Rmu_ssc0000432.1_g000006

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000432.1
OG0000123
Physical Location & Seq
Forward (+)
18875 .. 20188
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000432.1_g000006.1.cds

Sequence Viewer

Length: 1239 bp
atgtttgtggtcgattgctttctcagaaacaggtgttgctttcgtttttcggcagcgatctccggtatttggggtctgaaagagcgcgttctgatccatgaagagggagaaggggtatttgttttccagttcaaggagcaggaggtgaaggatcatgttctcaacggtggaccgtggttcttcaacaactccaatcttctcttggcgaattatgacagaatccgagatctggcagaggttccgttgaattccatggcggtttggatggcggtgaaagggttacgcatggctatgcgcaatgatcattccctaaccctacttgggaatgccttgaggctctttgtaaggtatgatctaggggcattgcaaaggaaagaccctgtgcaacgaatcctgattgtgcacgacgtacgccgccgcatatgggctcgacatacatactctttctcggtgttaatggtggtggatttggaactgaggtatgagaaatgtcatggtatcttccggggatgtgatttttttgtgcatgggacgggtggctgtgatggggtattgacggcgttgatggagggaatgggtacagcgttggttacaaggcaggtggaggccgaagtggtcgaagataggcagaccggtcaacctgtggtgttgtgggtggccggccagggtctgaactggatggatgagggactggcatctgggctcgggtcggctgctgggaagctcgtgactgggaacgcagctcttggtttcttagcaggaaaccctaattcaaaattagggttccctactgggccgggggctaacgctggactggggctcaatgatgaggggctgctggagattgggtcggatgctacactagtgaggcctgagggcctagtggggactggtgggcctacatctcctattgtagatgggcctgatgctgcaagaagcacaattttgggggtgcgtaaatggtgtcaaggtgaatggagcttggagaagcgactaaagcctagcttggcggtgatacctcatgaatttcatttgggtgaacttgtagaggtccttgttactcttgggaagactccgaagaagaagggtttccctaggggtcgtaagaacaagcccaaggttcatgatggacaattggaaagtaggaggaccaacctaatgccaaggttgttggatgctgaagactctgaggcaggtactagctccgatcccaaggggaaggagcaaatatttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

412

Amino Acids

45.22

Weight (kDa)

