Rmu_sc0005424.1_g000023

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005424.1
OG0000123
Physical Location & Seq
Reverse (-)
135941 .. 145801
9861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005424.1_g000023.1.cds

Sequence Viewer

Length: 1335 bp
atggcggcggaggaggctatcgtgcacctagttgggggcgaggatgcaatccaagatccttttttctatgtatgtggccggttgctctcccaaaaacgggtgttgcttccgtcgttttcggcggctatttccggtatctggggtttgaaagagcgggttttgatccgtgaggaggaaggagggatctttgtctttcaattcaaggagcaggagacgaaggatcacgtcctcaacggcggtccttggttttttaacaattccatgcttctcttggcggactatgatggtctccgggatctgacagaggttccactgaattcactggaggtttgggtggcggtgaaaggtctgcgcgtggctatgcgcaatgcccgtgccctaaccttacttgggaactccttggggcgctttgtcaggtacaaccaaggtgcgttgcagaggaaggatccagtgcaaaggctccgggttgtgcacgacgtacgtcgccgtgtatgggctcgacgtaagtactcgttttcggcagcgatggcggtggacttagagttgaggtacgagaaatgccatggtatctgtcggggctgcggcttttttgaccacgggctgggttgctgtgacaatgccttgacggcggtcatggagtcaggagacgggtcgggctacactcctccagcgttggcaacaacgttggtggctgttgatgtggccggaattgagtcgcccggccggtctgaggggctgctggacgttgggctgggtacggagggctggacggaggaagctagggcgactgggtcggtgacgacgggacctgttgtggagccagcggctgccccgggattttcggcgggaaacctaggtttgaagttaggatttcctgttgggccgggtggcagcgggcctgaaggggaagttgggctgacttggggcctgggtggtgagtgtgacctgatgaaagagagtgtgggtgggccagctgcacaggggccagctgcacagggaccagctgtacatgggctagttgcaaatgggccaggaactgatgctgtttatcccaaaattttggggactcgcaaatggtgccatggttgggaggtgaaatcggatccgaatgggtcgaatagaattggccgcggatcggaggaaacgacggcgttttgggaagtggggccgccagggttttggcggaggatcggaggggaggttgagatttcagagcgaaataaaagagaagaggggaggaggaggaagaagaagaagattggggaccgattagagagagaaaaaagagtgactgaagaggcgttgttcgtttcagggatttataggaaaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

444

Amino Acids

48.06

Weight (kDa)

