Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 251 |
| AccB1I | GGYRCC | 1 cut(s) | 370 |
| AccBSI | CCGCTC | 1 cut(s) | 707 |
| AccIII | TCCGGA | 1 cut(s) | 718 |
| AciI | CCGC | 8 cut(s) | 78, 368, 374, 518, 629, 707, 731, 765 |
| AclWI | GGATC | 3 cut(s) | 175, 491, 688 |
| AcoI | YGGCCR | 2 cut(s) | 515, 532 |
| AfaI | GTAC | 2 cut(s) | 42, 135 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 265, 541, 650, 794 |
| AgsI | TTSAA | 2 cut(s) | 265, 749 |
| AjnI | CCWGG | 1 cut(s) | 778 |
| AluBI | AGCT | 3 cut(s) | 35, 539, 581 |
| AluI | AGCT | 3 cut(s) | 35, 539, 581 |
| Alw26I | GTCTC | 2 cut(s) | 110, 662 |
| AlwI | GGATC | 3 cut(s) | 175, 491, 688 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 584, 626 |
| Aor13HI | TCCGGA | 1 cut(s) | 718 |
| AoxI | GGCC | 4 cut(s) | 515, 532, 776, 797 |
| ApeKI | GCWGC | 2 cut(s) | 331, 784 |
| AspLEI | GCGC | 1 cut(s) | 661 |
| AspS9I | GGNCC | 3 cut(s) | 302, 776, 797 |
| AsuC2I | CCSGG | 1 cut(s) | 789 |
| AsuHPI | GGTGA | 2 cut(s) | 289, 567 |
| AsuNHI | GCTAGC | 1 cut(s) | 334 |
| AvaII | GGWCC | 1 cut(s) | 302 |
| BanI | GGYRCC | 1 cut(s) | 370 |
| BbsI | GAAGAC | 1 cut(s) | 247 |
| BbvCI | CCTCAGC | 1 cut(s) | 540 |
| BbvI | GCAGC | 2 cut(s) | 318, 771 |
| BccI | CCATC | 3 cut(s) | 16, 115, 341 |
| BciT130I | CCWGG | 1 cut(s) | 780 |
| BclI | TGATCA | 1 cut(s) | 490 |
| BcnI | CCSGG | 1 cut(s) | 789 |
| BcoDI | GTCTC | 2 cut(s) | 110, 662 |
| BfaI | CTAG | 1 cut(s) | 335 |
| BisI | GCNGC | 4 cut(s) | 332, 369, 518, 785 |
| BlsI | GCNGC | 4 cut(s) | 333, 370, 519, 786 |
| Bme1390I | CCNGG | 2 cut(s) | 780, 789 |
| Bme18I | GGWCC | 1 cut(s) | 302 |
| BmgT120I | GGNCC | 3 cut(s) | 302, 776, 797 |
| BmiI | GGNNCC | 2 cut(s) | 126, 372 |
| BmrFI | CCNGG | 2 cut(s) | 780, 789 |
| BmrI | ACTGGG | 1 cut(s) | 783 |
| BmsI | GCATC | 3 cut(s) | 166, 355, 630 |
| BmtI | GCTAGC | 1 cut(s) | 338 |
| BmuI | ACTGGG | 1 cut(s) | 783 |
| BpiI | GAAGAC | 1 cut(s) | 247 |
| BpmI | CTGGAG | 1 cut(s) | 186 |
| Bpu10I | CCTNAGC | 1 cut(s) | 540 |
| BpuEI | CTTGAG | 1 cut(s) | 407 |
| BpuMI | CCSGG | 1 cut(s) | 789 |
| Bsa29I | ATCGAT | 1 cut(s) | 638 |
| BsaJI | CCNNGG | 3 cut(s) | 305, 439, 779 |
| BsaWI | WCCGGW | 1 cut(s) | 718 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 109, 139, 410, 440, 539, 569, 696, 726 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 265, 541, 650, 794 |
| Bse118I | RCCGGY | 1 cut(s) | 761 |
| Bse1I | ACTGG | 4 cut(s) | 169, 424, 699, 778 |
| BseAI | TCCGGA | 1 cut(s) | 718 |
| BseBI | CCWGG | 1 cut(s) | 780 |
| BseCI | ATCGAT | 1 cut(s) | 638 |