8.13

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 589
Acc16I TGCGCA 1 cut(s) 296
Acc36I ACCTGC 2 cut(s) 589, 1184
AccII CGCG 1 cut(s) 87
AciI CCGC 5 cut(s) 257, 269, 415, 418, 1010
AclWI GGATC 3 cut(s) 88, 159, 1202
AcoI YGGCCR 2 cut(s) 657, 661
AcsI RAATTY 2 cut(s) 247, 1025
AcuI CTGAAG 1 cut(s) 1200
AfaI GTAC 3 cut(s) 411, 580, 1198
AfiI CCNNNNNNNGG 6 cut(s) 69, 103, 133, 229, 321, 424
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 4 cut(s) 133, 184, 247, 774
AhlI ACTAGT 1 cut(s) 862
AjnI CCWGG 1 cut(s) 663
AluBI AGCT 5 cut(s) 724, 743, 981, 1005, 1203
AluI AGCT 5 cut(s) 724, 743, 981, 1005, 1203
Alw21I GWGCWC 1 cut(s) 405
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 3 cut(s) 88, 159, 1202
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 8 cut(s) 606, 657, 661, 794, 869, 877, 896, 920
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 5 cut(s) 53, 713, 740, 835, 929
ApoI RAATTY 2 cut(s) 247, 1025
AsiGI ACCGGT 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 1088
AspA2I CCTAGG 1 cut(s) 1094
AspLEI GCGC 2 cut(s) 87, 297
AspS9I GGNCC 7 cut(s) 170, 794, 877, 896, 920, 1051, 1149
AsuC2I CCSGG 2 cut(s) 506, 798
AsuHPI GGTGA 5 cut(s) 157, 283, 983, 1024, 1049
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 3 cut(s) 170, 1051, 1149
AvrII CCTAGG 1 cut(s) 1094
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 1 cut(s) 405
BanII GRGCYC 3 cut(s) 430, 705, 822
BauI CACGAG 1 cut(s) 725
BbsI GAAGAC 2 cut(s) 1076, 1188
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 5 cut(s) 65, 700, 752, 822, 916
BccI CCATC 6 cut(s) 259, 539, 559, 673, 911, 1121
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 1 cut(s) 665
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 2 cut(s) 506, 798
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 6 cut(s) 356, 863, 881, 1002, 1095, 1200
BfuAI ACCTGC 2 cut(s) 589, 1184
BglII AGATCT 1 cut(s) 226
BisI GCNGC 7 cut(s) 54, 415, 418, 714, 741, 836, 930
BlnI CCTAGG 1 cut(s) 1094
BlsI GCNGC 7 cut(s) 55, 416, 419, 715, 742, 837, 931
Bme1390I CCNGG 3 cut(s) 506, 665, 798
Bme18I GGWCC 3 cut(s) 170, 1051, 1149
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 7 cut(s) 170, 794, 877, 896, 920, 1051, 1149
BmiI GGNNCC 2 cut(s) 240, 785
BmrFI CCNGG 3 cut(s) 506, 665, 798
BmrI ACTGGG 3 cut(s) 741, 801, 824
BmsI GCATC 4 cut(s) 704, 844, 916, 1165
BmuI ACTGGG 3 cut(s) 741, 801, 824
BpiI GAAGAC 2 cut(s) 1076, 1188
BpmI CTGGAG 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 2 cut(s) 506, 798
BsaJI CCNNGG 9 cut(s) 173, 252, 505, 664, 797, 1094, 1116, 1163, 1212
BsaWI WCCGGW 2 cut(s) 62, 632
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 833, 863
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 103, 133, 229, 321, 424
Bse118I RCCGGY 2 cut(s) 632, 659
Bse1I ACTGG 7 cut(s) 127, 680, 696, 736, 796, 819, 895
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 2 cut(s) 304, 362
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 9 cut(s) 173, 252, 505, 664, 797, 1094, 1116, 1163, 1212
BseGI GGATG 6 cut(s) 270, 515, 684, 688, 859, 1180
BseLI CCNNNNNNNGG 6 cut(s) 69, 103, 133, 229, 321, 424
BseMI GCAATG 2 cut(s) 304, 362
BseMII CTCAG 4 cut(s) 37, 467, 864, 1179
BseNI ACTGG 7 cut(s) 127, 680, 696, 736, 796, 819, 895
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 5 cut(s) 65, 700, 752, 822, 916
BseYI CCCAGC 1 cut(s) 716
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 8 cut(s) 608, 659, 663, 796, 871, 879, 898, 922
BshTI ACCGGT 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 5 cut(s) 63, 505, 633, 660, 797
BsiWI CGTACG 1 cut(s) 409
BslFI GGGAC 3 cut(s) 544, 702, 901
BslI CCNNNNNNNGG 6 cut(s) 69, 103, 133, 229, 321, 424
BsmFI GGGAC 3 cut(s) 544, 702, 901
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 8 cut(s) 608, 659, 663, 796, 871, 879, 898, 922
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 4 cut(s) 405, 430, 705, 822
Bsp143I GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 5 cut(s) 257, 269, 415, 418, 1010
BspANI GGCC 8 cut(s) 608, 659, 663, 796, 871, 879, 898, 922
