Rh2AG574700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000123
Physical Location & Seq
Reverse (-)
80440848 .. 80441440
593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG574700.1

Sequence Viewer

Length: 498 bp
ATGGTGGTGGATTTGGAACTGAGGTATGAAAAATGCCATGGTATCTACCGGGGATGTGGTTTTTTTGTGCATGGGACTGGTGGCTATGATGGGGTATTGACGGCGTTGATGGAGGGAATGGGTACAGTGTTGGTTACAACGCAGGTGGAGGCCGAAGTGGTTGAAGATGGGCAGACCGGTCAACCTGAGGTGTTGTCGGTGGCCGGCCGGTGTCTGAACTGGATGGATGAGGGACTAGCATCTGGGCTCGGGTCGGCGGCTGGGAAGCTCGTGGGAACGCAGCTCATGGATGAGGGGCTGCTTGAGTTTGGGCCATGTGTAGCTGACGCTGGACTGGGACTCAATGATGAAGGGCTGCTGGAGATTGGGTCGGACGCTACACTAGTGAGGCCTGAGGGCCTAGTGGGGACTGGTGGGCCTACATCTCCTATTGTAGATGGGCTTGATGCTGCAAGAAGAACAATTTTGGATGTGCGTAAATGGTGTCAAGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.17

Weight (kDa)

4.29

Isoelectric Point (pI)