| BseDI | CCNNGG | 3 cut(s) | 305, 439, 779 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 265, 541, 650, 794 |
| BseMII | CTCAG | 2 cut(s) | 132, 531 |
| BseNI | ACTGG | 4 cut(s) | 169, 424, 699, 778 |
| BseRI | GAGGAG | 6 cut(s) | 117, 128, 158, 183, 251, 254 |
| BseXI | GCAGC | 2 cut(s) | 318, 771 |
| BseYI | CCCAGC | 1 cut(s) | 604 |
| BshFI | GGCC | 4 cut(s) | 517, 534, 778, 799 |
| BshNI | GGYRCC | 1 cut(s) | 370 |
| BshVI | ATCGAT | 1 cut(s) | 638 |
| BsiSI | CCGG | 4 cut(s) | 719, 762, 788, 800 |
| BslFI | GGGAC | 1 cut(s) | 645 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 265, 541, 650, 794 |
| BsmAI | GTCTC | 2 cut(s) | 110, 662 |
| BsmBI | CGTCTC | 2 cut(s) | 110, 662 |
| BsmFI | GGGAC | 1 cut(s) | 645 |
| BsnI | GGCC | 4 cut(s) | 517, 534, 778, 799 |
| Bsp13I | TCCGGA | 1 cut(s) | 718 |
| Bsp143I | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| Bsp19I | CCATGG | 2 cut(s) | 305, 439 |
| BspACI | CCGC | 8 cut(s) | 78, 368, 374, 518, 629, 707, 731, 765 |
| BspANI | GGCC | 4 cut(s) | 517, 534, 778, 799 |
| BspCNI | CTCAG | 2 cut(s) | 133, 532 |
| BspDI | ATCGAT | 1 cut(s) | 638 |
| BspEI | TCCGGA | 1 cut(s) | 718 |
| BspLI | GGNNCC | 2 cut(s) | 126, 372 |
| BspOI | GCTAGC | 1 cut(s) | 338 |
| BspPI | GGATC | 3 cut(s) | 175, 491, 688 |
| BspT107I | GGYRCC | 1 cut(s) | 370 |
| BsrBI | CCGCTC | 1 cut(s) | 707 |
| BsrFI | RCCGGY | 1 cut(s) | 761 |
| BsrI | ACTGG | 4 cut(s) | 169, 424, 699, 778 |
| BssAI | RCCGGY | 1 cut(s) | 761 |
| BssECI | CCNNGG | 3 cut(s) | 305, 439, 779 |
| BssMI | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| BssT1I | CCWWGG | 2 cut(s) | 305, 439 |
| Bst2UI | CCWGG | 1 cut(s) | 780 |
| BstC8I | GCNNGC | 1 cut(s) | 336 |
| BstDEI | CTNAG | 3 cut(s) | 141, 466, 540 |
| BstDSI | CCRYGG | 2 cut(s) | 305, 439 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstHHI | GCGC | 1 cut(s) | 661 |
| BstKTI | GATC | 5 cut(s) | 91, 183, 486, 493, 683 |
| BstMAI | GTCTC | 2 cut(s) | 110, 662 |
| BstMBI | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 587, 704, 784 |
| BstNI | CCWGG | 1 cut(s) | 780 |
| BstNSI | RCATGY | 1 cut(s) | 665 |
| BstSCI | CCNGG | 2 cut(s) | 778, 787 |
| BstV1I | GCAGC | 2 cut(s) | 318, 771 |
| BstV2I | GAAGAC | 1 cut(s) | 247 |
| BstX2I | RGATCY | 1 cut(s) | 483 |
| BstYI | RGATCY | 1 cut(s) | 483 |
| Bsu15I | ATCGAT | 1 cut(s) | 638 |
| BsuRI | GGCC | 4 cut(s) | 517, 534, 778, 799 |
| BsuTUI | ATCGAT | 1 cut(s) | 638 |
| BtgI | CCRYGG | 2 cut(s) | 305, 439 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 1 cut(s) | 336 |
| CaiI | CAGNNNCTG | 2 cut(s) | 584, 626 |
| CfoI | GCGC | 1 cut(s) | 661 |
| Cfr10I | RCCGGY | 1 cut(s) | 761 |
