Rmu_co8444475.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8444475.1
OG0000123
Physical Location & Seq
Forward (+)
608 .. 1456
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8444475.1_g000001.1.cds

Sequence Viewer

Length: 609 bp
atgatccttttcttttacctctgtgggcgtctgctatctccaaagcgcatggagatatcatcattctcggtggcgatctctggtgtttggagattgaaagagcgtgtgttgattcggcaggaggagggaggtatcttcgttttccagttcaaggagcaggaggtgaagacccatgccctcaatggcggcccttggttttataacaattctatgttgttggtggaggattatgttggtgttagggctgtggaggaggtaccgctgcgctaccttgaggtttgggtggcagtgacggggcttcgtattgctatgcgtaatgaacgagccctaaccctacttggaaaagatttggggcagtttgtacagtttgatcaagcggcgatggtgaggaaggagccaatccagaggatccggatttctgtgccggcgggggcgagggcggagatgctccctaaggggccgacggagctaggcttgatgcctgaggtggctggaggtagggtggcggtggatagaccggtgccggatgctgtagtagctgctgctgtgaccgctccggaaaaactggcaggaaaccctaattttgaattagggttgaccgcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

202

Amino Acids

22.4

Weight (kDa)

8.76

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 2 cut(s) 256, 520
AccBSI CCGCTC 1 cut(s) 554
AccIII TCCGGA 2 cut(s) 411, 556
AciI CCGC 8 cut(s) 186, 260, 377, 428, 440, 506, 552, 600
AclWI GGATC 2 cut(s) 403, 416
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 2 cut(s) 258, 363
AfiI CCNNNNNNNGG 1 cut(s) 151
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 3 cut(s) 97, 151, 587
AluBI AGCT 2 cut(s) 469, 539
AluI AGCT 2 cut(s) 469, 539
AlwI GGATC 2 cut(s) 403, 416
Aor13HI TCCGGA 2 cut(s) 411, 556
AoxI GGCC 2 cut(s) 187, 458
ApeKI GCWGC 3 cut(s) 262, 539, 542
AsiGI ACCGGT 1 cut(s) 517
Asp718I GGTACC 1 cut(s) 256
AspLEI GCGC 2 cut(s) 48, 267
AspS9I GGNCC 2 cut(s) 188, 458
AsuHPI GGTGA 2 cut(s) 175, 397
AxyI CCTNAGG 2 cut(s) 453, 483
BamHI GGATCC 1 cut(s) 408
BanI GGYRCC 2 cut(s) 256, 520
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 249, 526, 529
BccI CCATC 1 cut(s) 376
BclI TGATCA 1 cut(s) 370
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 5 cut(s) 187, 263, 378, 540, 543
BlsI GCNGC 5 cut(s) 188, 264, 379, 541, 544
BmgT120I GGNCC 2 cut(s) 188, 458
BmiI GGNNCC 5 cut(s) 258, 396, 410, 459, 522
BmsI GCATC 3 cut(s) 435, 468, 517
BpiI GAAGAC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 3 cut(s) 411, 517, 556
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 2 cut(s) 424, 517
Bse1I ACTGG 2 cut(s) 145, 570
Bse21I CCTNAGG 2 cut(s) 453, 483
BseAI TCCGGA 2 cut(s) 411, 556
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 145, 570
BseRI GAGGAG 2 cut(s) 137, 266
BseXI GCAGC 3 cut(s) 249, 526, 529
BshFI GGCC 2 cut(s) 189, 460
BshNI GGYRCC 2 cut(s) 256, 520
BshTI ACCGGT 1 cut(s) 517
BsiSI CCGG 5 cut(s) 412, 425, 518, 524, 557
BslI CCNNNNNNNGG 1 cut(s) 151
BsnI GGCC 2 cut(s) 189, 460
Bsp1286I GDGCHC 1 cut(s) 328
Bsp13I TCCGGA 2 cut(s) 411, 556
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 3, 75, 370, 408
BspACI CCGC 8 cut(s) 186, 260, 377, 428, 440, 506, 552, 600
BspANI GGCC 2 cut(s) 189, 460
BspCNI CTCAG 1 cut(s) 475
BspEI TCCGGA 2 cut(s) 411, 556
BspLI GGNNCC 5 cut(s) 258, 396, 410, 459, 522
BspPI GGATC 2 cut(s) 403, 416
BspT107I GGYRCC 2 cut(s) 256, 520
BsrBI CCGCTC 1 cut(s) 554
BsrFI RCCGGY 2 cut(s) 424, 517
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 2 cut(s) 145, 570
BssAI RCCGGY 2 cut(s) 424, 517
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 4 cut(s) 3, 75, 370, 408
BssNI GRCGYC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 366
BstACI GRCGYC 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 453, 483
BstF5I GGATG 1 cut(s) 532
BstHHI GCGC 2 cut(s) 48, 267
BstKTI GATC 4 cut(s) 6, 78, 373, 411
BstMBI GATC 4 cut(s) 3, 75, 370, 408
BstMWI GCNNNNNNNGC 3 cut(s) 466, 536, 551
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 3 cut(s) 249, 526, 529
