Rh6DG268300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000123
Physical Location & Seq
Forward (+)
46115382 .. 46118386
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG268300.1

Sequence Viewer

Length: 453 bp
ATGGATCGAGTTGCATTCCTCCAGCGTTGGTGGCTGTTGATGTGGTCGGAATTGAGTCGCCCGGCCTTATCCGAGGGGCTGCTGGAGGTTGGGCTGGGTCCGGAGGTCTGGATGGAGGACACTATGGCGACTGGGTCGGTGACGTCGGGATTTGCTGTGGAGCTTGAGGATGCCCTGGGATTTTCGGCGGGAAACCTAGATTTGAAGTTAGGGTTTCCTGTTGGGCAGGGTAGCAGCGGGTCTGAAGGGGAGGTTGGGATGACTTTGGGCCTGGGTGGTGAGTGTGTCGGCCTGATGAGTGTGGGCGGGCCAGCTGCACATGGGCCAGTTGCAAATGGGCCAGGGACTGATGTTGTTTACCCTAAAATTTTGGGGATGCACAAATGGTGCCATGTCCTCTGTGACTCTGCAAATTCCACCATCACCGCCACCTTGTCTGCCTCCTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.5

Weight (kDa)

4.42

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 387
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 4 cut(s) 188, 237, 306, 426
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 366, 412
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 3 cut(s) 174, 270, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 2 cut(s) 163, 314
AluI AGCT 2 cut(s) 163, 314
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 6 cut(s) 63, 268, 289, 308, 323, 338
ApeKI GCWGC 3 cut(s) 79, 234, 314
ApoI RAATTY 2 cut(s) 366, 412
AspS9I GGNCC 5 cut(s) 98, 268, 308, 323, 338
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 3 cut(s) 151, 290, 415
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 66, 246, 301
BccI CCATC 2 cut(s) 106, 428
BciT130I CCWGG 3 cut(s) 176, 272, 342
BcnI CCSGG 1 cut(s) 62
BfaI CTAG 1 cut(s) 197
BisI GCNGC 3 cut(s) 80, 235, 315
BlsI GCNGC 3 cut(s) 81, 236, 316
Bme1390I CCNGG 4 cut(s) 62, 176, 272, 342
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 5 cut(s) 98, 268, 308, 323, 338
BmiI GGNNCC 2 cut(s) 99, 389
BmrFI CCNGG 4 cut(s) 62, 176, 272, 342
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 160, 366
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 5, 104
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 5 cut(s) 72, 174, 175, 271, 341
BsaWI WCCGGW 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 136, 326
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 3 cut(s) 176, 272, 342
BseDI CCNNGG 5 cut(s) 72, 174, 175, 271, 341
BseGI GGATG 4 cut(s) 117, 175, 264, 381
BseNI ACTGG 2 cut(s) 136, 326
BseRI GAGGAG 1 cut(s) 433
BseXI GCAGC 3 cut(s) 66, 246, 301
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 300
BshFI GGCC 6 cut(s) 65, 270, 291, 310, 325, 340
BshNI GGYRCC 1 cut(s) 387
BsiSI CCGG 2 cut(s) 62, 101
BslFI GGGAC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 14
BsnI GGCC 6 cut(s) 65, 270, 291, 310, 325, 340
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 4 cut(s) 188, 237, 306, 426
BspANI GGCC 6 cut(s) 65, 270, 291, 310, 325, 340
BspEI TCCGGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 99, 389
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 387
BsrI ACTGG 2 cut(s) 136, 326
BssECI CCNNGG 5 cut(s) 72, 174, 175, 271, 341
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 176, 272, 342
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 308, 312
BstDEI CTNAG 1 cut(s) 445
BstF5I GGATG 4 cut(s) 117, 175, 264, 381
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 3 cut(s) 176, 272, 342
BstSCI CCNGG 4 cut(s) 60, 174, 270, 340
