RchiOBHm_Chr2g0109311

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000123
Physical Location & Seq
Reverse (-)
20719256 .. 20721053
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48315

Sequence Viewer

Length: 1047 bp
ATGTTGCTGCTGGCAGATTATGACGTCGTTTCAGCTCTTGGGGAGGTGCCGCTGCATCTTCTTGAAGTTTGGGTGGCGGTGAAGGGGTTGCACATAGCTATGCGCAATGAGAAGGCGCTGTCTTTGATCGGCCGTGCACTGGGGACTTTTGTTCGGGTTGATCAGGGGGCAGTGCAGCGGAAGGACACGATTCAAAGGATTCATGTCATCCATGATGTTCGTCGGCGGATCTGGGCGCGGCGGCAATTCGATTTTTCGCCAACGGTCTCCGTGTTGGTAGAACTTCAATACGAGAAGTGTCATGGGCTTTGCATGGCATGTGGTTTCTTCAAGCATGGAAGTGGTGTTTGTGATCGGAGGCTCGAAACGGAGGCGTGGTCACTGATGTTGTCTGGCCAAGTCGGTCTGGATGTGGATTGTGGGTTGGTTTTGGCGCCAAATTCACCGGCTTCTGTGGCGGCGGTCAGTGGATTGGGAATGACCTATACGGCGTCGGTGGGGTTGTCGGTGCCGGAGGTTGTAGTGACGGTGGATACGGACCATACAGTGGAGGGATCAGTGTCTGCTACGAATGCAGTGTTAATTCGTCCGGAAAATCTGGCGGGAAAACCTGACTTTGAATTAGAGTTGACCGCTGGGTTGACTGGGCCAGGGCTGCAGGTGCTTGGGCCAGGCCTCAATGCTGATGGGACAAAGGAGGATTCTGTTACTGGGCCAGGGTTGAAGAGGTTTGGGCCGGCTTTAAGGTTTTGGGTGTTTTGGATCTCAACTCTGAGACTATGGTGGTCGCAGGCACAATGGTTTGGGATGGATTTGGTTTCCTCCGGTTCCAAACTTTGCGGCTGCATCATAGAGGCTTTATCGACTGCTTGGGGCGCTGCGGATCCGCATCCAGTGGGATTTGGGTTCATTTCGATACTCCTAGTTTCGCTTGACCCTCTTGGAGTGTCGTCAAGTGGTGCAACGCCGGGGGTGCTAGGATGGGTGGTGGTGGTCGCTGCAAGGGTGGTGGTCGCGGTGTTGCAGCTGTGCGTGCGTCTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

348

Amino Acids

37.2

Weight (kDa)