7.59

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 1077
AccB7I CCANNNNNTGG 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 2 cut(s) 354, 1131
AclI AACGTT 1 cut(s) 683
AcoI YGGCCR 4 cut(s) 76, 702, 721, 1126
AcsI RAATTY 2 cut(s) 316, 1056
AcuI CTGAAG 2 cut(s) 921, 1314
AfaI GTAC 6 cut(s) 419, 480, 509, 551, 757, 1008
AgsI TTSAA 4 cut(s) 148, 197, 202, 862
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 3 cut(s) 927, 1030, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 894, 926
AluBI AGCT 4 cut(s) 779, 974, 989, 1004
AluI AGCT 4 cut(s) 779, 974, 989, 1004
Alw21I GWGCWC 2 cut(s) 27, 474
Alw26I GTCTC 3 cut(s) 206, 293, 639
Alw44I GTGCAC 2 cut(s) 23, 470
AlwNI CAGNNNCTG 2 cut(s) 827, 1037
Ama87I CYCGRG 1 cut(s) 832
ApaLI GTGCAC 2 cut(s) 23, 470
ApeKI GCWGC 7 cut(s) 521, 579, 736, 827, 891, 974, 989
ApoI RAATTY 2 cut(s) 316, 1056
AspA2I CCTAGG 1 cut(s) 853
AspLEI GCGC 3 cut(s) 354, 366, 408
AsuC2I CCSGG 6 cut(s) 293, 464, 720, 833, 834, 885
AsuHPI GGTGA 4 cut(s) 352, 808, 947, 1105
AvaI CYCGRG 1 cut(s) 832
AvaII GGWCC 4 cut(s) 239, 806, 998, 1264
AvrII CCTAGG 1 cut(s) 853
BaeGI GKGCMC 3 cut(s) 27, 379, 474
BamHI GGATCC 2 cut(s) 445, 1102
BanI GGYRCC 1 cut(s) 1077
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 2 cut(s) 27, 474
BbvI GCAGC 7 cut(s) 533, 566, 723, 814, 903, 961, 976
BccI CCATC 2 cut(s) 278, 520
BceAI ACGGC 4 cut(s) 250, 471, 642, 1164
BciT130I CCWGG 3 cut(s) 929, 1032, 1173
BcnI CCSGG 6 cut(s) 293, 464, 720, 833, 834, 885
BcoDI GTCTC 3 cut(s) 206, 293, 639
BfaI CTAG 4 cut(s) 29, 780, 854, 1016
BfoI RGCGCY 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 626
BlnI CCTAGG 1 cut(s) 853
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 9 cut(s) 293, 464, 720, 833, 834, 885, 929, 1032, 1173
Bme18I GGWCC 4 cut(s) 239, 806, 998, 1264
BmeT110I CYCGRG 1 cut(s) 832
BmgBI CACGTC 1 cut(s) 226
BmrFI CCNGG 9 cut(s) 293, 464, 720, 833, 834, 885, 929, 1032, 1173
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 34, 1030
BmuI ACTGGG 1 cut(s) 798
BoxI GACNNNNGTC 2 cut(s) 480, 629
BpmI CTGGAG 2 cut(s) 344, 651
BpuMI CCSGG 6 cut(s) 293, 464, 720, 833, 834, 885
BsaI GGTCTC 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 1185, 1215
Bse118I RCCGGY 2 cut(s) 78, 723
Bse1I ACTGG 3 cut(s) 327, 449, 793
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 3 cut(s) 929, 1032, 1173
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 3 cut(s) 327, 449, 793
BseRI GAGGAG 5 cut(s) 26, 185, 654, 1252, 1255
BseSI GKGCMC 3 cut(s) 27, 379, 474
BseX3I CGGCCG 1 cut(s) 721
BseXI GCAGC 7 cut(s) 533, 566, 723, 814, 903, 961, 976
BseYI CCCAGC 2 cut(s) 601, 751
BsgI GTGCAG 2 cut(s) 960, 975
Bsh1236I CGCG 2 cut(s) 354, 1131
Bsh1285I CGRYCG 1 cut(s) 724
BshNI GGYRCC 1 cut(s) 1077
BsiEI CGRYCG 1 cut(s) 724
BsiHKAI GWGCWC 2 cut(s) 27, 474
BsiHKCI CYCGRG 1 cut(s) 832
