cut(s) 429, 457
BssECI CCNNGG 1 cut(s) 933
BssMI GATC 4 cut(s) 160, 189, 306, 871
BssNI GRCGYC 1 cut(s) 906
BssSI CACGAG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 11, 639
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 2 cut(s) 815, 848
BstACI GRCGYC 1 cut(s) 906
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 6 cut(s) 29, 119, 626, 801, 816, 939
BstEII GGTNACC 2 cut(s) 79, 372
BstF5I GGATG 3 cut(s) 49, 445, 478
BstH2I RGCGCY 1 cut(s) 909
BstHHI GCGC 3 cut(s) 484, 532, 908
BstKTI GATC 4 cut(s) 163, 192, 309, 874
BstMAI GTCTC 3 cut(s) 52, 79, 816
BstMBI GATC 4 cut(s) 160, 189, 306, 871
BstMWI GCNNNNNNNGC 2 cut(s) 357, 837
BstNI CCWGG 2 cut(s) 11, 639
BstPI GGTNACC 2 cut(s) 79, 372
BstSCI CCNGG 2 cut(s) 9, 637
BstSFI CTRYAG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 466
BstX2I RGATCY 4 cut(s) 160, 189, 306, 871
BstYI RGATCY 4 cut(s) 160, 189, 306, 871
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 5 cut(s) 236, 622, 637, 828, 924
BtsCI GGATG 3 cut(s) 49, 445, 478
Cac8I GCNNGC 1 cut(s) 427
CfoI GCGC 3 cut(s) 484, 532, 908
Cfr10I RCCGGY 2 cut(s) 429, 457
Cfr13I GGNCC 4 cut(s) 167, 620, 635, 710
CseI GACGC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 19, 345
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 4 cut(s) 112, 125, 302, 335
CviQI GTAC 2 cut(s) 19, 345
DdeI CTNAG 6 cut(s) 29, 119, 626, 801, 816, 939
DinI GGCGCC 1 cut(s) 907
DpnI GATC 4 cut(s) 162, 191, 308, 873
DpnII GATC 4 cut(s) 160, 189, 306, 871
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 815, 848
EarI CTCTTC 2 cut(s) 815, 848
EciI GGCGGA 1 cut(s) 29
Ecl136II GAGCTC 2 cut(s) 299, 766
Eco147I AGGCCT 1 cut(s) 924
Eco24I GRGCYC 3 cut(s) 301, 362, 768
Eco31I GGTCTC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 167, 710
Eco53kI GAGCTC 2 cut(s) 299, 766
Eco91I GGTNACC 2 cut(s) 79, 372
EcoICRI GAGCTC 2 cut(s) 299, 766
EcoO65I GGTNACC 2 cut(s) 79, 372
EcoRII CCWGG 2 cut(s) 9, 637
EcoT38I GRGCYC 3 cut(s) 301, 362, 768
EgeI GGCGCC 1 cut(s) 907
EheI GGCGCC 1 cut(s) 907
FaeI CATG 4 cut(s) 115, 128, 305, 338
FaiI YATR 7 cut(s) 101, 113, 126, 303, 336, 506, 887
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 737, 769
FaqI GGGAC 1 cut(s) 733
FatI CATG 4 cut(s) 111, 124, 301, 334
FauI CCCGC 1 cut(s) 553
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 480, 829
FokI GGATG 3 cut(s) 56, 452, 485
FriOI GRGCYC 3 cut(s) 301, 362, 768
Fsp4HI GCNGC 2 cut(s) 480, 829
FspBI CTAG 3 cut(s) 570, 581, 894
GlaI GCGC 3 cut(s) 483, 531, 907
GluI GCNGC 2 cut(s) 480, 829
GsaI CCCAGC 2 cut(s) 608, 720
GsuI CTGGAG 2 cut(s) 299, 723
HaeII RGCGCY 1 cut(s) 909
HaeIII GGCC 5 cut(s) 236, 622, 637, 828, 924
HapII CCGG 6 cut(s) 226, 233, 260, 430, 458, 875
HgaI GACGC 1 cut(s) 385
HhaI GCGC 3 cut(s) 484, 532, 908
Hin1I GRCGYC 1 cut(s) 906
Hin1II CATG 4 cut(s) 115, 128, 305, 338
Hin6I GCGC 3 cut(s) 482, 530, 906
HinP1I GCGC 3 cut(s) 482, 530, 906
HincII GTYRAC 2 cut(s) 403, 588
HindII GTYRAC 2 cut(s) 403, 588
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 6 cut(s) 172, 229, 644, 680, 796, 929