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
Bsu36I CCTNAGG 2 cut(s) 453, 483
BsuRI GGCC 2 cut(s) 189, 460
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 2 cut(s) 48, 267
Cfr10I RCCGGY 2 cut(s) 424, 517
Cfr13I GGNCC 2 cut(s) 188, 458
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 257, 362
CspAI ACCGGT 1 cut(s) 517
CviAII CATG 2 cut(s) 49, 173
CviQI GTAC 2 cut(s) 257, 362
DdeI CTNAG 2 cut(s) 453, 483
DpnI GATC 4 cut(s) 5, 77, 372, 410
DpnII GATC 4 cut(s) 3, 75, 370, 408
EciI GGCGGA 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 57
Eco81I CCTNAGG 2 cut(s) 453, 483
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 52, 176
FaiI YATR 6 cut(s) 50, 174, 201, 212, 231, 311
FatI CATG 2 cut(s) 48, 172
FauI CCCGC 1 cut(s) 421
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 5 cut(s) 187, 263, 378, 540, 543
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 5 cut(s) 187, 263, 378, 540, 543
FspBI CTAG 1 cut(s) 470
GlaI GCGC 2 cut(s) 47, 266
GluI GCNGC 5 cut(s) 187, 263, 378, 540, 543
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 2 cut(s) 189, 460
HapII CCGG 5 cut(s) 412, 425, 518, 524, 557
HgaI GACGC 1 cut(s) 17
HhaI GCGC 2 cut(s) 48, 267
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 2 cut(s) 52, 176
Hin6I GCGC 2 cut(s) 46, 265
HinP1I GCGC 2 cut(s) 46, 265
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 1 cut(s) 112
HpaII CCGG 5 cut(s) 412, 425, 518, 524, 557
HphI GGTGA 2 cut(s) 175, 397
Hpy166II GTNNAC 1 cut(s) 597
Hpy188III TCNNGA 3 cut(s) 403, 412, 557
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 466, 536, 551
HpyF3I CTNAG 2 cut(s) 453, 483
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 2 cut(s) 52, 176
HspAI GCGC 2 cut(s) 46, 265
Kpn2I TCCGGA 2 cut(s) 411, 556
KpnI GGTACC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 3, 75, 370, 408
LmnI GCTCC 5 cut(s) 154, 394, 453, 466, 559
Lsp1109I GCAGC 3 cut(s) 249, 526, 529
LweI GCATC 3 cut(s) 435, 468, 517
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 289, 547
MalI GATC 4 cut(s) 5, 77, 372, 410
MbiI CCGCTC 1 cut(s) 554
MboI GATC 4 cut(s) 3, 75, 370, 408
MboII GAAGA 2 cut(s) 127, 178
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 3 cut(s) 205, 580, 587
MroI TCCGGA 2 cut(s) 411, 556
MroNI GCCGGC 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 5 cut(s) 412, 425, 518, 524, 557
MwoI GCNNNNNNNGC 3 cut(s) 466, 536, 551
NaeI GCCGGC 1 cut(s) 426
NdeII GATC 4 cut(s) 3, 75, 370, 408
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 2 cut(s) 52, 176
NlaIV GGNNCC 5 cut(s) 258, 396, 410, 459, 522
NmuCI GTSAC 2 cut(s) 289, 547
PdiI GCCGGC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 112
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 5 cut(s) 188, 264, 379, 541, 544
PsiI TTATAA 1 cut(s) 201
PspN4I GGNNCC 5 cut(s) 258, 396, 410, 459, 522
PspPI GGNCC 2 cut(s) 188, 458
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 2 cut(s) 258, 363
RsaNI GTAC 2 cut(s) 257, 362
SatI GCNGC 5 cut(s) 187, 263, 378, 540, 543
Sau3AI GATC 4 cut(s) 3, 75, 370, 408
Sau96I GGNCC 2 cut(s) 188, 458
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 3 cut(s) 435, 468, 517
SfcI CTRYAG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 3 cut(s) 205, 580, 587
SsiI CCGC 8 cut(s) 186, 260, 377, 428, 440, 506, 552, 600
SspMI CTAG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 366
TasI AATT 3 cut(s) 205, 580, 587
TatI WGTACW 1 cut(s) 361
TauI GCSGC 2 cut(s) 189, 380
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 2 cut(s) 289, 547
TseI GCWGC 3 cut(s) 262, 539, 542
Tsp45I GTSAC 2 cut(s) 289, 547
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.