BspCNI CTCAG 4 cut(s) 36, 468, 865, 1180
BspFNI CGCG 1 cut(s) 87
BspHI TCATGA 2 cut(s) 1021, 1123
BspLI GGNNCC 2 cut(s) 240, 785
BspMI ACCTGC 2 cut(s) 589, 1184
BspPI GGATC 3 cut(s) 88, 159, 1202
BsrDI GCAATG 2 cut(s) 304, 362
BsrFI RCCGGY 2 cut(s) 632, 659
BsrI ACTGG 7 cut(s) 127, 680, 696, 736, 796, 819, 895
BssAI RCCGGY 2 cut(s) 632, 659
BssECI CCNNGG 9 cut(s) 173, 252, 505, 664, 797, 1094, 1116, 1163, 1212
BssMI GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
BssSI CACGAG 1 cut(s) 725
BssT1I CCWWGG 5 cut(s) 252, 1094, 1116, 1163, 1212
Bst2BI CACGAG 1 cut(s) 725
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 167, 174
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 5 cut(s) 23, 476, 754, 873, 1188
BstDSI CCRYGG 2 cut(s) 173, 252
BstF5I GGATG 6 cut(s) 270, 515, 684, 688, 859, 1180
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 2 cut(s) 87, 297
BstKTI GATC 7 cut(s) 60, 96, 154, 229, 304, 355, 1210
BstMBI GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
BstMWI GCNNNNNNNGC 1 cut(s) 997
BstNI CCWGG 1 cut(s) 665
BstSCI CCNGG 3 cut(s) 504, 663, 796
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 5 cut(s) 65, 700, 752, 822, 916
BstV2I GAAGAC 2 cut(s) 1076, 1188
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 8 cut(s) 608, 659, 663, 796, 871, 879, 898, 922
BtgI CCRYGG 2 cut(s) 173, 252
BtsCI GGATG 6 cut(s) 270, 515, 684, 688, 859, 1180
BveI ACCTGC 2 cut(s) 589, 1184
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 670
CciI TCATGA 2 cut(s) 1021, 1123
CfoI GCGC 2 cut(s) 87, 297
Cfr10I RCCGGY 2 cut(s) 632, 659
Cfr13I GGNCC 7 cut(s) 170, 794, 877, 896, 920, 1051, 1149
Csp6I GTAC 3 cut(s) 410, 579, 1197
CspAI ACCGGT 1 cut(s) 632
CspCI CAANNNNNGTGG 2 cut(s) 582, 617
CviAII CATG 8 cut(s) 98, 155, 253, 286, 494, 527, 1022, 1124
CviQI GTAC 3 cut(s) 410, 579, 1197
DdeI CTNAG 5 cut(s) 23, 476, 754, 873, 1188
DpnI GATC 7 cut(s) 59, 95, 153, 228, 303, 354, 1209
DpnII GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
EaeI YGGCCR 2 cut(s) 657, 661
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 5 cut(s) 252, 1094, 1116, 1163, 1212
Eco147I AGGCCT 1 cut(s) 871
Eco24I GRGCYC 3 cut(s) 430, 705, 822
Eco47I GGWCC 3 cut(s) 170, 1051, 1149
Eco57I CTGAAG 1 cut(s) 1200
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 704
EcoO109I RGGNCCY 2 cut(s) 877, 1051
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 5 cut(s) 252, 1094, 1116, 1163, 1212
EcoT38I GRGCYC 3 cut(s) 430, 705, 822
ErhI CCWWGG 5 cut(s) 252, 1094, 1116, 1163, 1212
FaeI CATG 8 cut(s) 101, 158, 256, 289, 497, 530, 1025, 1127
FalI AAGNNNNNCTT 2 cut(s) 989, 1021
FaqI GGGAC 3 cut(s) 544, 702, 901
FatI CATG 8 cut(s) 97, 154, 252, 285, 493, 526, 1021, 1123
FauNDI CATATG 1 cut(s) 422
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 7 cut(s) 54, 415, 418, 714, 741, 836, 930
FokI GGATG 6 cut(s) 277, 522, 691, 695, 866, 1187
FriOI GRGCYC 3 cut(s) 430, 705, 822
FseI GGCCGGCC 1 cut(s) 663
Fsp4HI GCNGC 7 cut(s) 54, 415, 418, 714, 741, 836, 930
FspBI CTAG 6 cut(s) 356, 863, 881, 1002, 1095, 1200
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 2 cut(s) 86, 296
GluI GCNGC 7 cut(s) 54, 415, 418, 714, 741, 836, 930
GsaI CCCAGC 1 cut(s) 720
GsuI CTGGAG 1 cut(s) 860
HaeIII GGCC 8 cut(s) 608, 659, 663, 796, 871, 879, 898, 922
HapII CCGG 5 cut(s) 63, 505, 633, 660, 797
HhaI GCGC 2 cut(s) 87, 297
Hin1II CATG 8 cut(s) 101, 158, 256, 289, 497, 530, 1025, 1127
Hin6I GCGC 2 cut(s) 85, 295
HinP1I GCGC 2 cut(s) 85, 295
HincII GTYRAC 1 cut(s) 638
HindII GTYRAC 1 cut(s) 638
HinfI GANTC 4 cut(s) 219, 390, 1072, 1184
HpaII CCGG 5 cut(s) 63, 505, 633, 660, 797
HphI GGTGA 5 cut(s) 157, 283, 983, 1024, 1049
Hpy166II GTNNAC 4 cut(s) 170, 403, 638, 1040
Hpy188I TCNGA 9 cut(s) 26, 78, 93, 224, 672, 853, 1077, 1189, 1207
Hpy188III TCNNGA 4 cut(s) 394, 727, 1022, 1124
Hpy8I GTNNAC 4 cut(s) 170, 403, 638, 1040
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 104, 142, 1078, 1213
HpyCH4III ACNGT 2 cut(s) 167, 174
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 367, 385, 403, 526, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 997
