Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000123

Physical Location & Seq

Genomic Coordinates Forward (+)

45002814 .. 45003278

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATATGTCTAATGGTTTCTCAGTCTGGTTTAACTATGGCCACCATTTTCTTCTACACCTGCTTTTGGATCCCATTTATGCAGTTCAAAAAAGCTCTAGCTGGAATAATTAGTGATGTTCTGTTTCTCACTAATATCTACAAGCCAGAGGATCATAATACTTGCTGCAATGTAAACCAGCTGAGTCTTCCTGTGGCTAGGTTCCAGGATTTGCAGGCTCATTGTAGTACCGATAAGAGTGGACAAACTGCCGAAACCTGCTCAGTGTGCTTAGTGGAGTTTGAGGATGAAGATGTGGTGAGCCAATTGTCAAAGTGTGGGCATGTTTTCCATATGGATTGCATCGAGAAGTGGATGGAGAGAAATCACTTTACTTGTCCACTTTGCAGATCCTTGTTTTTTAATGTGAATACTTGTCATGTAAAATGTGATGATGATTTTCTACCACATTCTTGGCAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031224 GO:0031225 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

154

Amino Acids

17.77

Weight (kDa)

5.33

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	82 - 130	6e-11	RING-H2 zinc finger domain
zf-RING_2	PF13639	86 - 130	6.9e-14	Ring finger domain
zf-ANAPC11	PF12861	86 - 133	1.6e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_UBOX	PF13445	87 - 127	1e-09	RING-type zinc-finger
zf-C3HC4	PF00097	87 - 129	7.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	87 - 129	8.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	87 - 115	2e-08	RING-like zinc finger
zf-RING_5	PF14634	87 - 130	7.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38140
fragaria_vesca	FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica	MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica	Prupe.8G183300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata	RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora	Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa	Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha	Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana	Rw4G024160

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	2 cut(s)	68, 266
AclWI	GGATC	4 cut(s)	64, 77, 159, 384
AcoI	YGGCCR	1 cut(s)	39
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	95, 101, 181
AluI	AGCT	3 cut(s)	95, 101, 181
AlwI	GGATC	4 cut(s)	64, 77, 159, 384
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	2 cut(s)	98, 198
BfuAI	ACCTGC	2 cut(s)	68, 266
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	71, 203
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	292, 360
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	35, 173, 276
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	66
BsnI	GGCC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	69, 151, 389
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	3 cut(s)	34, 174, 275
BspLI	GGNNCC	2 cut(s)	71, 203
BspMI	ACCTGC	2 cut(s)	68, 266
BspPI	GGATC	4 cut(s)	64, 77, 159, 384
BsrDI	GCAATG	1 cut(s)	175
BssMI	GATC	3 cut(s)	69, 151, 389
Bst2UI	CCWGG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	4 cut(s)	21, 182, 262, 271
BstF5I	GGATG	2 cut(s)	292, 360
BstKTI	GATC	3 cut(s)	72, 154, 392
BstMBI	GATC	3 cut(s)	69, 151, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	69, 389
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	2 cut(s)	69, 389
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	292, 360
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	2 cut(s)	68, 266
Cac8I	GCNNGC	1 cut(s)	216
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	323, 419
CviJI	RGCY	8 cut(s)	41, 95, 101, 145, 181, 197, 218, 303
CviKI_1	RGCY	8 cut(s)	41, 95, 101, 145, 181, 197, 218, 303
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	4 cut(s)	21, 182, 262, 271
DpnI	GATC	3 cut(s)	71, 153, 391
DpnII	GATC	3 cut(s)	69, 151, 389
EaeI	YGGCCR	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	326, 422
FaiI	YATR	8 cut(s)	7, 38, 80, 156, 324, 333, 335, 420
FatI	CATG	2 cut(s)	322, 418
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	299, 367
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	98, 198
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	326, 422
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	175, 242, 380
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	3 cut(s)	175, 242, 380
HpyCH4V	TGCA	5 cut(s)	82, 168, 214, 342, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	4 cut(s)	21, 182, 262, 271
Hsp92II	CATG	2 cut(s)	326, 422
Kzo9I	GATC	3 cut(s)	69, 151, 389
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	98, 198
MalI	GATC	3 cut(s)	71, 153, 391
MboI	GATC	3 cut(s)	69, 151, 389
MboII	GAAGA	3 cut(s)	43, 179, 302
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	2 cut(s)	69, 389
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	2 cut(s)	108, 305
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	2 cut(s)	142, 277
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	32, 402
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	3 cut(s)	69, 151, 389
NlaIII	CATG	2 cut(s)	326, 422
NlaIV	GGNNCC	2 cut(s)	71, 203
NspI	RCATGY	1 cut(s)	326
PaqCI	CACCTGC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	71, 203
PsuI	RGATCY	2 cut(s)	69, 389
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	32, 402
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	3 cut(s)	69, 151, 389
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	6 cut(s)	62, 97, 103, 183, 203, 260
SfaNI	GCATC	1 cut(s)	351
Sse9I	AATT	2 cut(s)	108, 305
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	2 cut(s)	98, 198
StyD4I	CCNGG	1 cut(s)	204
TaqI	TCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	108, 305
Tru1I	TTAA	2 cut(s)	32, 402
Tru9I	TTAA	2 cut(s)	32, 402
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	2 cut(s)	98, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.