Rmu_sc0023180.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023180.1
OG0000123
Physical Location & Seq
Forward (+)
8635 .. 9834
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023180.1_g000002.1.cds

Sequence Viewer

Length: 1200 bp
atggcggcggaagatgggacgaggactcttgccttatcggatgcggccgtagtgagcctggttgggggcggagatttgatccacgaccctttcttttacctctgcagccttttgcttaccaagaaaccggtgatcattcagtcgttttcggaggcgatttccgggatatggctgttgaaggagagggttctgattcgtgaggaggagggggggatcttcgtgttccaattcaaggaacatgaggtgaaatatcgggttcttcatggtggcccttggtactacagtaagtcgatgctattgttggctgcttacgacggggctagcactctgtcggagacccctatgcatttcttggaggtttgggtggctgtgaagggtctgagagtttccatgcgcaatgatccggctttaacccggattggcaacgttttaggaacttttgttagggctgaccaaattgcgttacggaggaaggatgtggtccagctaatccatgacgttcgcctacgagtctgggctaggcgtgagttttgcttctcgccggaatggacggtggtgcttgagttccagtatgaaaagtgtcatggcatatgtaaaggatgcggcttcttcactcatgccggaaaggactgcgacaaaggtttgctgctaggggacgccgagatagttgcggagatgtctccgtttggagctactatgccgacaacttcacctgggttaaaggaggtcgtggtttctgggtctgtggtgccggagtttggagatggaccggttgcaggcatggctgtgcaggtggaggcagaactgggttcggtgctccccttggctccttcgagttcctcggtgggaaaccctgattatgaattagggttgactgttgggtctgggttgaccaaggaaagggccagtgggccgtctgttgggctatttgggtctgagggttgtggtctgttttcgtttggacacccatctaaagtattgggtgtgcgacaacttcgtgaggaggattgggtcgaggacaggaaacgcatgaagcttgctgatggcttagttgaggttcctattactgatgggaagattccgaagaagaaaggtaggccctgtggtcataggaataaacctaagcctgcacctactttggatgtaatgggcccggttgaggaggtcatggagaaggacaccctatcccaagagggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

399

Amino Acids

43.46

Weight (kDa)