BsiSI CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 833, 884
BsiWI CGTACG 1 cut(s) 478
BslFI GGGAC 4 cut(s) 819, 1011, 1078, 1277
BsmAI GTCTC 3 cut(s) 206, 293, 639
BsmBI CGTCTC 2 cut(s) 206, 639
BsmFI GGGAC 4 cut(s) 819, 1011, 1078, 1277
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 832
Bsp1286I GDGCHC 4 cut(s) 27, 379, 474, 499
Bsp1407I TGTACA 1 cut(s) 1006
Bsp143I GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
Bsp19I CCATGG 2 cut(s) 562, 1081
BspCNI CTCAG 1 cut(s) 721
BspFNI CGCG 2 cut(s) 354, 1131
BspT107I GGYRCC 1 cut(s) 1077
BspTNI GGTCTC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 2 cut(s) 78, 723
BsrGI TGTACA 1 cut(s) 1006
BsrI ACTGG 3 cut(s) 327, 449, 793
BssAI RCCGGY 2 cut(s) 78, 723
BssMI GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
BssT1I CCWWGG 6 cut(s) 242, 399, 424, 562, 853, 1081
Bst2UI CCWGG 3 cut(s) 929, 1032, 1173
Bst6I CTCTTC 2 cut(s) 1224, 1290
BstAPI GCANNNNNTGC 1 cut(s) 1077
BstAUI TGTACA 1 cut(s) 1006
BstC8I GCNNGC 4 cut(s) 822, 896, 972, 987
BstDEI CTNAG 3 cut(s) 538, 729, 1332
BstDSI CCRYGG 4 cut(s) 562, 595, 1081, 1129
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 2 cut(s) 354, 1131
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 3 cut(s) 354, 366, 408
BstKTI GATC 9 cut(s) 58, 165, 186, 223, 298, 448, 1105, 1136, 1191
BstMAI GTCTC 3 cut(s) 206, 293, 639
BstMBI GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
BstMCI CGRYCG 1 cut(s) 724
BstMWI GCNNNNNNNGC 4 cut(s) 14, 527, 626, 1077
BstNI CCWGG 3 cut(s) 929, 1032, 1173
BstPAI GACNNNNGTC 2 cut(s) 480, 629
BstSCI CCNGG 9 cut(s) 291, 462, 718, 831, 832, 883, 927, 1030, 1171
BstSLI GKGCMC 3 cut(s) 27, 379, 474
BstUI CGCG 2 cut(s) 354, 1131
BstV1I GCAGC 7 cut(s) 533, 566, 723, 814, 903, 961, 976
BstX2I RGATCY 5 cut(s) 55, 183, 295, 445, 1102
BstXI CCANNNNNNTGG 2 cut(s) 1060, 1179
BstYI RGATCY 5 cut(s) 55, 183, 295, 445, 1102
BstZI CGGCCG 1 cut(s) 721
BtgI CCRYGG 4 cut(s) 562, 595, 1081, 1129
BtgZI GCGATG 1 cut(s) 539
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 3 cut(s) 311, 320, 456
Cac8I GCNNGC 4 cut(s) 822, 896, 972, 987
CaiI CAGNNNCTG 2 cut(s) 827, 1037
CfoI GCGC 3 cut(s) 354, 366, 408
Cfr10I RCCGGY 2 cut(s) 78, 723
Cfr42I CCGCGG 1 cut(s) 1132
Cfr9I CCCGGG 1 cut(s) 832
Csp6I GTAC 6 cut(s) 418, 479, 508, 550, 756, 1007
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 5 cut(s) 262, 563, 634, 1010, 1082
CviQI GTAC 6 cut(s) 418, 479, 508, 550, 756, 1007
DdeI CTNAG 3 cut(s) 538, 729, 1332
DpnI GATC 9 cut(s) 57, 164, 185, 222, 297, 447, 1104, 1135, 1190
DpnII GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
EaeI YGGCCR 4 cut(s) 76, 702, 721, 1126
EagI CGGCCG 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 1224, 1290
EarI CTCTTC 2 cut(s) 1224, 1290
EciI GGCGGA 3 cut(s) 23, 290, 1198
EclXI CGGCCG 1 cut(s) 721
