FvH4_6g23161

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000123
Physical Location & Seq
Forward (+)
17008347 .. 17011098
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23161.t1

Sequence Viewer

Length: 729 bp
ATGACAGAGGCATTTGGTGCTTCCCGCCGATGTCCTCAATACATGTTGGGGTTGAAGGAACGCGTTCTGGTTCAACAGGAGGAGGAGGACATTCTTGTTTTCCAATTCAAGAATCAGGAGGCGAGAGATCGGGCTATGAACGGAGGACCTTGGTGTTTTAACAATATCATGTTGTTGATGGTGGATTACGATGATATTTGGGTGTCTGTGTCGGGTCTCCGTATAGCTATGCGGAGCGAGAAGGTATTGAAGAAGATCGAAGATTTGCTGGGGGTGTTTGTGCATGCCAATCTAATTGCTTTGGCAAGGAAGAAGAAGGTGGAGCTTCGGTATGCAAAATGTCATGGGATATACTCGAATTGCGGCTTGTTCTCTCACGGCGGGGGTAATTGTGATAAGGGGTTGGTGATGCTTGGCGGTGGAGTTTTCTGGGTCCCCGAATTTTCGGCGGGAAACCCTAGTTTTGAACTAGGGTTGACCGACGCTGGTGGGAAGCTGACCGGGCCTCAGGCTGCGAGGATGGGGTTGATTGGGCCTGACTCTATCTTTGGGCCCAAGAAGGCTAATTCTGGGTGTGCAGATACACTTGTTGTTAGGCCTGTTTTTGGGTCAGATTCTGCTAAATTGATGTTAGGTATAAGGCCTAATGGTGATGGGATTTTGCCTACCTTAGACTTGATTGAATTGGTGGATATCATGGTTACTGTTGGGACAACTTCTAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

243

Amino Acids

26.33

Weight (kDa)