6.13

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 72 - 118 5.3e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
AatII GACGTC 1 cut(s) 27
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 649
AccB1I GGYRCC 3 cut(s) 46, 433, 508
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 1 cut(s) 1039
AccII CGCG 2 cut(s) 238, 1016
AccIII TCCGGA 1 cut(s) 589
AclWI GGATC 5 cut(s) 236, 562, 770, 878, 891
AcoI YGGCCR 2 cut(s) 130, 394
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 3 cut(s) 24, 434, 491
AfiI CCNNNNNNNGG 2 cut(s) 139, 547
AgsI TTSAA 6 cut(s) 65, 194, 287, 331, 620, 724
AjnI CCWGG 3 cut(s) 649, 670, 715
AluBI AGCT 3 cut(s) 35, 98, 1027
AluI AGCT 3 cut(s) 35, 98, 1027
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 271, 769
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 5 cut(s) 236, 562, 770, 878, 891
AlwNI CAGNNNCTG 1 cut(s) 563
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 7 cut(s) 130, 394, 647, 668, 673, 713, 734
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 8 cut(s) 7, 52, 175, 655, 843, 878, 998, 1024
ApoI RAATTY 1 cut(s) 439
AspLEI GCGC 5 cut(s) 105, 118, 238, 436, 878
AspS9I GGNCC 5 cut(s) 538, 647, 668, 713, 734
AsuC2I CCSGG 1 cut(s) 969
AsuHPI GGTGA 2 cut(s) 91, 435
AvaII GGWCC 1 cut(s) 538
BaeGI GKGCMC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 396
BamHI GGATCC 1 cut(s) 883
BanI GGYRCC 3 cut(s) 46, 433, 508
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 7 cut(s) 39, 187, 642, 830, 865, 985, 1036
BccI CCATC 3 cut(s) 680, 802, 975
BceAI ACGGC 2 cut(s) 117, 504
BciT130I CCWGG 3 cut(s) 651, 672, 717
BciVI GTATCC 1 cut(s) 526
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 969
BcoDI GTCTC 2 cut(s) 271, 769
BfaI CTAG 3 cut(s) 923, 977, 1045
BfmI CTRYAG 1 cut(s) 656
BfoI RGCGCY 3 cut(s) 119, 437, 879
BfuAI ACCTGC 1 cut(s) 649
BfuI GTATCC 1 cut(s) 526
Bme1390I CCNGG 4 cut(s) 651, 672, 717, 969
Bme18I GGWCC 1 cut(s) 538
BmgT120I GGNCC 5 cut(s) 538, 647, 668, 713, 734
BmiI GGNNCC 5 cut(s) 48, 435, 510, 829, 885
BmrFI CCNGG 4 cut(s) 651, 672, 717, 969
BmrI ACTGGG 3 cut(s) 149, 654, 720
BmsI GCATC 3 cut(s) 64, 855, 898
BmuI ACTGGG 3 cut(s) 149, 654, 720
BpuMI CCSGG 1 cut(s) 969
BsaBI GATNNNNATC 1 cut(s) 888
BsaHI GRCGYC 3 cut(s) 24, 434, 491
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 650, 716, 968
BsaWI WCCGGW 2 cut(s) 589, 824
BsaXI ACNNNNNCTCC 2 cut(s) 362, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 547
Bse118I RCCGGY 2 cut(s) 445, 736
Bse1I ACTGG 4 cut(s) 144, 649, 715, 893
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 888
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 3 cut(s) 651, 672, 717
BseDI CCNNGG 3 cut(s) 650, 716, 968
BseGI GGATG 5 cut(s) 207, 415, 813, 889, 986
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 2 cut(s) 139, 547
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 4 cut(s) 144, 649, 715, 893
BseSI GKGCMC 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 7 cut(s) 39, 187, 642, 830, 865, 985, 1036
BseYI CCCAGC 1 cut(s) 635
BsgI GTGCAG 1 cut(s) 194
Bsh1236I CGCG 2 cut(s) 238, 1016
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 7 cut(s) 132, 396, 649, 670, 675, 715, 736
BshNI GGYRCC 3 cut(s) 46, 433, 508
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 6 cut(s) 446, 512, 590, 737, 825, 968
BslFI GGGAC 2 cut(s) 157, 703
BslI CCNNNNNNNGG 2 cut(s) 139, 547
BsmAI GTCTC 2 cut(s) 271, 769
BsmFI GGGAC 2 cut(s) 157, 703
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 7 cut(s) 132, 396, 649, 670, 675, 715, 736
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 139
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
BspANI GGCC 7 cut(s) 132, 396, 649, 670, 675, 715, 736
BspCNI CTCAG 1 cut(s) 765
BspEI TCCGGA 1 cut(s) 589
