Rmu_sc0004154.1_g000010

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004154.1
OG0000123
Physical Location & Seq
Reverse (-)
38228 .. 38905
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004154.1_g000010.1.cds

Sequence Viewer

Length: 678 bp
atggcggcggaggaggctaccgtgcatttggttgggggcgaggaagcaatccaagatccttttttctatgtttgtggccgattgctttcccagaaacaggtcttcctaccgtcgttttcggcaacgatttccggcatctgggggttgaaagaacgcatgttgatccgtgaggagggagaagggatctatgtcttccagtttaaggaacaagagacgaaggatcacatcttcaacggtggaccatggttcttcaacaattcgatgcttctcttggcggattatgatggtatctgggatctggcagaggttccgttgaattctatggcgacggtgagagggttgcgcatggctatgtgcaatgatcgtgccctaaccctgcttgggaatgaattgggggtatttgtgctttatgatcaaggggcgttgcagagaaaagatcatgtacaacaattccggattatgcacgacgttcgccggcgcatatgggctcgacgtatgtactccttctcggcagcggtggaggtcaaactagaactgaggtatgagaaatgccaccataatgggtggctgcgatggtatgctgacaacgataatggcttcggggaacattgctccaccagtagaggtaccgatggtggcggtcgaagggctcggagatggcttgtccagtcgatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

225

Amino Acids

25.97

Weight (kDa)

