Rmu_sc0001374.1_g000062

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001374.1
OG0000123
Physical Location & Seq
Reverse (-)
202615 .. 203865
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001374.1_g000062.1.cds

Sequence Viewer

Length: 1155 bp
atggctccttctacactgtcagaggaggccattgtgagccttgatggaggagaggatgctatccatgactcgtttttttatctctgtggtcggcttctatcgaagaaggtggtggtgatccggtcattctcggcggcgatctctaatgtttggggtttgaaggagagagtgttgattcggcaggaggaagatgatgtcttcatcttccaattcaaggaaagggaggtgaagaatcagattcttgctgggggcccatggttctataataattcaatgttgttgttagccgactactatggcatctctgcccttgaggtggcgccgctgcacctccttgaggtttgggtggtggtgaaaggattatgcattgctatgcgcaatgagaaagctttagccttgatcggcaaagcactcggaggattcgttcgggttgatcaaggggcagtgctgaggaaggattcggtttggcggattcgtgtggtgcaggacgtccggcggaggatctgggcgcaaaggatctgtgaattttcgtcggcggtctcggtgttgacactgccattggtggtgtcgggcccggagcagacgagtcaggcggtgctgggttcagcgtcgaggtcgccagtctctgtgccagcaaacgtcaggtctgtgatgtcctctaggctgtctgaggggaggccggaagttgctgggtcgaagggggtattggctggaacggcgtcaggggctgctgcagaaggtgcaacgatgactccgaaaaaatcggcgggaaacctagtagggttgaccgaggatttgattgggcatgggctaggtttggctgctggaactgatgggttggttgctcctgggcctatttctgctgggctgagttttactggattgggttttaggcaggatgctgggtttttttctcacaccaaattaggtgtacgcaagaagccatttaagcctagtttggcgatcattcctcgggaatttcaattgggtaagttggtggaggttccgatttctgtggggtcaggtccaaagaagaagggtcgtcctcctaggcgccgagctaagcgaaatccggtaaataaggaaaaagaaggtaatattataggtgaggatttaaactccatctcaaatgggaaggagttagctattgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

384

Amino Acids

41.13

Weight (kDa)