BspFNI CGCG 2 cut(s) 238, 1016
BspLI GGNNCC 5 cut(s) 48, 435, 510, 829, 885
BspMAI CTGCAG 1 cut(s) 660
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 5 cut(s) 236, 562, 770, 878, 891
BspT107I GGYRCC 3 cut(s) 46, 433, 508
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 2 cut(s) 445, 736
BsrI ACTGG 4 cut(s) 144, 649, 715, 893
BssAI RCCGGY 2 cut(s) 445, 736
BssECI CCNNGG 3 cut(s) 650, 716, 968
BssMI GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
BssNI GRCGYC 3 cut(s) 24, 434, 491
Bst2UI CCWGG 3 cut(s) 651, 672, 717
Bst4CI ACNGT 3 cut(s) 265, 529, 547
Bst6I CTCTTC 1 cut(s) 719
BstACI GRCGYC 3 cut(s) 24, 434, 491
BstC8I GCNNGC 4 cut(s) 12, 738, 792, 1034
BstDEI CTNAG 1 cut(s) 773
BstF5I GGATG 5 cut(s) 207, 415, 813, 889, 986
BstFNI CGCG 2 cut(s) 238, 1016
BstH2I RGCGCY 3 cut(s) 119, 437, 879
BstHHI GCGC 5 cut(s) 105, 118, 238, 436, 878
BstKTI GATC 7 cut(s) 129, 163, 231, 355, 557, 765, 886
BstMAI GTCTC 2 cut(s) 271, 769
BstMBI GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 7 cut(s) 455, 572, 655, 661, 875, 973, 1033
BstNI CCWGG 3 cut(s) 651, 672, 717
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 4 cut(s) 649, 670, 715, 967
BstSFI CTRYAG 1 cut(s) 656
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 2 cut(s) 238, 1016
BstV1I GCAGC 7 cut(s) 39, 187, 642, 830, 865, 985, 1036
BstX2I RGATCY 3 cut(s) 228, 762, 883
BstYI RGATCY 3 cut(s) 228, 762, 883
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 7 cut(s) 132, 396, 649, 670, 675, 715, 736
BtsCI GGATG 5 cut(s) 207, 415, 813, 889, 986
BtsI GCAGTG 2 cut(s) 177, 582
BtsIMutI CAGTG 8 cut(s) 137, 177, 380, 472, 552, 564, 582, 900
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 4 cut(s) 12, 738, 792, 1034
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 5 cut(s) 105, 118, 238, 436, 878
Cfr10I RCCGGY 2 cut(s) 445, 736
Cfr13I GGNCC 5 cut(s) 538, 647, 668, 713, 734
CseI GACGC 2 cut(s) 480, 1025
CspCI CAANNNNNGTGG 2 cut(s) 990, 1025
CviAII CATG 6 cut(s) 203, 212, 302, 313, 318, 335
DdeI CTNAG 1 cut(s) 773
DinI GGCGCC 1 cut(s) 435
DpnI GATC 7 cut(s) 128, 162, 230, 354, 556, 764, 885
DpnII GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
EaeI YGGCCR 2 cut(s) 130, 394
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
EciI GGCGGA 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 538
Eco52I CGGCCG 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 649, 670, 715
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
FaeI CATG 6 cut(s) 206, 215, 305, 316, 321, 338
FaqI GGGAC 2 cut(s) 157, 703
FatI CATG 6 cut(s) 202, 211, 301, 312, 317, 334
FauI CCCGC 1 cut(s) 595
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 1 cut(s) 1039
FokI GGATG 5 cut(s) 194, 422, 820, 876, 993
FspBI CTAG 3 cut(s) 923, 977, 1045
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 5 cut(s) 104, 117, 237, 435, 877
GsaI CCCAGC 1 cut(s) 639
HaeII RGCGCY 3 cut(s) 119, 437, 879
HaeIII GGCC 7 cut(s) 132, 396, 649, 670, 675, 715, 736
HapII CCGG 6 cut(s) 446, 512, 590, 737, 825, 968
HgaI GACGC 2 cut(s) 480, 1025
HhaI GCGC 5 cut(s) 105, 118, 238, 436, 878
Hin1I GRCGYC 3 cut(s) 24, 434, 491
Hin1II CATG 6 cut(s) 206, 215, 305, 316, 321, 338
Hin6I GCGC 5 cut(s) 103, 116, 236, 434, 876
HinP1I GCGC 5 cut(s) 103, 116, 236, 434, 876
HincII GTYRAC 2 cut(s) 630, 642
HindII GTYRAC 2 cut(s) 630, 642
HinfI GANTC 3 cut(s) 190, 199, 701
HpaII CCGG 6 cut(s) 446, 512, 590, 737, 825, 968
HphI GGTGA 2 cut(s) 91, 435
Hpy166II GTNNAC 4 cut(s) 137, 630, 642, 1040
Hpy188I TCNGA 2 cut(s) 357, 774
Hpy188III TCNNGA 3 cut(s) 62, 407, 590
Hpy8I GTNNAC 4 cut(s) 137, 630, 642, 1040
Hpy99I CGWCG 3 cut(s) 29, 225, 496
HpyAV CCTTC 3 cut(s) 76, 106, 175
HpyCH4III ACNGT 3 cut(s) 265, 529, 547