Eco130I CCWWGG 6 cut(s) 242, 399, 424, 562, 853, 1081
Eco24I GRGCYC 1 cut(s) 499
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 4 cut(s) 239, 806, 998, 1264
Eco52I CGGCCG 1 cut(s) 721
Eco57I CTGAAG 2 cut(s) 921, 1314
Eco88I CYCGRG 1 cut(s) 832
EcoO109I RGGNCCY 2 cut(s) 806, 925
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 927, 1030, 1171
EcoT14I CCWWGG 6 cut(s) 242, 399, 424, 562, 853, 1081
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 6 cut(s) 242, 399, 424, 562, 853, 1081
Esp3I CGTCTC 2 cut(s) 206, 639
FaeI CATG 5 cut(s) 265, 566, 637, 1013, 1085
FaqI GGGAC 4 cut(s) 819, 1011, 1078, 1277
FatI CATG 5 cut(s) 261, 562, 633, 1009, 1081
FauI CCCGC 3 cut(s) 147, 838, 887
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 4 cut(s) 29, 780, 854, 1016
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 3 cut(s) 353, 365, 407
GsaI CCCAGC 2 cut(s) 605, 755
GsuI CTGGAG 2 cut(s) 344, 651
HaeII RGCGCY 1 cut(s) 409
HapII CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 833, 884
HhaI GCGC 3 cut(s) 354, 366, 408
Hin1II CATG 5 cut(s) 265, 566, 637, 1013, 1085
Hin6I GCGC 3 cut(s) 352, 364, 406
HinP1I GCGC 3 cut(s) 352, 364, 406
HinfI GANTC 3 cut(s) 638, 713, 1066
HpaII CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 833, 884
HphI GGTGA 4 cut(s) 352, 808, 947, 1105
Hpy166II GTNNAC 3 cut(s) 25, 472, 535
Hpy188I TCNGA 7 cut(s) 300, 730, 1102, 1107, 1138, 1193, 1213
Hpy188III TCNNGA 1 cut(s) 642
Hpy8I GTNNAC 3 cut(s) 25, 472, 535
Hpy99I CGWCG 6 cut(s) 115, 479, 486, 504, 805, 1150
HpyAV CCTTC 4 cut(s) 170, 211, 436, 896
HpyCH4IV ACGT 6 cut(s) 225, 477, 481, 502, 683, 744
HpyCH4V TGCA 8 cut(s) 25, 47, 436, 454, 472, 977, 992, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 527, 626, 1077
HpyF3I CTNAG 3 cut(s) 538, 729, 1332
HpySE526I ACGT 6 cut(s) 225, 477, 481, 502, 683, 744
Hsp92II CATG 5 cut(s) 265, 566, 637, 1013, 1085
HspAI GCGC 3 cut(s) 352, 364, 406
KspI CCGCGG 1 cut(s) 1132
Kzo9I GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
LmnI GCTCC 3 cut(s) 205, 465, 817
Lsp1109I GCAGC 7 cut(s) 533, 566, 723, 814, 903, 961, 976
LweI GCATC 2 cut(s) 34, 1030
MaeI CTAG 4 cut(s) 29, 780, 854, 1016
MaeII ACGT 6 cut(s) 225, 477, 481, 502, 683, 744
MaeIII GTNAC 4 cut(s) 611, 796, 941, 1288
MalI GATC 9 cut(s) 57, 164, 185, 222, 297, 447, 1104, 1135, 1190
MbiI CCGCTC 1 cut(s) 154
MboI GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
MboII GAAGA 6 cut(s) 1241, 1258, 1261, 1264, 1267, 1307
MflI RGATCY 5 cut(s) 55, 183, 295, 445, 1102
MhlI GDGCHC 4 cut(s) 27, 379, 474, 499
MluCI AATT 6 cut(s) 197, 256, 316, 708, 1056, 1122
MlyI GAGTC 3 cut(s) 647, 722, 1060
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 6 cut(s) 824, 894, 974, 989, 1004, 1131
MspI CCGG 9 cut(s) 79, 132, 292, 463, 705, 720, 724, 833, 884