9.76

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 492
Acc16I TGCGCA 1 cut(s) 377
AccB1I GGYRCC 2 cut(s) 319, 1053
AciI CCGC 7 cut(s) 134, 323, 469, 496, 536, 593, 767
AclWI GGATC 3 cut(s) 112, 509, 524
AcsI RAATTY 2 cut(s) 524, 977
AcyI GRCGYC 4 cut(s) 320, 489, 719, 1054
AfaI GTAC 1 cut(s) 933
AfiI CCNNNNNNNGG 3 cut(s) 214, 316, 337
AgsI TTSAA 4 cut(s) 160, 214, 273, 983
AjnI CCWGG 1 cut(s) 847
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 3 cut(s) 389, 1061, 1145
AluI AGCT 3 cut(s) 389, 1061, 1145
Alw26I GTCTC 2 cut(s) 544, 628
AlwI GGATC 3 cut(s) 112, 509, 524
AlwNI CAGNNNCTG 2 cut(s) 626, 728
Ama87I CYCGRG 1 cut(s) 972
AoxI GGCC 5 cut(s) 27, 250, 571, 677, 851
ApaI GGGCCC 2 cut(s) 254, 575
ApeKI GCWGC 4 cut(s) 325, 728, 731, 821
ApoI RAATTY 2 cut(s) 524, 977
ArsI GACNNNNNNTTYG 4 cut(s) 629, 661, 778, 810
AspA2I CCTAGG 1 cut(s) 1049
AspLEI GCGC 4 cut(s) 322, 378, 511, 1056
AspS9I GGNCC 6 cut(s) 250, 251, 571, 572, 851, 1025
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 4 cut(s) 127, 238, 364, 1118
AvaI CYCGRG 1 cut(s) 972
AvaII GGWCC 1 cut(s) 1025
AvrII CCTAGG 1 cut(s) 1049
BaeGI GKGCMC 2 cut(s) 254, 575
BanI GGYRCC 2 cut(s) 319, 1053
BanII GRGCYC 2 cut(s) 254, 575
BbsI GAAGAC 1 cut(s) 190
BbvCI CCTCAGC 1 cut(s) 449
BbvI GCAGC 4 cut(s) 312, 715, 718, 808
BccI CCATC 3 cut(s) 38, 827, 1130
BceAI ACGGC 1 cut(s) 732
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 849
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 2 cut(s) 544, 628
BfaI CTAG 5 cut(s) 660, 776, 812, 954, 1050
BfmI CTRYAG 1 cut(s) 732
BfoI RGCGCY 2 cut(s) 323, 1057
BisI GCNGC 6 cut(s) 135, 323, 326, 729, 732, 822
BlnI CCTAGG 1 cut(s) 1049
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 6 cut(s) 136, 324, 327, 730, 733, 823
Bme1390I CCNGG 2 cut(s) 575, 849
Bme18I GGWCC 1 cut(s) 1025
BmeT110I CYCGRG 1 cut(s) 972
BmgT120I GGNCC 6 cut(s) 250, 251, 571, 572, 851, 1025
BmiI GGNNCC 7 cut(s) 6, 251, 252, 321, 573, 1005, 1055
BmrFI CCNGG 2 cut(s) 575, 849
BmsI GCATC 3 cut(s) 46, 309, 889
BpiI GAAGAC 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 449
Bpu1102I GCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 2 cut(s) 332, 356
BpuMI CCSGG 1 cut(s) 575
BsaHI GRCGYC 4 cut(s) 320, 489, 719, 1054
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 5 cut(s) 254, 789, 848, 971, 1049
BsaWI WCCGGW 2 cut(s) 120, 1072
BsaXI ACNNNNNCTCC 6 cut(s) 155, 185, 408, 438, 736, 766
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 316, 337
Bse1I ACTGG 2 cut(s) 620, 883
Bse3DI GCAATG 2 cut(s) 366, 385
BseBI CCWGG 1 cut(s) 849
BseDI CCNNGG 5 cut(s) 254, 789, 848, 971, 1049
BseGI GGATG 2 cut(s) 61, 904
BseLI CCNNNNNNNGG 3 cut(s) 214, 316, 337
BseMI GCAATG 2 cut(s) 366, 385
BseMII CTCAG 3 cut(s) 440, 660, 860
BseNI ACTGG 2 cut(s) 620, 883
BseRI GAGGAG 2 cut(s) 38, 63
BseSI GKGCMC 2 cut(s) 254, 575
BseXI GCAGC 4 cut(s) 312, 715, 718, 808
BseYI CCCAGC 5 cut(s) 245, 598, 689, 863, 902
BsgI GTGCAG 2 cut(s) 311, 503
BshFI GGCC 5 cut(s) 29, 252, 573, 679, 853
BshNI GGYRCC 2 cut(s) 319, 1053
BsiHKCI CYCGRG 1 cut(s) 972
BsiSI CCGG 5 cut(s) 121, 493, 575, 680, 1073
BslI CCNNNNNNNGG 3 cut(s) 214, 316, 337
BsmAI GTCTC 2 cut(s) 544, 628
BsnI GGCC 5 cut(s) 29, 252, 573, 679, 853
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 972
Bsp120I GGGCCC 2 cut(s) 250, 571
Bsp1286I GDGCHC 2 cut(s) 254, 575
Bsp143I GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
Bsp1720I GCTNAGC 1 cut(s) 1062
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 7 cut(s) 134, 323, 469, 496, 536, 593, 767
BspANI GGCC 5 cut(s) 29, 252, 573, 679, 853
BspCNI CTCAG 3 cut(s) 441, 661, 861
BspLI GGNNCC 7 cut(s) 6, 251, 252, 321, 573, 1005, 1055
BspMAI CTGCAG 1 cut(s) 736