| Cfr13I | GGNCC | 3 cut(s) | 302, 776, 797 |
| ClaI | ATCGAT | 1 cut(s) | 638 |
| CseI | GACGC | 1 cut(s) | 612 |
| Csp6I | GTAC | 2 cut(s) | 41, 134 |
| CviAII | CATG | 4 cut(s) | 49, 306, 440, 662 |
| CviQI | GTAC | 2 cut(s) | 41, 134 |
| DdeI | CTNAG | 3 cut(s) | 141, 466, 540 |
| DpnI | GATC | 5 cut(s) | 90, 182, 485, 492, 682 |
| DpnII | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 251 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 251 |
| EaeI | YGGCCR | 2 cut(s) | 515, 532 |
| Eco130I | CCWWGG | 2 cut(s) | 305, 439 |
| Eco47I | GGWCC | 1 cut(s) | 302 |
| EcoRII | CCWGG | 1 cut(s) | 778 |
| EcoT14I | CCWWGG | 2 cut(s) | 305, 439 |
| ErhI | CCWWGG | 2 cut(s) | 305, 439 |
| Esp3I | CGTCTC | 2 cut(s) | 110, 662 |
| FaeI | CATG | 4 cut(s) | 52, 309, 443, 665 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 50, 82 |
| FaqI | GGGAC | 1 cut(s) | 645 |
| FatI | CATG | 4 cut(s) | 48, 305, 439, 661 |
| FauI | CCCGC | 3 cut(s) | 622, 724, 758 |
| FauNDI | CATATG | 1 cut(s) | 457 |
| FbaI | TGATCA | 1 cut(s) | 490 |
| Fnu4HI | GCNGC | 4 cut(s) | 332, 369, 518, 785 |
| FokI | GGATG | 1 cut(s) | 188 |
| Fsp4HI | GCNGC | 4 cut(s) | 332, 369, 518, 785 |
| FspBI | CTAG | 1 cut(s) | 335 |
| GlaI | GCGC | 1 cut(s) | 660 |
| GluI | GCNGC | 4 cut(s) | 332, 369, 518, 785 |
| GsaI | CCCAGC | 1 cut(s) | 608 |
| GsuI | CTGGAG | 1 cut(s) | 186 |
| HaeIII | GGCC | 4 cut(s) | 517, 534, 778, 799 |
| HapII | CCGG | 4 cut(s) | 719, 762, 788, 800 |
| HgaI | GACGC | 1 cut(s) | 612 |
| HhaI | GCGC | 1 cut(s) | 661 |
| Hin1II | CATG | 4 cut(s) | 52, 309, 443, 665 |
| Hin6I | GCGC | 1 cut(s) | 659 |
| HinP1I | GCGC | 1 cut(s) | 659 |
| HincII | GTYRAC | 2 cut(s) | 759, 771 |
| HindII | GTYRAC | 2 cut(s) | 759, 771 |
| HinfI | GANTC | 5 cut(s) | 4, 93, 358, 462, 613 |
| HpaII | CCGG | 4 cut(s) | 719, 762, 788, 800 |
| HphI | GGTGA | 2 cut(s) | 289, 567 |
| Hpy166II | GTNNAC | 3 cut(s) | 41, 759, 771 |
| Hpy188I | TCNGA | 2 cut(s) | 142, 495 |
| Hpy188III | TCNNGA | 4 cut(s) | 297, 362, 386, 719 |
| Hpy8I | GTNNAC | 3 cut(s) | 41, 759, 771 |
| HpyAV | CCTTC | 2 cut(s) | 54, 725 |
| HpyCH4V | TGCA | 1 cut(s) | 450 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 587, 704, 784 |
| HpyF3I | CTNAG | 3 cut(s) | 141, 466, 540 |
| Hsp92II | CATG | 4 cut(s) | 52, 309, 443, 665 |
| HspAI | GCGC | 1 cut(s) | 659 |
| Kpn2I | TCCGGA | 1 cut(s) | 718 |
| Ksp22I | TGATCA | 1 cut(s) | 490 |
| Kzo9I | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| LmnI | GCTCC | 3 cut(s) | 130, 547, 704 |
| Lsp1109I | GCAGC | 2 cut(s) | 318, 771 |
| LweI | GCATC | 3 cut(s) | 166, 355, 630 |
| MaeI | CTAG | 1 cut(s) | 335 |
