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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 170 |
| AccB1I | GGYRCC | 1 cut(s) | 417 |
| AciI | CCGC | 2 cut(s) | 191, 261 |
| AclI | AACGTT | 1 cut(s) | 50 |
| AcoI | YGGCCR | 1 cut(s) | 88 |
| AcsI | RAATTY | 1 cut(s) | 396 |
| AcyI | GRCGYC | 1 cut(s) | 167 |
| AfaI | GTAC | 1 cut(s) | 348 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 97 |
| AgsI | TTSAA | 1 cut(s) | 229 |
| AjnI | CCWGG | 2 cut(s) | 294, 370 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 261, 293 |
| AluBI | AGCT | 3 cut(s) | 146, 187, 344 |
| AluI | AGCT | 3 cut(s) | 146, 187, 344 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| Ama87I | CYCGRG | 1 cut(s) | 199 |
| AoxI | GGCC | 6 cut(s) | 88, 248, 263, 292, 338, 368 |
| ApeKI | GCWGC | 3 cut(s) | 103, 194, 258 |
| ApoI | RAATTY | 1 cut(s) | 396 |
| AspA2I | CCTAGG | 1 cut(s) | 220 |
| AspS9I | GGNCC | 5 cut(s) | 248, 263, 292, 338, 368 |
| AsuC2I | CCSGG | 4 cut(s) | 87, 200, 201, 252 |
| AsuHPI | GGTGA | 2 cut(s) | 175, 314 |
| AsuNHI | GCTAGC | 1 cut(s) | 187 |
| AvaI | CYCGRG | 1 cut(s) | 199 |
| AvrII | CCTAGG | 1 cut(s) | 220 |
| BanI | GGYRCC | 1 cut(s) | 417 |
| BbvI | GCAGC | 3 cut(s) | 90, 181, 270 |
| BccI | CCATC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 2 cut(s) | 296, 372 |
| BcnI | CCSGG | 4 cut(s) | 87, 200, 201, 252 |
| BfaI | CTAG | 4 cut(s) | 147, 188, 221, 356 |
| BglII | AGATCT | 1 cut(s) | 173 |
| BisI | GCNGC | 4 cut(s) | 104, 192, 195, 259 |
| BlnI | CCTAGG | 1 cut(s) | 220 |
| BlsI | GCNGC | 4 cut(s) | 105, 193, 196, 260 |
| Bme1390I | CCNGG | 6 cut(s) | 87, 200, 201, 252, 296, 372 |
| BmeT110I | CYCGRG | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 5 cut(s) | 248, 263, 292, 338, 368 |
| BmiI | GGNNCC | 1 cut(s) | 419 |
| BmrFI | CCNGG | 6 cut(s) | 87, 200, 201, 252, 296, 372 |
| BmrI | ACTGGG | 1 cut(s) | 165 |
| BmsI | GCATC | 1 cut(s) | 370 |
| BmtI | GCTAGC | 1 cut(s) | 191 |
| BmuI | ACTGGG | 1 cut(s) | 165 |
| BpmI | CTGGAG | 2 cut(s) | 18, 146 |
| BpuMI | CCSGG | 4 cut(s) | 87, 200, 201, 252 |
| BsaHI | GRCGYC | 1 cut(s) | 167 |
| BsaJI | CCNNGG | 6 cut(s) | 198, 199, 220, 295, 371, 421 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 97 |
| Bse1I | ACTGG | 2 cut(s) | 91, 160 |
| BseBI | CCWGG | 2 cut(s) | 296, 372 |
| BseDI | CCNNGG | 6 cut(s) | 198, 199, 220, 295, 371, 421 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 2 cut(s) | 91, 160 |
| BseRI | GAGGAG | 1 cut(s) | 21 |
| BseXI | GCAGC | 3 cut(s) | 90, 181, 270 |
| BseYI | CCCAGC | 1 cut(s) | 118 |
| BshFI | GGCC | 6 cut(s) | 90, 250, 265, 294, 340, 370 |
| BshNI | GGYRCC | 1 cut(s) | 417 |
| BsiHKCI | CYCGRG | 1 cut(s) | 199 |
| BsiSI | CCGG | 3 cut(s) | 87, 200, 251 |
| BslFI | GGGAC | 2 cut(s) | 388, 418 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 97 |
| BsmFI | GGGAC | 2 cut(s) | 388, 418 |
| BsnI | GGCC | 6 cut(s) | 90, 250, 265, 294, 340, 370 |
| BsoBI | CYCGRG | 1 cut(s) | 199 |
| Bsp1407I | TGTACA | 1 cut(s) | 346 |