HpyF3I CTNAG 5 cut(s) 23, 476, 754, 873, 1188
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 8 cut(s) 101, 158, 256, 289, 497, 530, 1025, 1127
HspAI GCGC 2 cut(s) 85, 295
KroI GCCGGC 1 cut(s) 659
KroNI GCCGGC 1 cut(s) 661
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
LmnI GCTCC 4 cut(s) 136, 978, 1208, 1222
Lsp1109I GCAGC 5 cut(s) 65, 700, 752, 822, 916
LweI GCATC 4 cut(s) 704, 844, 916, 1165
MaeI CTAG 6 cut(s) 356, 863, 881, 1002, 1095, 1200
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 4 cut(s) 279, 589, 727, 1057
MalI GATC 7 cut(s) 59, 95, 153, 228, 303, 354, 1209
MboI GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
MboII GAAGA 9 cut(s) 113, 172, 188, 493, 632, 1081, 1090, 1093, 1193
MfeI CAATTG 1 cut(s) 1133
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 4 cut(s) 405, 430, 705, 822
MluCI AATT 7 cut(s) 208, 247, 769, 776, 942, 1025, 1133
MlyI GAGTC 2 cut(s) 1066, 1178
MmeI TCCRAC 2 cut(s) 831, 1152
MroNI GCCGGC 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 1088
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 2 cut(s) 290, 1035
MspI CCGG 5 cut(s) 63, 505, 633, 660, 797
MspR9I CCNGG 3 cut(s) 506, 665, 798
MunI CAATTG 1 cut(s) 1133
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 997
NaeI GCCGGC 1 cut(s) 661
NciI CCSGG 2 cut(s) 506, 798
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 422
NdeII GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
NgoMIV GCCGGC 1 cut(s) 659
NlaIII CATG 8 cut(s) 101, 158, 256, 289, 497, 530, 1025, 1127
NlaIV GGNNCC 2 cut(s) 240, 785
NmuCI GTSAC 1 cut(s) 727
NsbI TGCGCA 1 cut(s) 296
PagI TCATGA 2 cut(s) 1021, 1123
PaqCI CACCTGC 1 cut(s) 589
PceI AGGCCT 1 cut(s) 871
PctI GAATGC 1 cut(s) 331
PdiI GCCGGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 1088
PfeI GAWTC 2 cut(s) 219, 390
Pfl23II CGTACG 1 cut(s) 409
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 7 cut(s) 55, 416, 419, 715, 742, 837, 931
PleI GAGTC 2 cut(s) 1066, 1178
PpsI GAGTC 2 cut(s) 1066, 1178
PpuMI RGGWCCY 1 cut(s) 1051
Psp5II RGGWCCY 1 cut(s) 1051
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 1 cut(s) 663
PspLI CGTACG 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 240, 785
PspPI GGNCC 7 cut(s) 170, 794, 877, 896, 920, 1051, 1149
PspPPI RGGWCCY 1 cut(s) 1051
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 226
RigI GGCCGGCC 1 cut(s) 663
RsaI GTAC 3 cut(s) 411, 580, 1198
RsaNI GTAC 3 cut(s) 410, 579, 1197
RseI CAYNNNNRTG 2 cut(s) 290, 1035
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 7 cut(s) 54, 415, 418, 714, 741, 836, 930
Sau3AI GATC 7 cut(s) 57, 93, 151, 226, 301, 352, 1207
Sau96I GGNCC 7 cut(s) 170, 794, 877, 896, 920, 1051, 1149
SchI GAGTC 2 cut(s) 1066, 1178
ScrFI CCNGG 3 cut(s) 506, 665, 798
SduI GDGCHC 4 cut(s) 405, 430, 705, 822
SfaNI GCATC 4 cut(s) 704, 844, 916, 1165
SinI GGWCC 3 cut(s) 170, 1051, 1149
SmiMI CAYNNNNRTG 2 cut(s) 290, 1035
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
SpeI ACTAGT 1 cut(s) 862
Sse9I AATT 7 cut(s) 208, 247, 769, 776, 942, 1025, 1133
SseBI AGGCCT 1 cut(s) 871
SsiI CCGC 5 cut(s) 257, 269, 415, 418, 1010
SspI AATATT 1 cut(s) 1230
SspMI CTAG 6 cut(s) 356, 863, 881, 1002, 1095, 1200
StuI AGGCCT 1 cut(s) 871
StyD4I CCNGG 3 cut(s) 504, 663, 796
StyI CCWWGG 5 cut(s) 252, 1094, 1116, 1163, 1212
TaaI ACNGT 2 cut(s) 167, 174
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 12, 430, 618
TasI AATT 7 cut(s) 208, 247, 769, 776, 942, 1025, 1133
TauI GCSGC 2 cut(s) 417, 420
TfiI GAWTC 2 cut(s) 219, 390
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 5 cut(s) 53, 713, 740, 835, 929
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 4 cut(s) 114, 1019, 1038, 1112
TspGWI ACGGA 1 cut(s) 231
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 3 cut(s) 170, 1051, 1149
XapI RAATTY 2 cut(s) 247, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 1094
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 6 cut(s) 356, 863, 881, 1002, 1095, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.