| MalI | GATC | 5 cut(s) | 90, 182, 485, 492, 682 |
| MbiI | CCGCTC | 1 cut(s) | 707 |
| MboI | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| MboII | GAAGA | 1 cut(s) | 247 |
| MflI | RGATCY | 1 cut(s) | 483 |
| MluCI | AATT | 4 cut(s) | 84, 260, 742, 749 |
| MlyI | GAGTC | 3 cut(s) | 102, 352, 607 |
| MroI | TCCGGA | 1 cut(s) | 718 |
| MspA1I | CMGCKG | 1 cut(s) | 520 |
| MspI | CCGG | 4 cut(s) | 719, 762, 788, 800 |
| MspR9I | CCNGG | 2 cut(s) | 780, 789 |
| MvaI | CCWGG | 1 cut(s) | 780 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 587, 704, 784 |
| NciI | CCSGG | 1 cut(s) | 789 |
| NcoI | CCATGG | 2 cut(s) | 305, 439 |
| NdeI | CATATG | 1 cut(s) | 457 |
| NdeII | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| NheI | GCTAGC | 1 cut(s) | 334 |
| NlaIII | CATG | 4 cut(s) | 52, 309, 443, 665 |
| NlaIV | GGNNCC | 2 cut(s) | 126, 372 |
| NmeAIII | GCCGAG | 1 cut(s) | 560 |
| NspI | RCATGY | 1 cut(s) | 665 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 116 |
| PfeI | GAWTC | 2 cut(s) | 4, 462 |
| PkrI | GCNGC | 4 cut(s) | 333, 370, 519, 786 |
| PleI | GAGTC | 3 cut(s) | 101, 352, 607 |
| PpsI | GAGTC | 3 cut(s) | 101, 352, 607 |
| Psp6I | CCWGG | 1 cut(s) | 778 |
| PspFI | CCCAGC | 1 cut(s) | 604 |
| PspGI | CCWGG | 1 cut(s) | 778 |
| PspN4I | GGNNCC | 2 cut(s) | 126, 372 |
| PspPI | GGNCC | 3 cut(s) | 302, 776, 797 |
| PstNI | CAGNNNCTG | 2 cut(s) | 584, 626 |
| PsuI | RGATCY | 1 cut(s) | 483 |
| RsaI | GTAC | 2 cut(s) | 42, 135 |
| RsaNI | GTAC | 2 cut(s) | 41, 134 |
| SatI | GCNGC | 4 cut(s) | 332, 369, 518, 785 |
| Sau3AI | GATC | 5 cut(s) | 88, 180, 483, 490, 680 |
| Sau96I | GGNCC | 3 cut(s) | 302, 776, 797 |
| SchI | GAGTC | 3 cut(s) | 102, 352, 607 |
| ScrFI | CCNGG | 2 cut(s) | 780, 789 |
| SfaNI | GCATC | 3 cut(s) | 166, 355, 630 |
| SinI | GGWCC | 1 cut(s) | 302 |
| SmlI | CTYRAG | 1 cut(s) | 386 |
| SmoI | CTYRAG | 1 cut(s) | 386 |
| Sse9I | AATT | 4 cut(s) | 84, 260, 742, 749 |
| SsiI | CCGC | 8 cut(s) | 78, 368, 374, 518, 629, 707, 731, 765 |
| SspMI | CTAG | 1 cut(s) | 335 |
| StyD4I | CCNGG | 2 cut(s) | 778, 787 |
| StyI | CCWWGG | 2 cut(s) | 305, 439 |
| TaqI | TCGA | 4 cut(s) | 91, 356, 363, 638 |
| TasI | AATT | 4 cut(s) | 84, 260, 742, 749 |
| TatI | WGTACW | 1 cut(s) | 133 |
| TauI | GCSGC | 2 cut(s) | 371, 520 |
| TfiI | GAWTC | 2 cut(s) | 4, 462 |
| TscAI | CASTG | 1 cut(s) | 706 |
| TseI | GCWGC | 2 cut(s) | 331, 784 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 1 cut(s) | 706 |
| VpaK11BI | GGWCC | 1 cut(s) | 302 |
| XceI | RCATGY | 1 cut(s) | 665 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 335 |