5.92

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 781
AasI GACNNNNNNGTC 1 cut(s) 880
Acc16I TGCGCA 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 748
AciI CCGC 6 cut(s) 5, 8, 44, 69, 603, 671
AclI AACGTT 1 cut(s) 426
AclWI GGATC 3 cut(s) 73, 221, 395
AcoI YGGCCR 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 8 cut(s) 64, 168, 232, 758, 776, 900, 920, 1159
AgeI ACCGGT 2 cut(s) 127, 769
AgsI TTSAA 2 cut(s) 178, 232
AjnI CCWGG 2 cut(s) 57, 712
AluBI AGCT 3 cut(s) 487, 692, 1036
AluI AGCT 3 cut(s) 487, 692, 1036
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 2 cut(s) 329, 684
AlwI GGATC 3 cut(s) 73, 221, 395
AoxI GGCC 6 cut(s) 45, 268, 903, 911, 1097, 1150
ApaI GGGCCC 1 cut(s) 1154
ApeKI GCWGC 3 cut(s) 105, 305, 646
AsiGI ACCGGT 2 cut(s) 127, 769
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 8 cut(s) 269, 481, 767, 903, 911, 1098, 1150, 1151
AsuC2I CCSGG 3 cut(s) 163, 415, 1154
AsuHPI GGTGA 3 cut(s) 142, 256, 702
AsuNHI GCTAGC 1 cut(s) 320
AvaII GGWCC 2 cut(s) 481, 767
BaeGI GKGCMC 1 cut(s) 1154
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 1154
Bbv12I GWGCWC 1 cut(s) 819
BbvI GCAGC 3 cut(s) 117, 292, 633
BccI CCATC 5 cut(s) 8, 758, 976, 1037, 1064
BceAI ACGGC 2 cut(s) 32, 898
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 2 cut(s) 59, 714
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 3 cut(s) 163, 415, 1154
BcoDI GTCTC 2 cut(s) 329, 684
BfaI CTAG 3 cut(s) 321, 519, 650
BfmI CTRYAG 2 cut(s) 103, 280
BfuAI ACCTGC 1 cut(s) 781
BisI GCNGC 6 cut(s) 6, 45, 106, 306, 604, 647
BlsI GCNGC 6 cut(s) 7, 46, 107, 307, 605, 648
Bme1390I CCNGG 5 cut(s) 59, 163, 415, 714, 1154
Bme18I GGWCC 2 cut(s) 481, 767
BmgT120I GGNCC 8 cut(s) 269, 481, 767, 903, 911, 1098, 1150, 1151
BmiI GGNNCC 4 cut(s) 750, 828, 1059, 1152
BmrFI CCNGG 5 cut(s) 59, 163, 415, 714, 1154
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 3 cut(s) 31, 282, 590
BmtI GCTAGC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 815
Bpu10I CCTNAGC 1 cut(s) 1122
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 3 cut(s) 163, 415, 1154
BsaHI GRCGYC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 5 cut(s) 272, 713, 822, 840, 894
BsaWI WCCGGW 2 cut(s) 127, 769
Bsc4I CCNNNNNNNGG 8 cut(s) 64, 168, 232, 758, 776, 900, 920, 1159
Bse118I RCCGGY 2 cut(s) 127, 769
Bse1I ACTGG 3 cut(s) 568, 810, 906
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 59, 714
BseDI CCNNGG 5 cut(s) 272, 713, 822, 840, 894
BseGI GGATG 4 cut(s) 46, 481, 605, 1147
BseLI CCNNNNNNNGG 8 cut(s) 64, 168, 232, 758, 776, 900, 920, 1159
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 371, 927
BseNI ACTGG 3 cut(s) 568, 810, 906
BseRI GAGGAG 4 cut(s) 215, 218, 1016, 1175
BseSI GKGCMC 1 cut(s) 1154
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 3 cut(s) 117, 292, 633
BsgI GTGCAG 2 cut(s) 809, 1113
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 6 cut(s) 47, 270, 905, 913, 1099, 1152
BshNI GGYRCC 1 cut(s) 748
BshTI ACCGGT 2 cut(s) 127, 769
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 819
BsiSI CCGG 9 cut(s) 128, 162, 404, 415, 542, 621, 752, 770, 1154
BslFI GGGAC 2 cut(s) 31, 668
BslI CCNNNNNNNGG 8 cut(s) 64, 168, 232, 758, 776, 900, 920, 1159
BsmAI GTCTC 2 cut(s) 329, 684
BsmFI GGGAC 2 cut(s) 31, 668
BsnI GGCC 6 cut(s) 47, 270, 905, 913, 1099, 1152
Bso31I GGTCTC 1 cut(s) 329
Bsp120I GGGCCC 1 cut(s) 1150
Bsp1286I GDGCHC 2 cut(s) 819, 1154
Bsp143I GATC 4 cut(s) 78, 132, 213, 400
BspACI CCGC 6 cut(s) 5, 8, 44, 69, 603, 671
