Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 203 |
| AccB1I | GGYRCC | 1 cut(s) | 553 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 156 |
| AccBSI | CCGCTC | 1 cut(s) | 446 |
| AciI | CCGC | 4 cut(s) | 116, 367, 379, 446 |
| AclWI | GGATC | 5 cut(s) | 175, 455, 468, 469, 482 |
| AcsI | RAATTY | 2 cut(s) | 504, 521 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AcyI | GRCGYC | 1 cut(s) | 571 |
| AfaI | GTAC | 1 cut(s) | 243 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 156, 190, 217, 319, 471 |
| AgeI | ACCGGT | 1 cut(s) | 535 |
| AgsI | TTSAA | 1 cut(s) | 166 |
| AluBI | AGCT | 1 cut(s) | 624 |
| AluI | AGCT | 1 cut(s) | 624 |
| Alw21I | GWGCWC | 1 cut(s) | 605 |
| Alw26I | GTCTC | 1 cut(s) | 18 |
| AlwI | GGATC | 5 cut(s) | 175, 455, 468, 469, 482 |
| AoxI | GGCC | 3 cut(s) | 33, 94, 592 |
| ApeKI | GCWGC | 4 cut(s) | 5, 140, 325, 328 |
| ApoI | RAATTY | 2 cut(s) | 504, 521 |
| AsiGI | ACCGGT | 1 cut(s) | 535 |
| AspLEI | GCGC | 1 cut(s) | 325 |
| AspS9I | GGNCC | 2 cut(s) | 254, 592 |
| AsuHPI | GGTGA | 2 cut(s) | 241, 525 |
| AvaII | GGWCC | 1 cut(s) | 254 |
| BamHI | GGATCC | 2 cut(s) | 460, 474 |
| BanI | GGYRCC | 1 cut(s) | 553 |
| BbsI | GAAGAC | 1 cut(s) | 199 |
| Bbv12I | GWGCWC | 1 cut(s) | 605 |
| BbvI | GCAGC | 4 cut(s) | 17, 152, 312, 315 |
| BccI | CCATC | 2 cut(s) | 217, 293 |
| BceAI | ACGGC | 1 cut(s) | 336 |
| BclI | TGATCA | 1 cut(s) | 436 |
| BcoDI | GTCTC | 1 cut(s) | 18 |
| BfaI | CTAG | 1 cut(s) | 249 |
| BfoI | RGCGCY | 1 cut(s) | 326 |
| BisI | GCNGC | 4 cut(s) | 6, 141, 326, 329 |
| BlsI | GCNGC | 4 cut(s) | 7, 142, 327, 330 |
| Bme18I | GGWCC | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 2 cut(s) | 254, 592 |
| BmiI | GGNNCC | 5 cut(s) | 255, 462, 476, 555, 593 |
| BmsI | GCATC | 2 cut(s) | 52, 340 |
| BpiI | GAAGAC | 1 cut(s) | 199 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 589, 621 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BsaHI | GRCGYC | 1 cut(s) | 571 |
| BsaJI | CCNNGG | 3 cut(s) | 36, 257, 557 |
| BsaWI | WCCGGW | 1 cut(s) | 535 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 257, 287 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 156, 190, 217, 319, 471 |
| Bse118I | RCCGGY | 2 cut(s) | 535, 615 |
| Bse3DI | GCAATG | 1 cut(s) | 381 |
| BseDI | CCNNGG | 3 cut(s) | 36, 257, 557 |
| BseGI | GGATG | 2 cut(s) | 67, 496 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 156, 190, 217, 319, 471 |
| BseMI | GCAATG | 1 cut(s) | 381 |
| BseMII | CTCAG | 1 cut(s) | 443 |
| BseRI | GAGGAG | 3 cut(s) | 6, 44, 206 |