BspPI GGATC 3 cut(s) 112, 509, 524
BspT107I GGYRCC 2 cut(s) 319, 1053
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 366, 385
BsrI ACTGG 2 cut(s) 620, 883
BssECI CCNNGG 5 cut(s) 254, 789, 848, 971, 1049
BssMI GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
BssNI GRCGYC 4 cut(s) 320, 489, 719, 1054
BssT1I CCWWGG 2 cut(s) 254, 1049
Bst2UI CCWGG 1 cut(s) 849
Bst4CI ACNGT 1 cut(s) 18
BstACI GRCGYC 4 cut(s) 320, 489, 719, 1054
BstAPI GCANNNNNTGC 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 4 cut(s) 449, 669, 869, 1062
BstDSI CCRYGG 1 cut(s) 254
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 61, 904
BstH2I RGCGCY 2 cut(s) 323, 1057
BstHHI GCGC 4 cut(s) 322, 378, 511, 1056
BstKTI GATC 7 cut(s) 120, 141, 402, 436, 504, 519, 966
BstMAI GTCTC 2 cut(s) 544, 628
BstMBI GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
BstMWI GCNNNNNNNGC 4 cut(s) 716, 725, 740, 949
BstNI CCWGG 1 cut(s) 849
BstSCI CCNGG 2 cut(s) 573, 847
BstSFI CTRYAG 1 cut(s) 732
BstSLI GKGCMC 2 cut(s) 254, 575
BstV1I GCAGC 4 cut(s) 312, 715, 718, 808
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 501, 516
BstYI RGATCY 2 cut(s) 501, 516
BsuRI GGCC 5 cut(s) 29, 252, 573, 679, 853
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 61, 904
BtsI GCAGTG 2 cut(s) 450, 551
BtsIMutI CAGTG 3 cut(s) 14, 450, 551
Cac8I GCNNGC 1 cut(s) 633
CaiI CAGNNNCTG 2 cut(s) 626, 728
CfoI GCGC 4 cut(s) 322, 378, 511, 1056
Cfr13I GGNCC 6 cut(s) 250, 251, 571, 572, 851, 1025
CseI GACGC 2 cut(s) 597, 708
Csp6I GTAC 1 cut(s) 932
CviAII CATG 3 cut(s) 65, 255, 806
CviQI GTAC 1 cut(s) 932
DdeI CTNAG 4 cut(s) 449, 669, 869, 1062
DinI GGCGCC 2 cut(s) 321, 1055
DpnI GATC 7 cut(s) 119, 140, 401, 435, 503, 518, 965
DpnII GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
DraI TTTAAA 1 cut(s) 1116
EciI GGCGGA 2 cut(s) 484, 511
Eco130I CCWWGG 2 cut(s) 254, 1049
Eco24I GRGCYC 2 cut(s) 254, 575
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 1025
Eco88I CYCGRG 1 cut(s) 972
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 847
EcoT14I CCWWGG 2 cut(s) 254, 1049
EcoT22I ATGCAT 1 cut(s) 368
EcoT38I GRGCYC 2 cut(s) 254, 575
EgeI GGCGCC 2 cut(s) 321, 1055
EheI GGCGCC 2 cut(s) 321, 1055
ErhI CCWWGG 2 cut(s) 254, 1049
FaeI CATG 3 cut(s) 68, 258, 809
FaiI YATR 8 cut(s) 66, 256, 264, 297, 364, 374, 807, 1103
FatI CATG 3 cut(s) 64, 254, 805
FauI CCCGC 1 cut(s) 760
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 6 cut(s) 135, 323, 326, 729, 732, 822
FokI GGATG 2 cut(s) 68, 911
FriOI GRGCYC 2 cut(s) 254, 575
Fsp4HI GCNGC 6 cut(s) 135, 323, 326, 729, 732, 822
FspBI CTAG 5 cut(s) 660, 776, 812, 954, 1050
FspI TGCGCA 1 cut(s) 377
GlaI GCGC 4 cut(s) 321, 377, 510, 1055
GluI GCNGC 6 cut(s) 135, 323, 326, 729, 732, 822
GsaI CCCAGC 5 cut(s) 249, 602, 693, 867, 906
HaeII RGCGCY 2 cut(s) 323, 1057
HaeIII GGCC 5 cut(s) 29, 252, 573, 679, 853
HapII CCGG 5 cut(s) 121, 493, 575, 680, 1073
HgaI GACGC 2 cut(s) 597, 708
HhaI GCGC 4 cut(s) 322, 378, 511, 1056
Hin1I GRCGYC 4 cut(s) 320, 489, 719, 1054
Hin1II CATG 3 cut(s) 68, 258, 809
Hin6I GCGC 4 cut(s) 320, 376, 509, 1054
HinP1I GCGC 4 cut(s) 320, 376, 509, 1054
HincII GTYRAC 2 cut(s) 549, 786
HindII GTYRAC 2 cut(s) 549, 786
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 9 cut(s) 68, 175, 232, 238, 420, 458, 472, 586, 751
HpaII CCGG 5 cut(s) 121, 493, 575, 680, 1073
HphI GGTGA 4 cut(s) 127, 238, 364, 1118
Hpy166II GTNNAC 3 cut(s) 549, 786, 932
Hpy188I TCNGA 6 cut(s) 22, 237, 416, 670, 756, 1008
Hpy188III TCNNGA 1 cut(s) 974
Hpy8I GTNNAC 3 cut(s) 549, 786, 932
Hpy99I CGWCG 2 cut(s) 535, 613
HpyAV CCTTC 9 cut(s) 18, 100, 154, 448, 691, 731, 1030, 1085, 1129
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 2 cut(s) 489, 639