HpaII CCGG 6 cut(s) 226, 233, 260, 430, 458, 875
HphI GGTGA 3 cut(s) 73, 249, 773
Hpy166II GTNNAC 2 cut(s) 403, 588
Hpy188I TCNGA 7 cut(s) 171, 177, 627, 679, 685, 804, 934
Hpy188III TCNNGA 2 cut(s) 702, 875
Hpy8I GTNNAC 2 cut(s) 403, 588
Hpy99I CGWCG 4 cut(s) 26, 401, 404, 490
HpyAV CCTTC 3 cut(s) 175, 445, 786
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 837
HpyF3I CTNAG 6 cut(s) 29, 119, 626, 801, 816, 939
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 906
Hsp92II CATG 4 cut(s) 115, 128, 305, 338
HspAI GCGC 3 cut(s) 482, 530, 906
KasI GGCGCC 1 cut(s) 905
Kpn2I TCCGGA 1 cut(s) 874
Kzo9I GATC 4 cut(s) 160, 189, 306, 871
LmnI GCTCC 3 cut(s) 415, 454, 895
Lsp1109I GCAGC 1 cut(s) 466
MaeI CTAG 3 cut(s) 570, 581, 894
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 4 cut(s) 79, 372, 538, 845
MalI GATC 4 cut(s) 162, 191, 308, 873
MbiI CCGCTC 1 cut(s) 158
MboI GATC 4 cut(s) 160, 189, 306, 871
MboII GAAGA 4 cut(s) 199, 748, 832, 865
MflI RGATCY 4 cut(s) 160, 189, 306, 871
MhlI GDGCHC 3 cut(s) 301, 362, 768
Mly113I GGCGCC 1 cut(s) 906
MmeI TCCRAC 3 cut(s) 192, 217, 474
MroI TCCGGA 1 cut(s) 874
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 6 cut(s) 226, 233, 260, 430, 458, 875
MspR9I CCNGG 2 cut(s) 11, 639
MvaI CCWGG 2 cut(s) 11, 639
MwoI GCNNNNNNNGC 2 cut(s) 357, 837
NarI GGCGCC 1 cut(s) 906
NdeII GATC 4 cut(s) 160, 189, 306, 871
NlaIII CATG 4 cut(s) 115, 128, 305, 338
NlaIV GGNNCC 5 cut(s) 168, 456, 777, 891, 907
NmuCI GTSAC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 220
PceI AGGCCT 1 cut(s) 924
PcsI WCGNNNNNNNCGW 2 cut(s) 405, 841
PfeI GAWTC 6 cut(s) 172, 229, 644, 680, 796, 929
PkrI GCNGC 2 cut(s) 481, 830
PluTI GGCGCC 1 cut(s) 909
Psp124BI GAGCTC 2 cut(s) 301, 768
Psp6I CCWGG 2 cut(s) 9, 637
PspEI GGTNACC 2 cut(s) 79, 372
PspFI CCCAGC 2 cut(s) 604, 716
PspGI CCWGG 2 cut(s) 9, 637
PspN4I GGNNCC 5 cut(s) 168, 456, 777, 891, 907
PspPI GGNCC 4 cut(s) 167, 620, 635, 710
PsuI RGATCY 4 cut(s) 160, 189, 306, 871
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 2 cut(s) 20, 346
RsaNI GTAC 2 cut(s) 19, 345
SacI GAGCTC 2 cut(s) 301, 768
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 2 cut(s) 480, 829
Sau3AI GATC 4 cut(s) 160, 189, 306, 871
Sau96I GGNCC 4 cut(s) 167, 620, 635, 710
ScrFI CCNGG 2 cut(s) 11, 639
SduI GDGCHC 3 cut(s) 301, 362, 768
SfcI CTRYAG 1 cut(s) 464
SfoI GGCGCC 1 cut(s) 907
SfuI TTCGAA 1 cut(s) 220
SinI GGWCC 2 cut(s) 167, 710
SseBI AGGCCT 1 cut(s) 924
SsiI CCGC 6 cut(s) 14, 158, 413, 524, 560, 829
SspDI GGCGCC 1 cut(s) 905
SspMI CTAG 3 cut(s) 570, 581, 894
SstI GAGCTC 2 cut(s) 301, 768
StuI AGGCCT 1 cut(s) 924
StyD4I CCNGG 2 cut(s) 9, 637
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 1 cut(s) 219
TaqI TCGA 3 cut(s) 220, 402, 927
TaqII GACCGA 1 cut(s) 67
TauI GCSGC 1 cut(s) 831
TfiI GAWTC 6 cut(s) 172, 229, 644, 680, 796, 929
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 878
TspGWI ACGGA 2 cut(s) 39, 80
VpaK11BI GGWCC 2 cut(s) 167, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 3 cut(s) 570, 581, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.