| BseXI | GCAGC | 4 cut(s) | 17, 152, 312, 315 |
| BseYI | CCCAGC | 1 cut(s) | 624 |
| BshFI | GGCC | 3 cut(s) | 35, 96, 594 |
| BshNI | GGYRCC | 1 cut(s) | 553 |
| BshTI | ACCGGT | 1 cut(s) | 535 |
| BsiHKAI | GWGCWC | 1 cut(s) | 605 |
| BsiSI | CCGG | 2 cut(s) | 536, 616 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 156, 190, 217, 319, 471 |
| BsmAI | GTCTC | 1 cut(s) | 18 |
| BsnI | GGCC | 3 cut(s) | 35, 96, 594 |
| Bsp1286I | GDGCHC | 1 cut(s) | 605 |
| Bsp143I | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| Bsp19I | CCATGG | 2 cut(s) | 36, 557 |
| BspACI | CCGC | 4 cut(s) | 116, 367, 379, 446 |
| BspANI | GGCC | 3 cut(s) | 35, 96, 594 |
| BspCNI | CTCAG | 1 cut(s) | 444 |
| BspLI | GGNNCC | 5 cut(s) | 255, 462, 476, 555, 593 |
| BspPI | GGATC | 5 cut(s) | 175, 455, 468, 469, 482 |
| BspT107I | GGYRCC | 1 cut(s) | 553 |
| BsrBI | CCGCTC | 1 cut(s) | 446 |
| BsrDI | GCAATG | 1 cut(s) | 381 |
| BsrFI | RCCGGY | 2 cut(s) | 535, 615 |
| BssAI | RCCGGY | 2 cut(s) | 535, 615 |
| BssECI | CCNNGG | 3 cut(s) | 36, 257, 557 |
| BssMI | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| BssNI | GRCGYC | 1 cut(s) | 571 |
| BssT1I | CCWWGG | 3 cut(s) | 36, 257, 557 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 553 |
| BstACI | GRCGYC | 1 cut(s) | 571 |
| BstC8I | GCNNGC | 1 cut(s) | 617 |
| BstDEI | CTNAG | 1 cut(s) | 452 |
| BstDSI | CCRYGG | 2 cut(s) | 36, 557 |
| BstF5I | GGATG | 2 cut(s) | 67, 496 |
| BstH2I | RGCGCY | 1 cut(s) | 326 |
| BstHHI | GCGC | 1 cut(s) | 325 |
| BstKTI | GATC | 5 cut(s) | 147, 183, 439, 463, 477 |
| BstMAI | GTCTC | 1 cut(s) | 18 |
| BstMBI | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 600, 621 |
| BstV1I | GCAGC | 4 cut(s) | 17, 152, 312, 315 |
| BstV2I | GAAGAC | 1 cut(s) | 199 |
| BstX2I | RGATCY | 2 cut(s) | 460, 474 |
| BstYI | RGATCY | 2 cut(s) | 460, 474 |
| BsuRI | GGCC | 3 cut(s) | 35, 96, 594 |
| BtgI | CCRYGG | 2 cut(s) | 36, 557 |
| BtsCI | GGATG | 2 cut(s) | 67, 496 |
| BtsI | GCAGTG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 3 cut(s) | 15, 20, 552 |
| Cac8I | GCNNGC | 1 cut(s) | 617 |
| CfoI | GCGC | 1 cut(s) | 325 |
| Cfr10I | RCCGGY | 2 cut(s) | 535, 615 |
| Cfr13I | GGNCC | 2 cut(s) | 254, 592 |
| CseI | GACGC | 1 cut(s) | 560 |
| Csp6I | GTAC | 1 cut(s) | 242 |
| CspAI | ACCGGT | 1 cut(s) | 535 |
| CviAII | CATG | 3 cut(s) | 37, 277, 558 |
| CviJI | RGCY | 8 cut(s) | 35, 96, 353, 392, 413, 563, 594, 624 |
| CviKI_1 | RGCY | 8 cut(s) | 35, 96, 353, 392, 413, 563, 594, 624 |
| CviQI | GTAC | 1 cut(s) | 242 |
| DdeI | CTNAG | 1 cut(s) | 452 |