15.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 201, 205
AfaI GTAC 1 cut(s) 124
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 164
AhlI ACTAGT 1 cut(s) 382
AluBI AGCT 3 cut(s) 268, 283, 323
AluI AGCT 3 cut(s) 268, 283, 323
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 7 cut(s) 150, 201, 205, 311, 389, 397, 416
ApeKI GCWGC 4 cut(s) 280, 298, 355, 449
AsiGI ACCGGT 1 cut(s) 176
AspS9I GGNCC 3 cut(s) 311, 397, 416
AsuC2I CCSGG 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 248
AxyI CCTNAGG 2 cut(s) 186, 393
BanII GRGCYC 1 cut(s) 249
BauI CACGAG 1 cut(s) 269
BbvI GCAGC 4 cut(s) 285, 292, 342, 436
BccI CCATC 5 cut(s) 83, 103, 161, 217, 431
BceAI ACGGC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 3 cut(s) 236, 383, 401
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 5 cut(s) 258, 281, 299, 356, 450
BlsI GCNGC 5 cut(s) 259, 282, 300, 357, 451
Bme1390I CCNGG 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 311, 397, 416
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 248, 436
BmuI ACTGGG 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 37, 49
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bse118I RCCGGY 3 cut(s) 176, 203, 207
Bse1I ACTGG 4 cut(s) 82, 224, 339, 415
Bse21I CCTNAGG 2 cut(s) 186, 393
BseDI CCNNGG 2 cut(s) 37, 49
BseGI GGATG 5 cut(s) 59, 228, 232, 295, 475
BseMII CTCAG 3 cut(s) 11, 177, 384
BseNI ACTGG 4 cut(s) 82, 224, 339, 415
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 4 cut(s) 285, 292, 342, 436
BseYI CCCAGC 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 7 cut(s) 152, 203, 207, 313, 391, 399, 418
BshTI ACCGGT 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 4 cut(s) 49, 177, 204, 208
BslFI GGGAC 4 cut(s) 88, 246, 351, 421
BsmFI GGGAC 4 cut(s) 88, 246, 351, 421
BsnI GGCC 7 cut(s) 152, 203, 207, 313, 391, 399, 418
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 1 cut(s) 257
BspANI GGCC 7 cut(s) 152, 203, 207, 313, 391, 399, 418
BspCNI CTCAG 3 cut(s) 12, 178, 385
BspMI ACCTGC 1 cut(s) 133
BsrFI RCCGGY 3 cut(s) 176, 203, 207
BsrI ACTGG 4 cut(s) 82, 224, 339, 415
BssAI RCCGGY 3 cut(s) 176, 203, 207
BssECI CCNNGG 2 cut(s) 37, 49
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 20, 186, 393
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 5 cut(s) 59, 228, 232, 295, 475
BstMCI CGRYCG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 285, 292, 342, 436
BstZI CGGCCG 1 cut(s) 205
Bsu36I CCTNAGG 2 cut(s) 186, 393
BsuRI GGCC 7 cut(s) 152, 203, 207, 313, 391, 399, 418
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 5 cut(s) 59, 228, 232, 295, 475
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 205
Cfr10I RCCGGY 3 cut(s) 176, 203, 207
Cfr13I GGNCC 3 cut(s) 311, 397, 416
CseI GACGC 2 cut(s) 335, 383
Csp6I GTAC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 176
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviAII CATG 4 cut(s) 38, 71, 286, 315
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 3 cut(s) 20, 186, 393
EaeI YGGCCR 2 cut(s) 201, 205
EagI CGGCCG 1 cut(s) 205
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 249
Eco52I CGGCCG 1 cut(s) 205
Eco81I CCTNAGG 2 cut(s) 186, 393
Eco88I CYCGRG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 4 cut(s) 41, 74, 289, 318
FaiI YATR 6 cut(s) 27, 39, 72, 87, 287, 316
FaqI GGGAC 4 cut(s) 88, 246, 351, 421
FatI CATG 4 cut(s) 37, 70, 285, 314
Fnu4HI GCNGC 5 cut(s) 258, 281, 299, 356, 450
FokI GGATG 5 cut(s) 66, 235, 239, 302, 482
FriOI GRGCYC 1 cut(s) 249
FseI GGCCGGCC 1 cut(s) 207
Fsp4HI GCNGC 5 cut(s) 258, 281, 299, 356, 450
FspBI CTAG 3 cut(s) 236, 383, 401
GluI GCNGC 5 cut(s) 258, 281, 299, 356, 450
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 7 cut(s) 152, 203, 207, 313, 391, 399, 418
HapII CCGG 4 cut(s) 49, 177, 204, 208
HgaI GACGC 2 cut(s) 335, 383
Hin1II CATG 4 cut(s) 41, 74, 289, 318
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 1 cut(s) 339
HpaII CCGG 4 cut(s) 49, 177, 204, 208
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 216, 373
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 70, 452
HpyF3I CTNAG 3 cut(s) 20, 186, 393
Hsp92II CATG 4 cut(s) 41, 74, 289, 318
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Lsp1109I GCAGC 4 cut(s) 285, 292, 342, 436
LweI GCATC 2 cut(s) 248, 436
MaeI CTAG 3 cut(s) 236, 383, 401
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 2 cut(s) 176, 468
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 462
MlyI GAGTC 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 8 cut(s) 15, 106, 142, 181, 223, 286, 381, 388
MroNI GCCGGC 1 cut(s) 203
MspI CCGG 4 cut(s) 49, 177, 204, 208
MspR9I CCNGG 1 cut(s) 50
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 37
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 4 cut(s) 41, 74, 289, 318
PaqCI CACCTGC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 391
PdiI GCCGGC 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 5 cut(s) 259, 282, 300, 357, 451
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 260
PspPI GGNCC 3 cut(s) 311, 397, 416
RigI GGCCGGCC 1 cut(s) 207
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 5 cut(s) 258, 281, 299, 356, 450
Sau96I GGNCC 3 cut(s) 311, 397, 416
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 249
SetI ASST 8 cut(s) 26, 147, 187, 192, 270, 285, 325, 493
SfaNI GCATC 2 cut(s) 248, 436
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 382
Sse9I AATT 1 cut(s) 462
SseBI AGGCCT 1 cut(s) 391
SsiI CCGC 1 cut(s) 257
SspMI CTAG 3 cut(s) 236, 383, 401
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 127
TasI AATT 1 cut(s) 462
TauI GCSGC 1 cut(s) 260
TscAI CASTG 1 cut(s) 132
TseI GCWGC 4 cut(s) 280, 298, 355, 449
TspDTI ATGAA 2 cut(s) 42, 363
TspRI CASTG 1 cut(s) 132
XspI CTAG 3 cut(s) 236, 383, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.