HpyCH4IV ACGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 7 cut(s) 455, 572, 655, 661, 875, 973, 1033
HpyF3I CTNAG 1 cut(s) 773
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 3 cut(s) 24, 434, 491
Hsp92II CATG 6 cut(s) 206, 215, 305, 316, 321, 338
HspAI GCGC 5 cut(s) 103, 116, 236, 434, 876
KasI GGCGCC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 589
KroI GCCGGC 1 cut(s) 736
KroNI GCCGGC 1 cut(s) 738
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
Lsp1109I GCAGC 7 cut(s) 39, 187, 642, 830, 865, 985, 1036
LweI GCATC 3 cut(s) 64, 855, 898
MaeI CTAG 3 cut(s) 923, 977, 1045
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 3 cut(s) 378, 523, 706
MalI GATC 7 cut(s) 128, 162, 230, 354, 556, 764, 885
MboI GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
MboII GAAGA 3 cut(s) 50, 319, 736
MflI RGATCY 3 cut(s) 228, 762, 883
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 4 cut(s) 245, 439, 582, 620
MluNI TGGCCA 1 cut(s) 396
Mly113I GGCGCC 1 cut(s) 434
Mox20I TGGCCA 1 cut(s) 396
MroI TCCGGA 1 cut(s) 589
MroNI GCCGGC 1 cut(s) 736
MscI TGGCCA 1 cut(s) 396
MseI TTAA 2 cut(s) 581, 743
MslI CAYNNNNRTG 2 cut(s) 98, 339
Msp20I TGGCCA 1 cut(s) 396
MspA1I CMGCKG 4 cut(s) 52, 178, 635, 1027
MspI CCGG 6 cut(s) 446, 512, 590, 737, 825, 968
MspR9I CCNGG 4 cut(s) 651, 672, 717, 969
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 3 cut(s) 651, 672, 717
MvnI CGCG 2 cut(s) 238, 1016
MwoI GCNNNNNNNGC 7 cut(s) 455, 572, 655, 661, 875, 973, 1033
NaeI GCCGGC 1 cut(s) 738
NarI GGCGCC 1 cut(s) 434
NciI CCSGG 1 cut(s) 969
NdeII GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
NgoMIV GCCGGC 1 cut(s) 736
NlaIII CATG 6 cut(s) 206, 215, 305, 316, 321, 338
NlaIV GGNNCC 5 cut(s) 48, 435, 510, 829, 885
NmuCI GTSAC 2 cut(s) 378, 523
NsbI TGCGCA 1 cut(s) 104
NspI RCATGY 1 cut(s) 321
PaqCI CACCTGC 1 cut(s) 649
PceI AGGCCT 1 cut(s) 675
PctI GAATGC 1 cut(s) 577
PdiI GCCGGC 1 cut(s) 738
PfeI GAWTC 3 cut(s) 190, 199, 701
PflMI CCANNNNNTGG 1 cut(s) 547
PluTI GGCGCC 1 cut(s) 437
Psp6I CCWGG 3 cut(s) 649, 670, 715
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 3 cut(s) 649, 670, 715
PspN4I GGNNCC 5 cut(s) 48, 435, 510, 829, 885
PspPI GGNCC 5 cut(s) 538, 647, 668, 713, 734
PstI CTGCAG 1 cut(s) 660
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 228, 762, 883
PvuII CAGCTG 1 cut(s) 1027
RseI CAYNNNNRTG 2 cut(s) 98, 339
SaqAI TTAA 2 cut(s) 581, 743
Sau3AI GATC 7 cut(s) 126, 160, 228, 352, 554, 762, 883
Sau96I GGNCC 5 cut(s) 538, 647, 668, 713, 734
ScrFI CCNGG 4 cut(s) 651, 672, 717, 969
SduI GDGCHC 1 cut(s) 139
SfaNI GCATC 3 cut(s) 64, 855, 898
SfcI CTRYAG 1 cut(s) 656
SfoI GGCGCC 1 cut(s) 435
SinI GGWCC 1 cut(s) 538
SmiMI CAYNNNNRTG 2 cut(s) 98, 339
Sse9I AATT 4 cut(s) 245, 439, 582, 620
SseBI AGGCCT 1 cut(s) 675
SspDI GGCGCC 1 cut(s) 433
SspMI CTAG 3 cut(s) 923, 977, 1045
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 4 cut(s) 649, 670, 715, 967
TaaI ACNGT 3 cut(s) 265, 529, 547
TaiI ACGT 1 cut(s) 27
TaqI TCGA 4 cut(s) 249, 363, 863, 914
TaqII GACCGA 1 cut(s) 392
TasI AATT 4 cut(s) 245, 439, 582, 620
TauI GCSGC 5 cut(s) 52, 241, 244, 461, 843
TfiI GAWTC 3 cut(s) 190, 199, 701
Tru1I TTAA 2 cut(s) 581, 743
Tru9I TTAA 2 cut(s) 581, 743
TscAI CASTG 8 cut(s) 144, 177, 387, 472, 552, 564, 582, 900
TseFI GTSAC 2 cut(s) 378, 523
TseI GCWGC 8 cut(s) 7, 52, 175, 655, 843, 878, 998, 1024
Tsp45I GTSAC 2 cut(s) 378, 523
TspDTI ATGAA 2 cut(s) 191, 898
TspGWI ACGGA 3 cut(s) 259, 383, 551
TspRI CASTG 8 cut(s) 144, 177, 387, 472, 552, 564, 582, 900
Van91I CCANNNNNTGG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 538
XapI RAATTY 1 cut(s) 439
XceI RCATGY 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 1039
XspI CTAG 3 cut(s) 923, 977, 1045
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.