BspANI GGCC 6 cut(s) 47, 270, 905, 913, 1099, 1152
BspCNI CTCAG 2 cut(s) 372, 928
BspLI GGNNCC 4 cut(s) 750, 828, 1059, 1152
BspMAI CTGCAG 1 cut(s) 107
BspMI ACCTGC 1 cut(s) 781
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 73, 221, 395
BspT107I GGYRCC 1 cut(s) 748
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 403
BsrFI RCCGGY 2 cut(s) 127, 769
BsrI ACTGG 3 cut(s) 568, 810, 906
BssAI RCCGGY 2 cut(s) 127, 769
BssECI CCNNGG 5 cut(s) 272, 713, 822, 840, 894
BssMI GATC 4 cut(s) 78, 132, 213, 400
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 3 cut(s) 272, 822, 894
Bst2UI CCWGG 2 cut(s) 59, 714
Bst4CI ACNGT 3 cut(s) 284, 553, 877
BstACI GRCGYC 1 cut(s) 657
BstC8I GCNNGC 4 cut(s) 322, 778, 1038, 1128
BstDEI CTNAG 4 cut(s) 380, 936, 1048, 1122
BstF5I GGATG 4 cut(s) 46, 481, 605, 1147
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 81, 135, 216, 403
BstMAI GTCTC 2 cut(s) 329, 684
BstMBI GATC 4 cut(s) 78, 132, 213, 400
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 782
BstNI CCWGG 2 cut(s) 59, 714
BstSCI CCNGG 5 cut(s) 57, 161, 413, 712, 1152
BstSFI CTRYAG 2 cut(s) 103, 280
BstSLI GKGCMC 1 cut(s) 1154
BstV1I GCAGC 3 cut(s) 117, 292, 633
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 6 cut(s) 47, 270, 905, 913, 1099, 1152
BtsCI GGATG 4 cut(s) 46, 481, 605, 1147
BtsIMutI CAGTG 1 cut(s) 913
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 4 cut(s) 322, 778, 1038, 1128
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 2 cut(s) 127, 769
Cfr13I GGNCC 8 cut(s) 269, 481, 767, 903, 911, 1098, 1150, 1151
CseI GACGC 1 cut(s) 665
Csp6I GTAC 1 cut(s) 277
CspAI ACCGGT 2 cut(s) 127, 769
CviAII CATG 9 cut(s) 239, 263, 391, 494, 584, 617, 781, 1030, 1168
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 4 cut(s) 380, 936, 1048, 1122
DpnI GATC 4 cut(s) 80, 134, 215, 402
DpnII GATC 4 cut(s) 78, 132, 213, 400
DrdI GACNNNNNNGTC 1 cut(s) 880
DseDI GACNNNNNNGTC 1 cut(s) 880
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EciI GGCGGA 2 cut(s) 23, 84
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 3 cut(s) 272, 822, 894
Eco24I GRGCYC 1 cut(s) 1154
Eco31I GGTCTC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 481, 767
Eco52I CGGCCG 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 1098
EcoRII CCWGG 2 cut(s) 57, 712
EcoT14I CCWWGG 3 cut(s) 272, 822, 894
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 1154
ErhI CCWWGG 3 cut(s) 272, 822, 894
FaeI CATG 9 cut(s) 242, 266, 394, 497, 587, 620, 784, 1033, 1171
FaqI GGGAC 2 cut(s) 31, 668
FatI CATG 9 cut(s) 238, 262, 390, 493, 583, 616, 780, 1029, 1167
FauNDI CATATG 1 cut(s) 590
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 6 cut(s) 6, 45, 106, 306, 604, 647
FokI GGATG 4 cut(s) 53, 488, 612, 1154
FriOI GRGCYC 1 cut(s) 1154
Fsp4HI GCNGC 6 cut(s) 6, 45, 106, 306, 604, 647
FspBI CTAG 3 cut(s) 321, 519, 650
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 1 cut(s) 395
GluI GCNGC 6 cut(s) 6, 45, 106, 306, 604, 647
HaeIII GGCC 6 cut(s) 47, 270, 905, 913, 1099, 1152
HapII CCGG 9 cut(s) 128, 162, 404, 415, 542, 621, 752, 770, 1154
HgaI GACGC 1 cut(s) 665
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 9 cut(s) 242, 266, 394, 497, 587, 620, 784, 1033, 1171
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 2 cut(s) 873, 891
HindII GTYRAC 2 cut(s) 873, 891
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 4 cut(s) 25, 193, 510, 1078
HpaII CCGG 9 cut(s) 128, 162, 404, 415, 542, 621, 752, 770, 1154