BstV1I GCAGC 3 cut(s) 66, 246, 301
BsuRI GGCC 6 cut(s) 65, 270, 291, 310, 325, 340
BtsCI GGATG 4 cut(s) 117, 175, 264, 381
Cac8I GCNNGC 2 cut(s) 308, 312
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 5 cut(s) 98, 268, 308, 323, 338
CviAII CATG 2 cut(s) 320, 392
DdeI CTNAG 1 cut(s) 445
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 174, 270, 340
FaeI CATG 2 cut(s) 323, 395
FaiI YATR 3 cut(s) 125, 321, 393
FaqI GGGAC 1 cut(s) 358
FatI CATG 2 cut(s) 319, 391
FauI CCCGC 3 cut(s) 181, 230, 299
Fnu4HI GCNGC 3 cut(s) 80, 235, 315
FokI GGATG 4 cut(s) 124, 182, 271, 388
Fsp4HI GCNGC 3 cut(s) 80, 235, 315
FspBI CTAG 1 cut(s) 197
GluI GCNGC 3 cut(s) 80, 235, 315
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 2 cut(s) 5, 104
HaeIII GGCC 6 cut(s) 65, 270, 291, 310, 325, 340
HapII CCGG 2 cut(s) 62, 101
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 2 cut(s) 323, 395
HinfI GANTC 2 cut(s) 55, 404
HpaII CCGG 2 cut(s) 62, 101
HphI GGTGA 3 cut(s) 151, 290, 415
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 49, 73, 244
Hpy188III TCNNGA 3 cut(s) 101, 109, 147
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 5 cut(s) 14, 317, 332, 379, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 445
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 2 cut(s) 323, 395
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 66, 246, 301
LweI GCATC 2 cut(s) 160, 366
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 139, 401
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MluCI AATT 3 cut(s) 50, 366, 412
MlyI GAGTC 2 cut(s) 64, 398
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 9 cut(s) 29, 67, 79, 97, 109, 160, 244, 407, 451
MroI TCCGGA 1 cut(s) 100
MseI TTAA 1 cut(s) 451
MspA1I CMGCKG 2 cut(s) 237, 314
MspI CCGG 2 cut(s) 62, 101
MspR9I CCNGG 4 cut(s) 62, 176, 272, 342
Mva1269I GAATGC 1 cut(s) 14
MvaI CCWGG 3 cut(s) 176, 272, 342
MwoI GCNNNNNNNGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 62
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 323, 395
NlaIV GGNNCC 2 cut(s) 99, 389
NmuCI GTSAC 2 cut(s) 139, 401
PasI CCCWGGG 1 cut(s) 175
PctI GAATGC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 3 cut(s) 81, 236, 316
PleI GAGTC 2 cut(s) 63, 398
PpsI GAGTC 2 cut(s) 63, 398
Psp6I CCWGG 3 cut(s) 174, 270, 340
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 3 cut(s) 174, 270, 340
PspN4I GGNNCC 2 cut(s) 99, 389
PspPI GGNCC 5 cut(s) 98, 268, 308, 323, 338
PstNI CAGNNNCTG 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 3 cut(s) 80, 235, 315
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 5 cut(s) 98, 268, 308, 323, 338
SchI GAGTC 2 cut(s) 64, 398
ScrFI CCNGG 4 cut(s) 62, 176, 272, 342
SetI ASST 8 cut(s) 90, 108, 146, 165, 198, 255, 316, 434
SfaNI GCATC 2 cut(s) 160, 366
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 50, 366, 412
SsiI CCGC 4 cut(s) 188, 237, 306, 426
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 60, 174, 270, 340
TaiI ACGT 1 cut(s) 146
TaqI TCGA 1 cut(s) 7
TasI AATT 3 cut(s) 50, 366, 412
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TseFI GTSAC 2 cut(s) 139, 401
TseI GCWGC 3 cut(s) 79, 234, 314
Tsp45I GTSAC 2 cut(s) 139, 401
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 366, 412
XspI CTAG 1 cut(s) 197
ZraI GACGTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.