ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 218 |
| Acc16I | TGCGCA | 1 cut(s) | 395 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 165 |
| AccBSI | CCGCTC | 1 cut(s) | 461 |
| AciI | CCGC | 4 cut(s) | 5, 149, 341, 461 |
| AclWI | GGATC | 2 cut(s) | 127, 184 |
| AcoI | YGGCCR | 1 cut(s) | 103 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 165, 199, 355, 444 |
| AgsI | TTSAA | 1 cut(s) | 232 |
| Alw26I | GTCTC | 1 cut(s) | 5 |
| AlwI | GGATC | 2 cut(s) | 127, 184 |
| AoxI | GGCC | 1 cut(s) | 103 |
| ApeKI | GCWGC | 1 cut(s) | 343 |
| AspA2I | CCTAGG | 1 cut(s) | 262 |
| AspLEI | GCGC | 1 cut(s) | 396 |
| AspS9I | GGNCC | 2 cut(s) | 269, 435 |
| AsuHPI | GGTGA | 1 cut(s) | 142 |
| AvaII | GGWCC | 2 cut(s) | 269, 435 |
| AvrII | CCTAGG | 1 cut(s) | 262 |
| BbsI | GAAGAC | 1 cut(s) | 214 |
| BbvI | GCAGC | 1 cut(s) | 330 |
| BccI | CCATC | 1 cut(s) | 121 |
| BceAI | ACGGC | 1 cut(s) | 331 |
| BclI | TGATCA | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 5 |
| BfaI | CTAG | 1 cut(s) | 263 |
| BisI | GCNGC | 2 cut(s) | 150, 344 |
| BlnI | CCTAGG | 1 cut(s) | 262 |
| BlsI | GCNGC | 2 cut(s) | 151, 345 |
| Bme18I | GGWCC | 2 cut(s) | 269, 435 |
| BmgT120I | GGNCC | 2 cut(s) | 269, 435 |
| BmiI | GGNNCC | 2 cut(s) | 21, 436 |
| BmsI | GCATC | 3 cut(s) | 61, 325, 393 |
| BpiI | GAAGAC | 1 cut(s) | 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 173 |
| BpuEI | CTTGAG | 2 cut(s) | 314, 374 |
| BsaBI | GATNNNNATC | 1 cut(s) | 131 |
| BsaJI | CCNNGG | 2 cut(s) | 262, 272 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 165, 199, 355, 444 |
| Bse118I | RCCGGY | 1 cut(s) | 105 |
| Bse3DI | GCAATG | 1 cut(s) | 403 |
| Bse8I | GATNNNNATC | 1 cut(s) | 131 |
| BseDI | CCNNGG | 2 cut(s) | 262, 272 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseJI | GATNNNNATC | 1 cut(s) | 131 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 165, 199, 355, 444 |
| BseMI | GCAATG | 1 cut(s) | 403 |
| BseRI | GAGGAG | 7 cut(s) | 12, 23, 53, 78, 215, 218, 221 |
| BseXI | GCAGC | 1 cut(s) | 330 |
| BsgI | GTGCAG | 2 cut(s) | 12, 329 |
| BshFI | GGCC | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 106 |
| BslFI | GGGAC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 165, 199, 355, 444 |
| BsmAI | GTCTC | 1 cut(s) | 5 |
| BsmBI | CGTCTC | 1 cut(s) | 5 |
| BsmFI | GGGAC | 1 cut(s) | 448 |
| BsnI | GGCC | 1 cut(s) | 105 |
| Bsp143I | GATC | 4 cut(s) | 132, 153, 189, 451 |
| Bsp19I | CCATGG | 1 cut(s) | 272 |
| BspACI | CCGC | 4 cut(s) | 5, 149, 341, 461 |
| BspANI | GGCC | 1 cut(s) | 105 |
| BspLI | GGNNCC | 2 cut(s) | 21, 436 |
| BspPI | GGATC | 2 cut(s) | 127, 184 |
| BsrBI | CCGCTC | 1 cut(s) | 461 |
| BsrDI | GCAATG | 1 cut(s) | 403 |
| BsrFI | RCCGGY | 1 cut(s) | 105 |
| BssAI | RCCGGY | 1 cut(s) | 105 |
| BssECI | CCNNGG | 2 cut(s) | 262, 272 |