| DpnI | GATC | 5 cut(s) | 146, 182, 438, 462, 476 |
| DpnII | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 203 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 203 |
| Eco130I | CCWWGG | 3 cut(s) | 36, 257, 557 |
| Eco47I | GGWCC | 1 cut(s) | 254 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| EcoO109I | RGGNCCY | 1 cut(s) | 254 |
| EcoT14I | CCWWGG | 3 cut(s) | 36, 257, 557 |
| ErhI | CCWWGG | 3 cut(s) | 36, 257, 557 |
| FaeI | CATG | 3 cut(s) | 40, 280, 561 |
| FaiI | YATR | 5 cut(s) | 38, 278, 297, 346, 559 |
| FatI | CATG | 3 cut(s) | 36, 276, 557 |
| FbaI | TGATCA | 1 cut(s) | 436 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 141, 326, 329 |
| FokI | GGATG | 2 cut(s) | 74, 503 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 141, 326, 329 |
| FspBI | CTAG | 1 cut(s) | 249 |
| GlaI | GCGC | 1 cut(s) | 324 |
| GluI | GCNGC | 4 cut(s) | 6, 141, 326, 329 |
| GsaI | CCCAGC | 1 cut(s) | 628 |
| HaeII | RGCGCY | 1 cut(s) | 326 |
| HaeIII | GGCC | 3 cut(s) | 35, 96, 594 |
| HapII | CCGG | 2 cut(s) | 536, 616 |
| HgaI | GACGC | 1 cut(s) | 560 |
| HhaI | GCGC | 1 cut(s) | 325 |
| Hin1I | GRCGYC | 1 cut(s) | 571 |
| Hin1II | CATG | 3 cut(s) | 40, 280, 561 |
| Hin6I | GCGC | 1 cut(s) | 323 |
| HinP1I | GCGC | 1 cut(s) | 323 |
| HinfI | GANTC | 3 cut(s) | 235, 303, 484 |
| HpaII | CCGG | 2 cut(s) | 536, 616 |
| HphI | GGTGA | 2 cut(s) | 241, 525 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 1 cut(s) | 407 |
| Hpy188III | TCNNGA | 2 cut(s) | 469, 488 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| Hpy99I | CGWCG | 1 cut(s) | 519 |
| HpyAV | CCTTC | 2 cut(s) | 106, 160 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 553 |
| HpyCH4V | TGCA | 2 cut(s) | 331, 374 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 600, 621 |
| HpyF3I | CTNAG | 1 cut(s) | 452 |
| Hsp92I | GRCGYC | 1 cut(s) | 571 |
| Hsp92II | CATG | 3 cut(s) | 40, 280, 561 |
| HspAI | GCGC | 1 cut(s) | 323 |
| KroI | GCCGGC | 1 cut(s) | 615 |
| KroNI | GCCGGC | 1 cut(s) | 617 |
| Ksp22I | TGATCA | 1 cut(s) | 436 |
| Kzo9I | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| LmnI | GCTCC | 1 cut(s) | 443 |
| LpnPI | CCDG | 9 cut(s) | 173, 473, 482, 484, 549, 608, 610, 616, 629 |
| Lsp1109I | GCAGC | 4 cut(s) | 17, 152, 312, 315 |
| LweI | GCATC | 2 cut(s) | 52, 340 |
| MaeI | CTAG | 1 cut(s) | 249 |
| MaeIII | GTNAC | 1 cut(s) | 547 |
| MalI | GATC | 5 cut(s) | 146, 182, 438, 462, 476 |
| MbiI | CCGCTC | 1 cut(s) | 446 |
| MboI | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| MboII | GAAGA | 2 cut(s) | 199, 244 |