MspR9I CCNGG 9 cut(s) 293, 464, 720, 833, 834, 885, 929, 1032, 1173
MvaI CCWGG 3 cut(s) 929, 1032, 1173
MvnI CGCG 2 cut(s) 354, 1131
MwoI GCNNNNNNNGC 4 cut(s) 14, 527, 626, 1077
NciI CCSGG 6 cut(s) 293, 464, 720, 833, 834, 885
NcoI CCATGG 2 cut(s) 562, 1081
NdeII GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
NlaIII CATG 5 cut(s) 265, 566, 637, 1013, 1085
NmuCI GTSAC 4 cut(s) 611, 796, 941, 1288
NsbI TGCGCA 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 1142
Pfl23II CGTACG 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 790
PflMI CCANNNNNTGG 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 291
PleI GAGTC 3 cut(s) 646, 721, 1060
PpsI GAGTC 3 cut(s) 646, 721, 1060
PpuMI RGGWCCY 1 cut(s) 806
PshAI GACNNNNGTC 2 cut(s) 480, 629
Psp1406I AACGTT 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 3 cut(s) 927, 1030, 1171
PspFI CCCAGC 2 cut(s) 601, 751
PspGI CCWGG 3 cut(s) 927, 1030, 1171
PspLI CGTACG 1 cut(s) 478
PspPPI RGGWCCY 1 cut(s) 806
PstNI CAGNNNCTG 2 cut(s) 827, 1037
PsuI RGATCY 5 cut(s) 55, 183, 295, 445, 1102
PsyI GACNNNGTC 1 cut(s) 790
PvuII CAGCTG 3 cut(s) 974, 989, 1004
RsaI GTAC 6 cut(s) 419, 480, 509, 551, 757, 1008
RsaNI GTAC 6 cut(s) 418, 479, 508, 550, 756, 1007
SacII CCGCGG 1 cut(s) 1132
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 9 cut(s) 55, 162, 183, 220, 295, 445, 1102, 1133, 1188
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 3 cut(s) 647, 722, 1060
ScrFI CCNGG 9 cut(s) 293, 464, 720, 833, 834, 885, 929, 1032, 1173
SduI GDGCHC 4 cut(s) 27, 379, 474, 499
SfaNI GCATC 2 cut(s) 34, 1030
Sfr303I CCGCGG 1 cut(s) 1132
SgrBI CCGCGG 1 cut(s) 1132
SinI GGWCC 4 cut(s) 239, 806, 998, 1264
SmaI CCCGGG 1 cut(s) 834
Sse9I AATT 6 cut(s) 197, 256, 316, 708, 1056, 1122
SspMI CTAG 4 cut(s) 29, 780, 854, 1016
StyD4I CCNGG 9 cut(s) 291, 462, 718, 831, 832, 883, 927, 1030, 1171
StyI CCWWGG 6 cut(s) 242, 399, 424, 562, 853, 1081
TaiI ACGT 6 cut(s) 228, 480, 484, 505, 686, 747
TaqI TCGA 2 cut(s) 499, 1115
TaqII GACCGA 1 cut(s) 1281
TasI AATT 6 cut(s) 197, 256, 316, 708, 1056, 1122
TatI WGTACW 2 cut(s) 507, 1006
TauI GCSGC 6 cut(s) 8, 125, 585, 827, 1131, 1171
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 3 cut(s) 318, 327, 456
TseFI GTSAC 4 cut(s) 611, 796, 941, 1288
TseI GCWGC 7 cut(s) 521, 579, 736, 827, 891, 974, 989
Tsp45I GTSAC 4 cut(s) 611, 796, 941, 1288
TspDTI ATGAA 1 cut(s) 965
TspGWI ACGGA 4 cut(s) 99, 155, 773, 785
TspMI CCCGGG 1 cut(s) 832
TspRI CASTG 3 cut(s) 318, 327, 456
Tth111I GACNNNGTC 1 cut(s) 790
Van91I CCANNNNNTGG 1 cut(s) 601
VneI GTGCAC 2 cut(s) 23, 470
VpaK11BI GGWCC 4 cut(s) 239, 806, 998, 1264
XapI RAATTY 2 cut(s) 316, 1056
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XmaI CCCGGG 1 cut(s) 832
XmaJI CCTAGG 1 cut(s) 853
XspI CTAG 4 cut(s) 29, 780, 854, 1016
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.