| Bsp143I | GATC | 1 cut(s) | 173 |
| Bsp19I | CCATGG | 1 cut(s) | 421 |
| BspACI | CCGC | 2 cut(s) | 191, 261 |
| BspANI | GGCC | 6 cut(s) | 90, 250, 265, 294, 340, 370 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 1 cut(s) | 419 |
| BspOI | GCTAGC | 1 cut(s) | 191 |
| BspT107I | GGYRCC | 1 cut(s) | 417 |
| BsrGI | TGTACA | 1 cut(s) | 346 |
| BsrI | ACTGG | 2 cut(s) | 91, 160 |
| BssECI | CCNNGG | 6 cut(s) | 198, 199, 220, 295, 371, 421 |
| BssMI | GATC | 1 cut(s) | 173 |
| BssNI | GRCGYC | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 2 cut(s) | 220, 421 |
| Bst2UI | CCWGG | 2 cut(s) | 296, 372 |
| BstACI | GRCGYC | 1 cut(s) | 167 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 417 |
| BstAUI | TGTACA | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 3 cut(s) | 189, 263, 342 |
| BstDEI | CTNAG | 1 cut(s) | 96 |
| BstDSI | CCRYGG | 1 cut(s) | 421 |
| BstKTI | GATC | 1 cut(s) | 176 |
| BstMBI | GATC | 1 cut(s) | 173 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 417 |
| BstNI | CCWGG | 2 cut(s) | 296, 372 |
| BstSCI | CCNGG | 6 cut(s) | 85, 198, 199, 250, 294, 370 |
| BstV1I | GCAGC | 3 cut(s) | 90, 181, 270 |
| BstX2I | RGATCY | 1 cut(s) | 173 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 400 |
| BstYI | RGATCY | 1 cut(s) | 173 |
| BsuRI | GGCC | 6 cut(s) | 90, 250, 265, 294, 340, 370 |
| BtgI | CCRYGG | 1 cut(s) | 421 |
| Cac8I | GCNNGC | 3 cut(s) | 189, 263, 342 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| Cfr13I | GGNCC | 5 cut(s) | 248, 263, 292, 338, 368 |
| Cfr9I | CCCGGG | 1 cut(s) | 199 |
| Csp6I | GTAC | 1 cut(s) | 347 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 36, 71 |
| CviAII | CATG | 2 cut(s) | 350, 422 |
| CviQI | GTAC | 1 cut(s) | 347 |
| DdeI | CTNAG | 1 cut(s) | 96 |
| DpnI | GATC | 1 cut(s) | 175 |
| DpnII | GATC | 1 cut(s) | 173 |
| EaeI | YGGCCR | 1 cut(s) | 88 |
| Eco130I | CCWWGG | 2 cut(s) | 220, 421 |
| Eco88I | CYCGRG | 1 cut(s) | 199 |
| EcoRII | CCWGG | 2 cut(s) | 294, 370 |
| EcoT14I | CCWWGG | 2 cut(s) | 220, 421 |
| ErhI | CCWWGG | 2 cut(s) | 220, 421 |
| FaeI | CATG | 2 cut(s) | 353, 425 |
| FaiI | YATR | 3 cut(s) | 351, 423, 430 |
| FaqI | GGGAC | 2 cut(s) | 388, 418 |
| FatI | CATG | 2 cut(s) | 349, 421 |
| FauI | CCCGC | 1 cut(s) | 254 |
| Fnu4HI | GCNGC | 4 cut(s) | 104, 192, 195, 259 |
| Fsp4HI | GCNGC | 4 cut(s) | 104, 192, 195, 259 |
| FspBI | CTAG | 4 cut(s) | 147, 188, 221, 356 |
| GluI | GCNGC | 4 cut(s) | 104, 192, 195, 259 |
| GsaI | CCCAGC | 1 cut(s) | 122 |
| GsuI | CTGGAG | 2 cut(s) | 18, 146 |
| HaeIII | GGCC | 6 cut(s) | 90, 250, 265, 294, 340, 370 |
| HapII | CCGG | 3 cut(s) | 87, 200, 251 |
| Hin1I | GRCGYC | 1 cut(s) | 167 |
| Hin1II | CATG | 2 cut(s) | 353, 425 |
| HinfI | GANTC | 3 cut(s) | 5, 80, 406 |
| HpaII | CCGG | 3 cut(s) | 87, 200, 251 |
| HphI | GGTGA | 2 cut(s) | 175, 314 |
| Hpy188I | TCNGA | 1 cut(s) | 97 |
| Hpy188III | TCNNGA | 3 cut(s) | 9, 125, 171 |
| Hpy99I | CGWCG | 1 cut(s) | 172 |
| HpyCH4IV | ACGT | 3 cut(s) | 50, 111, 167 |
