Rmu_ssc0000357.1_g000017

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000357.1
OG0000123
Physical Location & Seq
Reverse (-)
62348 .. 62893
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000357.1_g000017.1.cds

Sequence Viewer

Length: 546 bp
atggcggaggaggcggcggcgtccttagcctcattggaggagaccgtagtgagtctagttgggggcggggagttgatccatgacccttttttttacctgtgtgggcgtttgctaaccaagaaaccagtggttattccatctttctctacggcgatgtccggaatatggaggctgaatgagagggtttcgatccgtgaagaggagggagggatcttcatgttccaattcaaggagcaggaggtgaagcaccgagttcttcatggcggcccctggtattacagtaattcgatgttgttggtggctgactacgacggtgttagggctttggcagaggttcctctgttctctttggatgtgtgggtggcggtgacaggtctgacggtttccatgctcaacgatcgggttctttctcgcctcggtaacatgctgggaacctttgtcaaggctaattatgtggcgctgcaacgtaaggaggctacccagtggatccggttgatccatgatgtgcgccgacgagtcttggctcggcgtacgatctgtttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

181

Amino Acids

20.46

Weight (kDa)

8.62

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 6 cut(s) 5, 14, 17, 66, 264, 365
AclWI GGATC 6 cut(s) 70, 184, 218, 481, 490, 494
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 3 cut(s) 165, 199, 229
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 6 cut(s) 70, 184, 218, 481, 490, 494
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 460
AspLEI GCGC 2 cut(s) 460, 510
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 253, 379
BamHI GGATCC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 447
BccI CCATC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 461
BisI GCNGC 4 cut(s) 15, 18, 265, 461
BlsI GCNGC 4 cut(s) 16, 19, 266, 462
Bme1390I CCNGG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 4 cut(s) 268, 336, 433, 488
BmrFI CCNGG 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 475
BmuI ACTGGG 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 269, 415
BsaWI WCCGGW 2 cut(s) 158, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 199, 229
Bse1I ACTGG 2 cut(s) 125, 481
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 269, 415
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 3 cut(s) 165, 199, 229
BseNI ACTGG 2 cut(s) 125, 481
BseRI GAGGAG 3 cut(s) 23, 53, 215
BseXI GCAGC 1 cut(s) 447
BseYI CCCAGC 1 cut(s) 427
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 159, 490
BsiWI CGTACG 1 cut(s) 530
BslI CCNNNNNNNGG 3 cut(s) 165, 199, 229
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
BspACI CCGC 6 cut(s) 5, 14, 17, 66, 264, 365
BspANI GGCC 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 158
BspLI GGNNCC 4 cut(s) 268, 336, 433, 488
BspPI GGATC 6 cut(s) 70, 184, 218, 481, 490, 494
BspTNI GGTCTC 1 cut(s) 35
BsrI ACTGG 2 cut(s) 125, 481
BssECI CCNNGG 2 cut(s) 269, 415
BssMI GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 4 cut(s) 46, 281, 314, 382
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 2 cut(s) 460, 510
BstKTI GATC 7 cut(s) 78, 192, 213, 400, 489, 498, 537
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 11, 26
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 210, 486
BstYI RGATCY 2 cut(s) 210, 486
BsuRI GGCC 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 132, 488
CfoI GCGC 2 cut(s) 460, 510
Cfr13I GGNCC 1 cut(s) 266
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 531
CviAII CATG 6 cut(s) 80, 217, 260, 388, 424, 500
CviJI RGCY 8 cut(s) 29, 172, 267, 302, 323, 446, 476, 524
CviKI_1 RGCY 8 cut(s) 29, 172, 267, 302, 323, 446, 476, 524
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 1 cut(s) 25
DpnI GATC 7 cut(s) 77, 191, 212, 399, 488, 497, 536
DpnII GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 269
FaeI CATG 6 cut(s) 83, 220, 263, 391, 427, 503
FaiI YATR 8 cut(s) 81, 166, 218, 261, 389, 425, 453, 501
FatI CATG 6 cut(s) 79, 216, 259, 387, 423, 499
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 4 cut(s) 15, 18, 265, 461
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 4 cut(s) 15, 18, 265, 461
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 459, 509
GluI GCNGC 4 cut(s) 15, 18, 265, 461
GsaI CCCAGC 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 1 cut(s) 267
HapII CCGG 2 cut(s) 159, 490
HgaI GACGC 1 cut(s) 9
HhaI GCGC 2 cut(s) 460, 510
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 6 cut(s) 83, 220, 263, 391, 427, 503
Hin6I GCGC 2 cut(s) 458, 508
HinP1I GCGC 2 cut(s) 458, 508
HinfI GANTC 2 cut(s) 52, 516
HpaII CCGG 2 cut(s) 159, 490
HphI GGTGA 2 cut(s) 253, 379
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 159
Hpy99I CGWCG 2 cut(s) 314, 516
HpyCH4III ACNGT 4 cut(s) 46, 281, 314, 382
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 26
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 466
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 6 cut(s) 83, 220, 263, 391, 427, 503
HspAI GCGC 2 cut(s) 458, 508
Kpn2I TCCGGA 1 cut(s) 158
Kzo9I GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 447
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 367, 419
MalI GATC 7 cut(s) 77, 191, 212, 399, 488, 497, 536
MboI GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
MboII GAAGA 3 cut(s) 205, 209, 248
MflI RGATCY 2 cut(s) 210, 486
MluCI AATT 3 cut(s) 224, 283, 448
MlyI GAGTC 2 cut(s) 61, 525
MroI TCCGGA 1 cut(s) 158
MspI CCGG 2 cut(s) 159, 490
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 11, 26
NdeII GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
NlaIII CATG 6 cut(s) 83, 220, 263, 391, 427, 503
NlaIV GGNNCC 4 cut(s) 268, 336, 433, 488
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 1 cut(s) 427
Pfl23II CGTACG 1 cut(s) 530
PkrI GCNGC 4 cut(s) 16, 19, 266, 462
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 2 cut(s) 60, 524
PpsI GAGTC 2 cut(s) 60, 524
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 1 cut(s) 269
PspLI CGTACG 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 268, 336, 433, 488
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 2 cut(s) 210, 486
PvuI CGATCG 1 cut(s) 400
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
SatI GCNGC 4 cut(s) 15, 18, 265, 461
Sau3AI GATC 7 cut(s) 75, 189, 210, 397, 486, 495, 534
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 61, 525
ScrFI CCNGG 1 cut(s) 271
SetI ASST 6 cut(s) 99, 243, 336, 376, 437, 469
Sse9I AATT 3 cut(s) 224, 283, 448
SsiI CCGC 6 cut(s) 5, 14, 17, 66, 264, 365
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 4 cut(s) 46, 281, 314, 382
TaiI ACGT 1 cut(s) 469
TaqI TCGA 2 cut(s) 188, 287
TasI AATT 3 cut(s) 224, 283, 448
TauI GCSGC 3 cut(s) 17, 20, 267
TscAI CASTG 2 cut(s) 132, 488
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 205, 248
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 132, 488
XceI RCATGY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.