HphI GGTGA 3 cut(s) 142, 256, 702
Hpy166II GTNNAC 2 cut(s) 873, 891
Hpy188I TCNGA 7 cut(s) 40, 151, 192, 334, 381, 937, 1083
Hpy188III TCNNGA 2 cut(s) 197, 998
Hpy8I GTNNAC 2 cut(s) 873, 891
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 5 cut(s) 172, 367, 466, 840, 1168
HpyCH4III ACNGT 3 cut(s) 284, 553, 877
HpyCH4IV ACGT 2 cut(s) 426, 498
HpyCH4V TGCA 5 cut(s) 105, 346, 776, 790, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 782
HpyF3I CTNAG 4 cut(s) 380, 936, 1048, 1122
HpySE526I ACGT 2 cut(s) 426, 498
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 9 cut(s) 242, 266, 394, 497, 587, 620, 784, 1033, 1171
HspAI GCGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 4 cut(s) 78, 132, 213, 400
LmnI GCTCC 3 cut(s) 689, 822, 832
Lsp1109I GCAGC 3 cut(s) 117, 292, 633
LweI GCATC 3 cut(s) 31, 282, 590
MaeI CTAG 3 cut(s) 321, 519, 650
MaeII ACGT 2 cut(s) 426, 498
MaeIII GTNAC 1 cut(s) 462
MalI GATC 4 cut(s) 80, 134, 215, 402
MboI GATC 4 cut(s) 78, 132, 213, 400
MboII GAAGA 7 cut(s) 23, 208, 251, 601, 1087, 1096, 1099
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 819, 1154
MluCI AATT 3 cut(s) 227, 456, 863
MlyI GAGTC 2 cut(s) 19, 519
MmeI TCCRAC 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 2 cut(s) 410, 719
MslI CAYNNNNRTG 1 cut(s) 785
MspI CCGG 9 cut(s) 128, 162, 404, 415, 542, 621, 752, 770, 1154
MspR9I CCNGG 5 cut(s) 59, 163, 415, 714, 1154
MvaI CCWGG 2 cut(s) 59, 714
MwoI GCNNNNNNNGC 1 cut(s) 782
NciI CCSGG 3 cut(s) 163, 415, 1154
NdeI CATATG 1 cut(s) 590
NdeII GATC 4 cut(s) 78, 132, 213, 400
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 9 cut(s) 242, 266, 394, 497, 587, 620, 784, 1033, 1171
NlaIV GGNNCC 4 cut(s) 750, 828, 1059, 1152
NmeAIII GCCGAG 1 cut(s) 685
NsbI TGCGCA 1 cut(s) 395
NsiI ATGCAT 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 781
PfeI GAWTC 2 cut(s) 193, 1078
PfoI TCCNGGA 1 cut(s) 161
PinAI ACCGGT 2 cut(s) 127, 769
PkrI GCNGC 6 cut(s) 7, 46, 107, 307, 605, 648
PleI GAGTC 2 cut(s) 19, 518
PpsI GAGTC 2 cut(s) 19, 518
Psp1406I AACGTT 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 57, 712
PspGI CCWGG 2 cut(s) 57, 712
PspN4I GGNNCC 4 cut(s) 750, 828, 1059, 1152
PspOMI GGGCCC 1 cut(s) 1150
PspPI GGNCC 8 cut(s) 269, 481, 767, 903, 911, 1098, 1150, 1151
PstI CTGCAG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 2 cut(s) 410, 719
SatI GCNGC 6 cut(s) 6, 45, 106, 306, 604, 647
Sau3AI GATC 4 cut(s) 78, 132, 213, 400
Sau96I GGNCC 8 cut(s) 269, 481, 767, 903, 911, 1098, 1150, 1151
SchI GAGTC 2 cut(s) 19, 519
ScrFI CCNGG 5 cut(s) 59, 163, 415, 714, 1154
SduI GDGCHC 2 cut(s) 819, 1154
SfaNI GCATC 3 cut(s) 31, 282, 590
SfcI CTRYAG 2 cut(s) 103, 280
SinI GGWCC 2 cut(s) 481, 767
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 3 cut(s) 227, 456, 863
SsiI CCGC 6 cut(s) 5, 8, 44, 69, 603, 671
SspMI CTAG 3 cut(s) 321, 519, 650
StyD4I CCNGG 5 cut(s) 57, 161, 413, 712, 1152
StyI CCWWGG 3 cut(s) 272, 822, 894
TaaI ACNGT 3 cut(s) 284, 553, 877
TaiI ACGT 2 cut(s) 429, 501
TaqI TCGA 3 cut(s) 290, 833, 1014
TasI AATT 3 cut(s) 227, 456, 863
TauI GCSGC 3 cut(s) 8, 47, 606
TfiI GAWTC 2 cut(s) 193, 1078
Tru1I TTAA 2 cut(s) 410, 719
Tru9I TTAA 2 cut(s) 410, 719
TscAI CASTG 1 cut(s) 913
TseI GCWGC 3 cut(s) 105, 305, 646
TspDTI ATGAA 4 cut(s) 251, 588, 876, 1046
TspGWI ACGGA 2 cut(s) 481, 672
TspRI CASTG 1 cut(s) 913
VpaK11BI GGWCC 2 cut(s) 481, 767
XspI CTAG 3 cut(s) 321, 519, 650
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.