| BssMI | GATC | 4 cut(s) | 132, 153, 189, 451 |
| BssT1I | CCWWGG | 2 cut(s) | 262, 272 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| BstDEI | CTNAG | 2 cut(s) | 117, 173 |
| BstDSI | CCRYGG | 1 cut(s) | 272 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 353 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstHHI | GCGC | 1 cut(s) | 396 |
| BstKTI | GATC | 4 cut(s) | 135, 156, 192, 454 |
| BstMAI | GTCTC | 1 cut(s) | 5 |
| BstMBI | GATC | 4 cut(s) | 132, 153, 189, 451 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstV1I | GCAGC | 1 cut(s) | 330 |
| BstV2I | GAAGAC | 1 cut(s) | 214 |
| BsuRI | GGCC | 1 cut(s) | 105 |
| BtgI | CCRYGG | 1 cut(s) | 272 |
| BtgZI | GCGATG | 2 cut(s) | 140, 370 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| BtsI | GCAGTG | 1 cut(s) | 375 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| CfoI | GCGC | 1 cut(s) | 396 |
| Cfr10I | RCCGGY | 1 cut(s) | 105 |
| Cfr13I | GGNCC | 2 cut(s) | 269, 435 |
| CviAII | CATG | 2 cut(s) | 273, 292 |
| CviJI | RGCY | 7 cut(s) | 20, 44, 54, 105, 172, 242, 407 |
| CviKI_1 | RGCY | 7 cut(s) | 20, 44, 54, 105, 172, 242, 407 |
| DdeI | CTNAG | 2 cut(s) | 117, 173 |
| DpnI | GATC | 4 cut(s) | 134, 155, 191, 453 |
| DpnII | GATC | 4 cut(s) | 132, 153, 189, 451 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 218 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 218 |
| EaeI | YGGCCR | 1 cut(s) | 103 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco130I | CCWWGG | 2 cut(s) | 262, 272 |
| Eco47I | GGWCC | 2 cut(s) | 269, 435 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 353 |
| EcoO109I | RGGNCCY | 1 cut(s) | 435 |
| EcoT14I | CCWWGG | 2 cut(s) | 262, 272 |
| ErhI | CCWWGG | 2 cut(s) | 262, 272 |
| Esp3I | CGTCTC | 1 cut(s) | 5 |
| FaeI | CATG | 2 cut(s) | 276, 295 |
| FaiI | YATR | 8 cut(s) | 164, 166, 274, 293, 307, 312, 361, 392 |
| FaqI | GGGAC | 1 cut(s) | 448 |
| FatI | CATG | 2 cut(s) | 272, 291 |
| FauNDI | CATATG | 1 cut(s) | 164 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| Fnu4HI | GCNGC | 2 cut(s) | 150, 344 |
| FokI | GGATG | 1 cut(s) | 347 |
| Fsp4HI | GCNGC | 2 cut(s) | 150, 344 |
| FspBI | CTAG | 1 cut(s) | 263 |
| FspI | TGCGCA | 1 cut(s) | 395 |
| GlaI | GCGC | 1 cut(s) | 395 |
| GluI | GCNGC | 2 cut(s) | 150, 344 |
| HaeIII | GGCC | 1 cut(s) | 105 |
| HapII | CCGG | 1 cut(s) | 106 |
| HhaI | GCGC | 1 cut(s) | 396 |
| Hin1II | CATG | 2 cut(s) | 276, 295 |
| Hin6I | GCGC | 1 cut(s) | 394 |
| HinP1I | GCGC | 1 cut(s) | 394 |
| HinfI | GANTC | 2 cut(s) | 83, 256 |
| HpaII | CCGG | 1 cut(s) | 106 |
| HphI | GGTGA | 1 cut(s) | 142 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 422 |
| Hpy188III | TCNNGA | 2 cut(s) | 80, 353 |
| HpyAV | CCTTC | 4 cut(s) | 241, 359, 367, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 5 cut(s) | 29, 74, 346, 384, 466 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 173 |
