Rmu_sc0000116.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000116.1
OG0000123
Physical Location & Seq
Reverse (-)
13576 .. 14892
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000116.1_g000002.1.cds

Sequence Viewer

Length: 840 bp
atgatggtggcggaggaggctatcgtgcacctagttgggggcgaggatgcaatccaagatccttttttctatgatacaaaggatcacttcctcaatggcaggccttggttctttaacaattccatgcttctcttgacgaattatgacgaaatccatgatcttgcagaggtatcgctgacttccatggaggtttggatggcagtgaaggttttgtgcatggccatgcgcaatggccgcgccctaactctacttgggaacgctttggggatctttgtgcgatatgatcaagcaacgttgcaaaggaaggatcatgtctgtgacggagcattgacggcggtaatggcatcgggttgggctttggaggcctcagtggtggtggctgacacggtcgaagacgggccgcccgaccgttctgaggtgctaccggcagtaggtcggagtttggagcctcagataaaagggactgcggtcgtcgggtcagcgccttgggcctggggttgggatggaattgatgttaggcctcttgggctaaggtggcagatgagttttggcgaatgcaaacggtgccagggtaagtggagcttggagaagcggttagagcctagcttggcggtaatacctcatgaatttcatcttgatgcacttgtagaggtcctagttactgttgggaagacttcgaagaagaagggtcgacctaggggtcgtcataaaaagcctaagtctcaggatggagagttggaaagtaagaagaccaatctgatgccgaggttgttggatgatgaagaacctgaggcaggtactaactccgaccccaaggggaaggataaagtgcatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

279

Amino Acids

30.94

Weight (kDa)