6.66

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 344
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 626
AccIII TCCGGA 1 cut(s) 453
AciI CCGC 5 cut(s) 5, 8, 275, 515, 639
AclWI GGATC 5 cut(s) 50, 157, 191, 228, 303
AcoI YGGCCR 1 cut(s) 76
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 3 cut(s) 444, 500, 628
AfiI CCNNNNNNNGG 5 cut(s) 97, 138, 172, 202, 381
AgsI TTSAA 4 cut(s) 148, 232, 253, 316
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 5 cut(s) 50, 157, 191, 228, 303
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 512, 568
ApoI RAATTY 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 626
AspLEI GCGC 2 cut(s) 345, 480
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 343
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 2 cut(s) 490, 652
BbsI GAAGAC 2 cut(s) 94, 184
BbvI GCAGC 2 cut(s) 524, 555
BccI CCATC 4 cut(s) 278, 567, 626, 651
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 530
BisI GCNGC 3 cut(s) 6, 513, 569
BlsI GCNGC 3 cut(s) 7, 514, 570
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 309, 628
BmsI GCATC 2 cut(s) 144, 252
BpiI GAAGAC 2 cut(s) 94, 184
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 453
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 138, 172, 202, 381
Bse118I RCCGGY 1 cut(s) 474
Bse1I ACTGG 3 cut(s) 196, 618, 667
Bse3DI GCAATG 2 cut(s) 364, 607
BseAI TCCGGA 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 242
BseLI CCNNNNNNNGG 5 cut(s) 97, 138, 172, 202, 381
BseMI GCAATG 2 cut(s) 364, 607
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 3 cut(s) 196, 618, 667
BseRI GAGGAG 2 cut(s) 26, 185
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 2 cut(s) 524, 555
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 626
BsiEI CGRYCG 1 cut(s) 643
BsiSI CCGG 3 cut(s) 132, 454, 475
BslI CCNNNNNNNGG 5 cut(s) 97, 138, 172, 202, 381
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 3 cut(s) 370, 490, 652
Bsp13I TCCGGA 1 cut(s) 453
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 5 cut(s) 5, 8, 275, 515, 639
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 528
BspEI TCCGGA 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 309, 628
BspPI GGATC 5 cut(s) 50, 157, 191, 228, 303
BspT107I GGYRCC 1 cut(s) 626
BsrDI GCAATG 2 cut(s) 364, 607
BsrFI RCCGGY 1 cut(s) 474
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 3 cut(s) 196, 618, 667
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 4 cut(s) 22, 111, 236, 331
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 1 cut(s) 536
BstDSI CCRYGG 1 cut(s) 242
BstHHI GCGC 2 cut(s) 345, 480
BstKTI GATC 9 cut(s) 58, 165, 186, 223, 298, 364, 415, 439, 675
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 524, 555
BstV2I GAAGAC 2 cut(s) 94, 184
BstX2I RGATCY 3 cut(s) 55, 183, 295
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 3 cut(s) 55, 183, 295
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 586
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 2 cut(s) 345, 480
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 443, 499, 627
CviAII CATG 4 cut(s) 157, 243, 346, 440
CviJI RGCY 8 cut(s) 17, 78, 350, 488, 568, 597, 650, 661
CviKI_1 RGCY 8 cut(s) 17, 78, 350, 488, 568, 597, 650, 661
CviQI GTAC 3 cut(s) 443, 499, 627
DdeI CTNAG 1 cut(s) 536
DpnI GATC 9 cut(s) 57, 164, 185, 222, 297, 363, 414, 438, 674
DpnII GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
EaeI YGGCCR 1 cut(s) 76
EciI GGCGGA 2 cut(s) 23, 290
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 2 cut(s) 490, 652
Eco47I GGWCC 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 2 cut(s) 490, 652
ErhI CCWWGG 1 cut(s) 242
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 4 cut(s) 160, 246, 349, 443
FatI CATG 4 cut(s) 156, 242, 345, 439
FauNDI CATATG 1 cut(s) 482
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 6, 513, 569
FriOI GRGCYC 2 cut(s) 490, 652
Fsp4HI GCNGC 3 cut(s) 6, 513, 569
FspBI CTAG 1 cut(s) 530
FspI TGCGCA 1 cut(s) 344
GlaI GCGC 2 cut(s) 344, 479
GluI GCNGC 3 cut(s) 6, 513, 569
HaeIII GGCC 1 cut(s) 78
HapII CCGG 3 cut(s) 132, 454, 475
HhaI GCGC 2 cut(s) 345, 480
Hin1II CATG 4 cut(s) 160, 246, 349, 443
Hin6I GCGC 2 cut(s) 343, 478
HinP1I GCGC 2 cut(s) 343, 478
HpaII CCGG 3 cut(s) 132, 454, 475
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 654, 677
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 1 cut(s) 239
Hpy99I CGWCG 4 cut(s) 115, 331, 470, 495
HpyAV CCTTC 4 cut(s) 173, 211, 514, 639
HpyCH4III ACNGT 4 cut(s) 22, 111, 236, 331
HpyCH4IV ACGT 2 cut(s) 468, 493
HpyCH4V TGCA 4 cut(s) 25, 357, 427, 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 2 cut(s) 468, 493
Hsp92II CATG 4 cut(s) 160, 246, 349, 443
HspAI GCGC 2 cut(s) 343, 478
Kpn2I TCCGGA 1 cut(s) 453
KpnI GGTACC 1 cut(s) 630
KroI GCCGGC 1 cut(s) 474
KroNI GCCGGC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 2 cut(s) 524, 555
LweI GCATC 2 cut(s) 144, 252
MaeI CTAG 1 cut(s) 530
MaeII ACGT 2 cut(s) 468, 493
MalI GATC 9 cut(s) 57, 164, 185, 222, 297, 363, 414, 438, 674
MboI GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
MboII GAAGA 4 cut(s) 94, 184, 220, 241
MflI RGATCY 3 cut(s) 55, 183, 295
MhlI GDGCHC 3 cut(s) 370, 490, 652
MluCI AATT 4 cut(s) 256, 316, 389, 449
MreI CGCCGGCG 1 cut(s) 474
MroI TCCGGA 1 cut(s) 453
MroNI GCCGGC 1 cut(s) 474
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 2 cut(s) 350, 558
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 3 cut(s) 132, 454, 475
MwoI GCNNNNNNNGC 1 cut(s) 14
NaeI GCCGGC 1 cut(s) 476
NcoI CCATGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 482
NdeII GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
NgoMIV GCCGGC 1 cut(s) 474
NlaIII CATG 4 cut(s) 160, 246, 349, 443
NlaIV GGNNCC 2 cut(s) 309, 628
NmeAIII GCCGAG 1 cut(s) 488
NsbI TGCGCA 1 cut(s) 344
NspI RCATGY 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 476
PkrI GCNGC 3 cut(s) 7, 514, 570
PspN4I GGNNCC 2 cut(s) 309, 628
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 3 cut(s) 55, 183, 295
RsaI GTAC 3 cut(s) 444, 500, 628
RsaNI GTAC 3 cut(s) 443, 499, 627
RseI CAYNNNNRTG 2 cut(s) 350, 558
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 6, 513, 569
Sau3AI GATC 9 cut(s) 55, 162, 183, 220, 295, 361, 412, 436, 672
Sau96I GGNCC 1 cut(s) 239
SduI GDGCHC 3 cut(s) 370, 490, 652
SetI ASST 7 cut(s) 102, 309, 471, 496, 525, 542, 628
SfaNI GCATC 2 cut(s) 144, 252
SgrAI CRCCGGYG 1 cut(s) 474
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 350, 558
Sse9I AATT 4 cut(s) 256, 316, 389, 449
SsiI CCGC 5 cut(s) 5, 8, 275, 515, 639
SspMI CTAG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 22, 111, 236, 331
TaiI ACGT 2 cut(s) 471, 496
TaqI TCGA 4 cut(s) 260, 490, 643, 671
TasI AATT 4 cut(s) 256, 316, 389, 449
TatI WGTACW 2 cut(s) 442, 498
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 2 cut(s) 512, 568
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 2 cut(s) 155, 300
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.