| Hsp92II | CATG | 2 cut(s) | 276, 295 |
| HspAI | GCGC | 1 cut(s) | 394 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| Kzo9I | GATC | 4 cut(s) | 132, 153, 189, 451 |
| LmnI | GCTCC | 3 cut(s) | 25, 343, 458 |
| LpnPI | CCDG | 5 cut(s) | 39, 119, 149, 182, 410 |
| Lsp1109I | GCAGC | 1 cut(s) | 330 |
| LweI | GCATC | 3 cut(s) | 61, 325, 393 |
| MaeI | CTAG | 1 cut(s) | 263 |
| MalI | GATC | 4 cut(s) | 134, 155, 191, 453 |
| MbiI | CCGCTC | 1 cut(s) | 461 |
| MboI | GATC | 4 cut(s) | 132, 153, 189, 451 |
| MboII | GAAGA | 3 cut(s) | 80, 208, 214 |
| MluCI | AATT | 3 cut(s) | 75, 227, 286 |
| MmeI | TCCRAC | 3 cut(s) | 40, 183, 217 |
| MnlI | CCTC | 9 cut(s) | 31, 33, 34, 56, 193, 196, 199, 202, 349 |
| MseI | TTAA | 1 cut(s) | 410 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MspA1I | CMGCKG | 1 cut(s) | 343 |
| MspI | CCGG | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NcoI | CCATGG | 1 cut(s) | 272 |
| NdeI | CATATG | 1 cut(s) | 164 |
| NdeII | GATC | 4 cut(s) | 132, 153, 189, 451 |
| NlaIII | CATG | 2 cut(s) | 276, 295 |
| NlaIV | GGNNCC | 2 cut(s) | 21, 436 |
| NsbI | TGCGCA | 1 cut(s) | 395 |
| PfeI | GAWTC | 2 cut(s) | 83, 256 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 165 |
| PkrI | GCNGC | 2 cut(s) | 151, 345 |
| PpuMI | RGGWCCY | 1 cut(s) | 435 |
| Psp5II | RGGWCCY | 1 cut(s) | 435 |
| PspN4I | GGNNCC | 2 cut(s) | 21, 436 |
| PspPI | GGNCC | 2 cut(s) | 269, 435 |
| PspPPI | RGGWCCY | 1 cut(s) | 435 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SaqAI | TTAA | 1 cut(s) | 410 |
| SatI | GCNGC | 2 cut(s) | 150, 344 |
| Sau3AI | GATC | 4 cut(s) | 132, 153, 189, 451 |
| Sau96I | GGNCC | 2 cut(s) | 269, 435 |
| SetI | ASST | 7 cut(s) | 34, 99, 268, 351, 360, 429, 440 |
| SfaNI | GCATC | 3 cut(s) | 61, 325, 393 |
| SinI | GGWCC | 2 cut(s) | 269, 435 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| SmlI | CTYRAG | 2 cut(s) | 329, 353 |
| SmoI | CTYRAG | 2 cut(s) | 329, 353 |
| Sse9I | AATT | 3 cut(s) | 75, 227, 286 |
| SsiI | CCGC | 4 cut(s) | 5, 149, 341, 461 |
| SspMI | CTAG | 1 cut(s) | 263 |
| StyI | CCWWGG | 2 cut(s) | 262, 272 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TasI | AATT | 3 cut(s) | 75, 227, 286 |
| TauI | GCSGC | 1 cut(s) | 152 |
| TfiI | GAWTC | 2 cut(s) | 83, 256 |
| Tru1I | TTAA | 1 cut(s) | 410 |
| Tru9I | TTAA | 1 cut(s) | 410 |
| TscAI | CASTG | 1 cut(s) | 375 |
| TseI | GCWGC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 1 cut(s) | 414 |
| TspRI | CASTG | 1 cut(s) | 375 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 165 |
| VpaK11BI | GGWCC | 2 cut(s) | 269, 435 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 353 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 298 |
| XmaJI | CCTAGG | 1 cut(s) | 262 |
| XspI | CTAG | 1 cut(s) | 263 |