HpyCH4V TGCA 5 cut(s) 328, 366, 484, 734, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 716, 725, 740, 949
HpyF3I CTNAG 4 cut(s) 449, 669, 869, 1062
HpySE526I ACGT 2 cut(s) 489, 639
Hsp92I GRCGYC 4 cut(s) 320, 489, 719, 1054
Hsp92II CATG 3 cut(s) 68, 258, 809
HspAI GCGC 4 cut(s) 320, 376, 509, 1054
KasI GGCGCC 2 cut(s) 319, 1053
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
LmnI GCTCC 3 cut(s) 10, 577, 850
Lsp1109I GCAGC 4 cut(s) 312, 715, 718, 808
LweI GCATC 3 cut(s) 46, 309, 889
MaeI CTAG 5 cut(s) 660, 776, 812, 954, 1050
MaeII ACGT 2 cut(s) 489, 639
MalI GATC 7 cut(s) 119, 140, 401, 435, 503, 518, 965
MboI GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
MboII GAAGA 6 cut(s) 115, 190, 196, 200, 241, 1045
MfeI CAATTG 1 cut(s) 983
MflI RGATCY 2 cut(s) 501, 516
MhlI GDGCHC 2 cut(s) 254, 575
MluCI AATT 6 cut(s) 209, 268, 524, 923, 977, 983
Mly113I GGCGCC 2 cut(s) 320, 1054
MlyI GAGTC 3 cut(s) 62, 595, 745
Mph1103I ATGCAT 1 cut(s) 368
MseI TTAA 3 cut(s) 948, 1115, 1153
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 5 cut(s) 121, 493, 575, 680, 1073
MspR9I CCNGG 2 cut(s) 575, 849
MunI CAATTG 1 cut(s) 983
MvaI CCWGG 1 cut(s) 849
MwoI GCNNNNNNNGC 4 cut(s) 716, 725, 740, 949
NarI GGCGCC 2 cut(s) 320, 1054
NciI CCSGG 1 cut(s) 575
NcoI CCATGG 1 cut(s) 254
NdeII GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
NlaIII CATG 3 cut(s) 68, 258, 809
NlaIV GGNNCC 7 cut(s) 6, 251, 252, 321, 573, 1005, 1055
NmeAIII GCCGAG 2 cut(s) 110, 1082
NsbI TGCGCA 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 368
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 752
PfeI GAWTC 6 cut(s) 175, 232, 238, 420, 458, 472
PkrI GCNGC 6 cut(s) 136, 324, 327, 730, 733, 823
PleI GAGTC 3 cut(s) 62, 594, 745
PluTI GGCGCC 2 cut(s) 323, 1057
PpsI GAGTC 3 cut(s) 62, 594, 745
Psp6I CCWGG 1 cut(s) 847
PspFI CCCAGC 5 cut(s) 245, 598, 689, 863, 902
PspGI CCWGG 1 cut(s) 847
PspN4I GGNNCC 7 cut(s) 6, 251, 252, 321, 573, 1005, 1055
PspOMI GGGCCC 2 cut(s) 250, 571
PspPI GGNCC 6 cut(s) 250, 251, 571, 572, 851, 1025
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 2 cut(s) 626, 728
PsuI RGATCY 2 cut(s) 501, 516
RsaI GTAC 1 cut(s) 933
RsaNI GTAC 1 cut(s) 932
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 3 cut(s) 948, 1115, 1153
SatI GCNGC 6 cut(s) 135, 323, 326, 729, 732, 822
Sau3AI GATC 7 cut(s) 117, 138, 399, 433, 501, 516, 963
Sau96I GGNCC 6 cut(s) 250, 251, 571, 572, 851, 1025
SchI GAGTC 3 cut(s) 62, 595, 745
ScrFI CCNGG 2 cut(s) 575, 849
SduI GDGCHC 2 cut(s) 254, 575
SfaNI GCATC 3 cut(s) 46, 309, 889
SfcI CTRYAG 1 cut(s) 732
SfoI GGCGCC 2 cut(s) 321, 1055
SinI GGWCC 1 cut(s) 1025
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 311, 335
SmoI CTYRAG 2 cut(s) 311, 335
Sse9I AATT 6 cut(s) 209, 268, 524, 923, 977, 983
SsiI CCGC 7 cut(s) 134, 323, 469, 496, 536, 593, 767
SspDI GGCGCC 2 cut(s) 319, 1053
SspI AATATT 1 cut(s) 1099
SspMI CTAG 5 cut(s) 660, 776, 812, 954, 1050
StyD4I CCNGG 2 cut(s) 573, 847
StyI CCWWGG 2 cut(s) 254, 1049
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 2 cut(s) 492, 642
TaqI TCGA 3 cut(s) 101, 611, 695
TaqII GACCGA 1 cut(s) 803
TasI AATT 6 cut(s) 209, 268, 524, 923, 977, 983
TauI GCSGC 2 cut(s) 137, 325
TfiI GAWTC 6 cut(s) 175, 232, 238, 420, 458, 472
Tru1I TTAA 3 cut(s) 948, 1115, 1153
Tru9I TTAA 3 cut(s) 948, 1115, 1153
TscAI CASTG 3 cut(s) 21, 450, 558
TseI GCWGC 4 cut(s) 325, 728, 731, 821
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 3 cut(s) 21, 450, 558
VpaK11BI GGWCC 1 cut(s) 1025
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 2 cut(s) 524, 977
XmaJI CCTAGG 1 cut(s) 1049
XspI CTAG 5 cut(s) 660, 776, 812, 954, 1050
ZraI GACGTC 1 cut(s) 490
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.