| MflI | RGATCY | 2 cut(s) | 460, 474 |
| MhlI | GDGCHC | 1 cut(s) | 605 |
| MluCI | AATT | 3 cut(s) | 212, 504, 521 |
| MmeI | TCCRAC | 1 cut(s) | 208 |
| MroNI | GCCGGC | 1 cut(s) | 615 |
| MseI | TTAA | 2 cut(s) | 216, 396 |
| MspI | CCGG | 2 cut(s) | 536, 616 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 600, 621 |
| NaeI | GCCGGC | 1 cut(s) | 617 |
| NcoI | CCATGG | 2 cut(s) | 36, 557 |
| NdeII | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| NgoMIV | GCCGGC | 1 cut(s) | 615 |
| NlaIII | CATG | 3 cut(s) | 40, 280, 561 |
| NlaIV | GGNNCC | 5 cut(s) | 255, 462, 476, 555, 593 |
| NmeAIII | GCCGAG | 1 cut(s) | 116 |
| NmuCI | GTSAC | 1 cut(s) | 547 |
| PdiI | GCCGGC | 1 cut(s) | 617 |
| PfeI | GAWTC | 3 cut(s) | 235, 303, 484 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 156 |
| PinAI | ACCGGT | 1 cut(s) | 535 |
| PkrI | GCNGC | 4 cut(s) | 7, 142, 327, 330 |
| PpuMI | RGGWCCY | 1 cut(s) | 254 |
| Psp5II | RGGWCCY | 1 cut(s) | 254 |
| PspFI | CCCAGC | 1 cut(s) | 624 |
| PspN4I | GGNNCC | 5 cut(s) | 255, 462, 476, 555, 593 |
| PspPI | GGNCC | 2 cut(s) | 254, 592 |
| PspPPI | RGGWCCY | 1 cut(s) | 254 |
| PsuI | RGATCY | 2 cut(s) | 460, 474 |
| RsaI | GTAC | 1 cut(s) | 243 |
| RsaNI | GTAC | 1 cut(s) | 242 |
| SaqAI | TTAA | 2 cut(s) | 216, 396 |
| SatI | GCNGC | 4 cut(s) | 6, 141, 326, 329 |
| Sau3AI | GATC | 5 cut(s) | 144, 180, 436, 460, 474 |
| Sau96I | GGNCC | 2 cut(s) | 254, 592 |
| SduI | GDGCHC | 1 cut(s) | 605 |
| SetI | ASST | 7 cut(s) | 231, 345, 402, 584, 602, 613, 626 |
| SfaNI | GCATC | 2 cut(s) | 52, 340 |
| SinI | GGWCC | 1 cut(s) | 254 |
| SmlI | CTYRAG | 1 cut(s) | 338 |
| SmoI | CTYRAG | 1 cut(s) | 338 |
| Sse9I | AATT | 3 cut(s) | 212, 504, 521 |
| SsiI | CCGC | 4 cut(s) | 116, 367, 379, 446 |
| SspI | AATATT | 1 cut(s) | 154 |
| SspMI | CTAG | 1 cut(s) | 249 |
| StyI | CCWWGG | 3 cut(s) | 36, 257, 557 |
| TaaI | ACNGT | 2 cut(s) | 24, 553 |
| TaqI | TCGA | 1 cut(s) | 430 |
| TasI | AATT | 3 cut(s) | 212, 504, 521 |
| TfiI | GAWTC | 3 cut(s) | 235, 303, 484 |
| Tru1I | TTAA | 2 cut(s) | 216, 396 |
| Tru9I | TTAA | 2 cut(s) | 216, 396 |
| TscAI | CASTG | 3 cut(s) | 15, 27, 552 |
| TseFI | GTSAC | 1 cut(s) | 547 |
| TseI | GCWGC | 4 cut(s) | 5, 140, 325, 328 |
| Tsp45I | GTSAC | 1 cut(s) | 547 |
| TspGWI | ACGGA | 2 cut(s) | 467, 532 |
| TspRI | CASTG | 3 cut(s) | 15, 27, 552 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 156 |
| VpaK11BI | GGWCC | 1 cut(s) | 254 |
| XapI | RAATTY | 2 cut(s) | 504, 521 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 43, 115, 283 |
| XspI | CTAG | 1 cut(s) | 249 |