| HpyCH4V | TGCA | 1 cut(s) | 362 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 417 |
| HpyF3I | CTNAG | 1 cut(s) | 96 |
| HpySE526I | ACGT | 3 cut(s) | 50, 111, 167 |
| Hsp92I | GRCGYC | 1 cut(s) | 167 |
| Hsp92II | CATG | 2 cut(s) | 353, 425 |
| Kzo9I | GATC | 1 cut(s) | 173 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| Lsp1109I | GCAGC | 3 cut(s) | 90, 181, 270 |
| LweI | GCATC | 1 cut(s) | 370 |
| MaeI | CTAG | 4 cut(s) | 147, 188, 221, 356 |
| MaeII | ACGT | 3 cut(s) | 50, 111, 167 |
| MaeIII | GTNAC | 2 cut(s) | 163, 308 |
| MalI | GATC | 1 cut(s) | 175 |
| MboI | GATC | 1 cut(s) | 173 |
| MflI | RGATCY | 1 cut(s) | 173 |
| MluCI | AATT | 1 cut(s) | 396 |
| MlyI | GAGTC | 3 cut(s) | 14, 89, 400 |
| MmeI | TCCRAC | 1 cut(s) | 113 |
| MnlI | CCTC | 5 cut(s) | 42, 91, 121, 133, 268 |
| MspA1I | CMGCKG | 2 cut(s) | 261, 344 |
| MspI | CCGG | 3 cut(s) | 87, 200, 251 |
| MspR9I | CCNGG | 6 cut(s) | 87, 200, 201, 252, 296, 372 |
| MvaI | CCWGG | 2 cut(s) | 296, 372 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 417 |
| NciI | CCSGG | 4 cut(s) | 87, 200, 201, 252 |
| NcoI | CCATGG | 1 cut(s) | 421 |
| NdeII | GATC | 1 cut(s) | 173 |
| NheI | GCTAGC | 1 cut(s) | 187 |
| NlaIII | CATG | 2 cut(s) | 353, 425 |
| NlaIV | GGNNCC | 1 cut(s) | 419 |
| NmuCI | GTSAC | 2 cut(s) | 163, 308 |
| PkrI | GCNGC | 4 cut(s) | 105, 193, 196, 260 |
| PleI | GAGTC | 3 cut(s) | 13, 88, 400 |
| PpsI | GAGTC | 3 cut(s) | 13, 88, 400 |
| Psp1406I | AACGTT | 1 cut(s) | 50 |
| Psp6I | CCWGG | 2 cut(s) | 294, 370 |
| PspFI | CCCAGC | 1 cut(s) | 118 |
| PspGI | CCWGG | 2 cut(s) | 294, 370 |
| PspN4I | GGNNCC | 1 cut(s) | 419 |
| PspPI | GGNCC | 5 cut(s) | 248, 263, 292, 338, 368 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| PsuI | RGATCY | 1 cut(s) | 173 |
| PvuII | CAGCTG | 1 cut(s) | 344 |
| RsaI | GTAC | 1 cut(s) | 348 |
| RsaNI | GTAC | 1 cut(s) | 347 |
| SatI | GCNGC | 4 cut(s) | 104, 192, 195, 259 |
| Sau3AI | GATC | 1 cut(s) | 173 |
| Sau96I | GGNCC | 5 cut(s) | 248, 263, 292, 338, 368 |
| SchI | GAGTC | 3 cut(s) | 14, 89, 400 |
| ScrFI | CCNGG | 6 cut(s) | 87, 200, 201, 252, 296, 372 |
| SfaNI | GCATC | 1 cut(s) | 370 |
| SmaI | CCCGGG | 1 cut(s) | 201 |
| Sse9I | AATT | 1 cut(s) | 396 |
| SsiI | CCGC | 2 cut(s) | 191, 261 |
| SspMI | CTAG | 4 cut(s) | 147, 188, 221, 356 |
| StyD4I | CCNGG | 6 cut(s) | 85, 198, 199, 250, 294, 370 |
| StyI | CCWWGG | 2 cut(s) | 220, 421 |
| TaiI | ACGT | 3 cut(s) | 53, 114, 170 |
| TaqI | TCGA | 1 cut(s) | 170 |
| TasI | AATT | 1 cut(s) | 396 |
| TatI | WGTACW | 1 cut(s) | 346 |
| TauI | GCSGC | 1 cut(s) | 194 |
| TseFI | GTSAC | 2 cut(s) | 163, 308 |
| TseI | GCWGC | 3 cut(s) | 103, 194, 258 |
| Tsp45I | GTSAC | 2 cut(s) | 163, 308 |
| TspDTI | ATGAA | 1 cut(s) | 335 |
| TspGWI | ACGGA | 1 cut(s) | 152 |
| TspMI | CCCGGG | 1 cut(s) | 199 |
| XapI | RAATTY | 1 cut(s) | 396 |
| XmaI | CCCGGG | 1 cut(s) | 199 |
| XmaJI | CCTAGG | 1 cut(s) | 220 |
| XspI | CTAG | 4 cut(s) | 147, 188, 221, 356 |
| ZraI | GACGTC | 1 cut(s) | 168 |