5.8

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 699
Acc16I TGCGCA 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 564
AccI GTMKAC 1 cut(s) 691
AccII CGCG 1 cut(s) 237
AciI CCGC 7 cut(s) 11, 235, 335, 401, 467, 592, 611
AclI AACGTT 1 cut(s) 293
AclWI GGATC 4 cut(s) 53, 90, 275, 315
AcoI YGGCCR 2 cut(s) 219, 232
AcsI RAATTY 1 cut(s) 626
AfaI GTAC 1 cut(s) 799
AfiI CCNNNNNNNGG 5 cut(s) 37, 415, 431, 498, 794
AjnI CCWGG 2 cut(s) 491, 567
AluBI AGCT 2 cut(s) 582, 606
AluI AGCT 2 cut(s) 582, 606
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 726
Alw44I GTGCAC 1 cut(s) 26
AlwI GGATC 4 cut(s) 53, 90, 275, 315
AoxI GGCC 7 cut(s) 101, 219, 232, 363, 398, 489, 518
ApaLI GTGCAC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 626
AspA2I CCTAGG 1 cut(s) 695
AspLEI GCGC 3 cut(s) 228, 239, 484
AspS9I GGNCC 3 cut(s) 398, 489, 652
AsuII TTCGAA 1 cut(s) 677
AvaII GGWCC 1 cut(s) 652
AvrII CCTAGG 1 cut(s) 695
AxyI CCTNAGG 1 cut(s) 789
BaeGI GKGCMC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 221
BanI GGYRCC 1 cut(s) 564
BbsI GAAGAC 3 cut(s) 399, 677, 755
Bbv12I GWGCWC 1 cut(s) 30
BccI CCATC 3 cut(s) 190, 497, 722
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 2 cut(s) 493, 569
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 4 cut(s) 32, 603, 656, 696
BfoI RGCGCY 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 785
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 2 cut(s) 235, 401
BlnI CCTAGG 1 cut(s) 695
BlsI GCNGC 2 cut(s) 236, 402
Bme1390I CCNGG 2 cut(s) 493, 569
Bme18I GGWCC 1 cut(s) 652
BmgT120I GGNCC 3 cut(s) 398, 489, 652
BmiI GGNNCC 2 cut(s) 447, 566
BmrFI CCNGG 2 cut(s) 493, 569
BmsI GCATC 4 cut(s) 37, 353, 628, 750
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 3 cut(s) 399, 677, 755
Bpu10I CCTNAGC 1 cut(s) 530
Bpu14I TTCGAA 1 cut(s) 677
BsaJI CCNNGG 8 cut(s) 104, 183, 485, 492, 568, 695, 764, 813
BsaXI ACNNNNNCTCC 2 cut(s) 578, 608
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 415, 431, 498, 794
Bse118I RCCGGY 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 789
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 493, 569
BseDI CCNNGG 8 cut(s) 104, 183, 485, 492, 568, 695, 764, 813
BseGI GGATG 5 cut(s) 52, 201, 508, 733, 781
BseLI CCNNNNNNNGG 5 cut(s) 37, 415, 431, 498, 794
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 5 cut(s) 381, 405, 464, 737, 780
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 3 cut(s) 390, 409, 471
BshFI GGCC 7 cut(s) 103, 221, 234, 365, 400, 491, 520
BshNI GGYRCC 1 cut(s) 564
BsiEI CGRYCG 3 cut(s) 390, 409, 471
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 5 cut(s) 37, 415, 431, 498, 794
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 560
BsnI GGCC 7 cut(s) 103, 221, 234, 365, 400, 491, 520
Bsp119I TTCGAA 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 6 cut(s) 58, 82, 157, 267, 283, 307
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 7 cut(s) 11, 235, 335, 401, 467, 592, 611
BspANI GGCC 7 cut(s) 103, 221, 234, 365, 400, 491, 520
BspCNI CTCAG 5 cut(s) 380, 406, 463, 736, 781
BspFNI CGCG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 447, 566
BspMI ACCTGC 1 cut(s) 785
BspPI GGATC 4 cut(s) 53, 90, 275, 315
BspT104I TTCGAA 1 cut(s) 677
BspT107I GGYRCC 1 cut(s) 564
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 8 cut(s) 104, 183, 485, 492, 568, 695, 764, 813
BssMI GATC 6 cut(s) 58, 82, 157, 267, 283, 307
BssT1I CCWWGG 5 cut(s) 104, 183, 485, 695, 813
Bst2UI CCWGG 2 cut(s) 493, 569
Bst4CI ACNGT 4 cut(s) 388, 410, 564, 664
BstAPI GCANNNNNTGC 1 cut(s) 564
BstBI TTCGAA 1 cut(s) 677
BstC8I GCNNGC 2 cut(s) 101, 834
BstDEI CTNAG 8 cut(s) 367, 414, 450, 530, 717, 723, 789, 837
BstDSI CCRYGG 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 792
BstF5I GGATG 5 cut(s) 52, 201, 508, 733, 781
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 3 cut(s) 228, 239, 484
BstKTI GATC 6 cut(s) 61, 85, 160, 270, 286, 310
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 6 cut(s) 58, 82, 157, 267, 283, 307
BstMCI CGRYCG 3 cut(s) 390, 409, 471
BstNI CCWGG 2 cut(s) 493, 569
BstNSI RCATGY 1 cut(s) 836
BstPAI GACNNNNGTC 1 cut(s) 467
BstSCI CCNGG 2 cut(s) 491, 567
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 1 cut(s) 237
BstV2I GAAGAC 3 cut(s) 399, 677, 755
BstX2I RGATCY 2 cut(s) 58, 267
BstYI RGATCY 2 cut(s) 58, 267
Bsu36I CCTNAGG 1 cut(s) 789
BsuRI GGCC 7 cut(s) 103, 221, 234, 365, 400, 491, 520
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 5 cut(s) 52, 201, 508, 733, 781
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 375
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 2 cut(s) 101, 834
CciI TCATGA 1 cut(s) 622
CfoI GCGC 3 cut(s) 228, 239, 484
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 3 cut(s) 398, 489, 652
Csp6I GTAC 1 cut(s) 798
CviAII CATG 8 cut(s) 124, 155, 184, 217, 223, 311, 623, 833
CviQI GTAC 1 cut(s) 798
DdeI CTNAG 8 cut(s) 367, 414, 450, 530, 717, 723, 789, 837
DpnI GATC 6 cut(s) 60, 84, 159, 269, 285, 309
DpnII GATC 6 cut(s) 58, 82, 157, 267, 283, 307
DrdI GACNNNNNNGTC 1 cut(s) 699
DseDI GACNNNNNNGTC 1 cut(s) 699