8.18

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 63
AciI CCGC 6 cut(s) 25, 232, 363, 381, 417, 449
AcsI RAATTY 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 605
AflIII ACRYGT 2 cut(s) 42, 61
AgsI TTSAA 6 cut(s) 55, 74, 109, 250, 467, 683
AluBI AGCT 3 cut(s) 227, 325, 496
AluI AGCT 3 cut(s) 227, 325, 496
Alw26I GTCTC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 5 cut(s) 503, 533, 551, 596, 641
ApaI GGGCCC 1 cut(s) 555
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 440
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 6 cut(s) 146, 433, 503, 533, 551, 552
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 418, 662
AvaII GGWCC 2 cut(s) 146, 433
AxyI CCTNAGG 1 cut(s) 507
BaeGI GKGCMC 1 cut(s) 555
BaeI ACNNNNGTAYC 2 cut(s) 573, 606
BanII GRGCYC 1 cut(s) 555
BbvI GCAGC 1 cut(s) 499
BccI CCATC 3 cut(s) 172, 514, 647
BceAI ACGGC 1 cut(s) 394
BcnI CCSGG 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 3 cut(s) 459, 470, 720
BisI GCNGC 2 cut(s) 364, 513
BlsI GCNGC 2 cut(s) 365, 514
Bme1390I CCNGG 1 cut(s) 502
Bme18I GGWCC 2 cut(s) 146, 433
BmgT120I GGNCC 6 cut(s) 146, 433, 503, 533, 551, 552
BmiI GGNNCC 3 cut(s) 434, 435, 553
BmrFI CCNGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 502
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMII CTCAG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 95, 98
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 1 cut(s) 499
BseYI CCCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 505, 535, 553, 598, 643
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 2 cut(s) 419, 724
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 2 cut(s) 419, 724
BsnI GGCC 5 cut(s) 505, 535, 553, 598, 643
Bso31I GGTCTC 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 2 cut(s) 127, 255
BspACI CCGC 6 cut(s) 25, 232, 363, 381, 417, 449
BspANI GGCC 5 cut(s) 505, 535, 553, 598, 643
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 434, 435, 553
BspTNI GGTCTC 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 2 cut(s) 127, 255
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 706
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 507, 670
BstF5I GGATG 1 cut(s) 525
BstFNI CGCG 1 cut(s) 63
BstKTI GATC 2 cut(s) 130, 258
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 127, 255
BstMWI GCNNNNNNNGC 2 cut(s) 17, 502
BstNSI RCATGY 2 cut(s) 46, 287
BstSCI CCNGG 1 cut(s) 500
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 499
Bsu36I CCTNAGG 1 cut(s) 507
BsuRI GGCC 5 cut(s) 505, 535, 553, 598, 643
BtsCI GGATG 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 617
Cfr13I GGNCC 6 cut(s) 146, 433, 503, 533, 551, 552
CseI GACGC 1 cut(s) 491
CviAII CATG 5 cut(s) 43, 169, 284, 344, 697
DdeI CTNAG 2 cut(s) 507, 670
DpnI GATC 2 cut(s) 129, 257
DpnII GATC 2 cut(s) 127, 255
Eco130I CCWWGG 1 cut(s) 149
Eco147I AGGCCT 2 cut(s) 598, 643
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 221
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 146, 433
Eco81I CCTNAGG 1 cut(s) 507
EcoO109I RGGNCCY 2 cut(s) 146, 433
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 5 cut(s) 46, 172, 287, 347, 700
FaqI GGGAC 2 cut(s) 419, 724
FatI CATG 5 cut(s) 42, 168, 283, 343, 696
FauI CCCGC 3 cut(s) 32, 374, 442
Fnu4HI GCNGC 2 cut(s) 364, 513
FokI GGATG 1 cut(s) 532
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 2 cut(s) 364, 513
FspBI CTAG 3 cut(s) 459, 470, 720
GluI GCNGC 2 cut(s) 364, 513
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 5 cut(s) 505, 535, 553, 598, 643
HapII CCGG 1 cut(s) 501
HgaI GACGC 1 cut(s) 491
Hin1II CATG 5 cut(s) 46, 172, 287, 347, 700
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 3 cut(s) 112, 539, 614
HpaII CCGG 1 cut(s) 501
HphI GGTGA 2 cut(s) 418, 662
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 2 cut(s) 109, 116
Hpy8I GTNNAC 1 cut(s) 477
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 4 cut(s) 49, 235, 310, 553
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4V TGCA 3 cut(s) 283, 335, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 502
HpyF3I CTNAG 2 cut(s) 507, 670
Hsp92II CATG 5 cut(s) 46, 172, 287, 347, 700
KflI GGGWCCC 1 cut(s) 433
Kzo9I GATC 2 cut(s) 127, 255
LmnI GCTCC 2 cut(s) 234, 322
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 399
MaeI CTAG 3 cut(s) 459, 470, 720
MaeIII GTNAC 1 cut(s) 700
MalI GATC 2 cut(s) 129, 257
MboI GATC 2 cut(s) 127, 255
MboII GAAGA 5 cut(s) 262, 265, 272, 322, 325
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 8 cut(s) 104, 294, 358, 388, 440, 565, 623, 683
MluI ACGCGT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 8 cut(s) 45, 73, 76, 79, 112, 137, 510, 516
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 1 cut(s) 502
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 17, 502
NciI CCSGG 1 cut(s) 502
NdeII GATC 2 cut(s) 127, 255
NlaIII CATG 5 cut(s) 46, 172, 287, 347, 700
NlaIV GGNNCC 3 cut(s) 434, 435, 553
NspI RCATGY 2 cut(s) 46, 287
PaeI GCATGC 1 cut(s) 287
PceI AGGCCT 2 cut(s) 598, 643
PciI ACATGT 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 112, 614
PkrI GCNGC 2 cut(s) 365, 514
PleI GAGTC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 533
PpuMI RGGWCCY 2 cut(s) 146, 433
PscI ACATGT 1 cut(s) 42
Psp5II RGGWCCY 2 cut(s) 146, 433
PspFI CCCAGC 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 434, 435, 553
PspOMI GGGCCC 1 cut(s) 551
PspPI GGNCC 6 cut(s) 146, 433, 503, 533, 551, 552
PspPPI RGGWCCY 2 cut(s) 146, 433
PstNI CAGNNNCTG 1 cut(s) 617
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 364, 513
Sau3AI GATC 2 cut(s) 127, 255
Sau96I GGNCC 6 cut(s) 146, 433, 503, 533, 551, 552
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 502
SduI GDGCHC 1 cut(s) 555
SetI ASST 8 cut(s) 151, 229, 246, 321, 327, 498, 637, 671
SfaNI GCATC 1 cut(s) 399
SinI GGWCC 2 cut(s) 146, 433
SphI GCATGC 1 cut(s) 287
Sse9I AATT 8 cut(s) 104, 294, 358, 388, 440, 565, 623, 683
SseBI AGGCCT 2 cut(s) 598, 643
SsiI CCGC 6 cut(s) 25, 232, 363, 381, 417, 449
SspMI CTAG 3 cut(s) 459, 470, 720
StuI AGGCCT 2 cut(s) 598, 643
StyD4I CCNGG 1 cut(s) 500
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 706
TaqI TCGA 2 cut(s) 258, 356
TaqII GACCGA 1 cut(s) 494
TasI AATT 8 cut(s) 104, 294, 358, 388, 440, 565, 623, 683
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 112, 614
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 2 cut(s) 156, 209
VpaK11BI GGWCC 2 cut(s) 146, 433
XapI RAATTY 1 cut(s) 440
XceI RCATGY 2 cut(s) 46, 287
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 3 cut(s) 459, 470, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.