EaeI YGGCCR 2 cut(s) 219, 232
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 5 cut(s) 104, 183, 485, 695, 813
Eco147I AGGCCT 3 cut(s) 103, 365, 520
Eco47I GGWCC 1 cut(s) 652
Eco81I CCTNAGG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 792
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 491, 567
EcoT14I CCWWGG 5 cut(s) 104, 183, 485, 695, 813
ErhI CCWWGG 5 cut(s) 104, 183, 485, 695, 813
FaeI CATG 8 cut(s) 127, 158, 187, 220, 226, 314, 626, 836
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 566, 598
FaqI GGGAC 1 cut(s) 475
FatI CATG 8 cut(s) 123, 154, 183, 216, 222, 310, 622, 832
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 1 cut(s) 691
Fnu4HI GCNGC 2 cut(s) 235, 401
FokI GGATG 5 cut(s) 59, 208, 515, 740, 788
Fsp4HI GCNGC 2 cut(s) 235, 401
FspBI CTAG 4 cut(s) 32, 603, 656, 696
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 3 cut(s) 227, 238, 483
GluI GCNGC 2 cut(s) 235, 401
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 7 cut(s) 103, 221, 234, 365, 400, 491, 520
HapII CCGG 1 cut(s) 425
HhaI GCGC 3 cut(s) 228, 239, 484
Hin1II CATG 8 cut(s) 127, 158, 187, 220, 226, 314, 626, 836
Hin6I GCGC 3 cut(s) 226, 237, 482
HinP1I GCGC 3 cut(s) 226, 237, 482
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HpaII CCGG 1 cut(s) 425
Hpy166II GTNNAC 2 cut(s) 28, 692
Hpy188I TCNGA 5 cut(s) 415, 438, 453, 759, 808
Hpy188III TCNNGA 4 cut(s) 133, 623, 635, 725
Hpy8I GTNNAC 2 cut(s) 28, 692
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 4 cut(s) 199, 298, 679, 814
HpyCH4III ACNGT 4 cut(s) 388, 410, 564, 664
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 8 cut(s) 28, 50, 164, 216, 298, 558, 641, 832
HpyF3I CTNAG 8 cut(s) 367, 414, 450, 530, 717, 723, 789, 837
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 8 cut(s) 127, 158, 187, 220, 226, 314, 626, 836
HspAI GCGC 3 cut(s) 226, 237, 482
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 6 cut(s) 58, 82, 157, 267, 283, 307
LmnI GCTCC 3 cut(s) 323, 445, 579
LpnPI CCDG 9 cut(s) 85, 438, 478, 505, 554, 581, 710, 780, 801
LweI GCATC 4 cut(s) 37, 353, 628, 750
MaeI CTAG 4 cut(s) 32, 603, 656, 696
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 317, 658
MalI GATC 6 cut(s) 60, 84, 159, 269, 285, 309
MboI GATC 6 cut(s) 58, 82, 157, 267, 283, 307
MboII GAAGA 6 cut(s) 404, 682, 691, 694, 760, 794
MflI RGATCY 2 cut(s) 58, 267
MhlI GDGCHC 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 4 cut(s) 118, 139, 507, 626
MluNI TGGCCA 1 cut(s) 221
MmeI TCCRAC 4 cut(s) 416, 717, 753, 831
Mox20I TGGCCA 1 cut(s) 221
MscI TGGCCA 1 cut(s) 221
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 3 cut(s) 221, 315, 636
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 493, 569
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 2 cut(s) 493, 569
MvnI CGCG 1 cut(s) 237
NcoI CCATGG 1 cut(s) 183
NdeII GATC 6 cut(s) 58, 82, 157, 267, 283, 307
NlaIII CATG 8 cut(s) 127, 158, 187, 220, 226, 314, 626, 836
NlaIV GGNNCC 2 cut(s) 447, 566
NmeAIII GCCGAG 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 317
NsbI TGCGCA 1 cut(s) 227
NspI RCATGY 1 cut(s) 836
NspV TTCGAA 1 cut(s) 677
PaeI GCATGC 1 cut(s) 836
PagI TCATGA 1 cut(s) 622
PceI AGGCCT 3 cut(s) 103, 365, 520
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 560
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 236, 402
PpuMI RGGWCCY 1 cut(s) 652
PshAI GACNNNNGTC 1 cut(s) 467
Psp1406I AACGTT 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 491, 567
PspGI CCWGG 2 cut(s) 491, 567
PspN4I GGNNCC 2 cut(s) 447, 566
PspPI GGNCC 3 cut(s) 398, 489, 652
PspPPI RGGWCCY 1 cut(s) 652
PsuI RGATCY 2 cut(s) 58, 267
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 1 cut(s) 799
RsaNI GTAC 1 cut(s) 798
RseI CAYNNNNRTG 3 cut(s) 221, 315, 636
SalI GTCGAC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 235, 401
Sau3AI GATC 6 cut(s) 58, 82, 157, 267, 283, 307
Sau96I GGNCC 3 cut(s) 398, 489, 652
ScrFI CCNGG 2 cut(s) 493, 569
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 4 cut(s) 37, 353, 628, 750
SfuI TTCGAA 1 cut(s) 677
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 3 cut(s) 221, 315, 636
SphI GCATGC 1 cut(s) 836
Sse9I AATT 4 cut(s) 118, 139, 507, 626
SseBI AGGCCT 3 cut(s) 103, 365, 520
SsiI CCGC 7 cut(s) 11, 235, 335, 401, 467, 592, 611
SspMI CTAG 4 cut(s) 32, 603, 656, 696
StuI AGGCCT 3 cut(s) 103, 365, 520
StyD4I CCNGG 2 cut(s) 491, 567
StyI CCWWGG 5 cut(s) 104, 183, 485, 695, 813
TaaI ACNGT 4 cut(s) 388, 410, 564, 664
TaiI ACGT 1 cut(s) 296
TaqI TCGA 3 cut(s) 390, 677, 691
TasI AATT 4 cut(s) 118, 139, 507, 626
TauI GCSGC 2 cut(s) 237, 403
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 207, 375
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 620, 639, 795
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 207, 375
Tth111I GACNNNGTC 1 cut(s) 386
VneI GTGCAC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 652
XagI CCTNNNNNAGG 1 cut(s) 792
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 836
XmaJI CCTAGG 1 cut(s) 695
XmiI GTMKAC 1 cut(s) 691
XspI CTAG 4 cut(s) 32, 603, 656, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.