Zinc knuckle
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 587 |
| AccI | GTMKAC | 2 cut(s) | 65, 448 |
| AccII | CGCG | 1 cut(s) | 485 |
| AciI | CCGC | 6 cut(s) | 217, 270, 352, 483, 525, 661 |
| AclWI | GGATC | 5 cut(s) | 163, 190, 512, 546, 563 |
| AfaI | GTAC | 1 cut(s) | 564 |
| AfeI | AGCGCT | 1 cut(s) | 247 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 68, 129, 186 |
| AgsI | TTSAA | 2 cut(s) | 223, 424 |
| AjnI | CCWGG | 1 cut(s) | 355 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 96, 128, 514, 546 |
| AleI | CACNNNNGTG | 1 cut(s) | 95 |
| AluBI | AGCT | 1 cut(s) | 259 |
| AluI | AGCT | 1 cut(s) | 259 |
| Alw26I | GTCTC | 2 cut(s) | 70, 300 |
| AlwI | GGATC | 5 cut(s) | 163, 190, 512, 546, 563 |
| Ama87I | CYCGRG | 1 cut(s) | 52 |
| Aor51HI | AGCGCT | 1 cut(s) | 247 |
| AoxI | GGCC | 2 cut(s) | 115, 211 |
| ApeKI | GCWGC | 2 cut(s) | 243, 329 |
| AspLEI | GCGC | 3 cut(s) | 248, 487, 588 |
| AspS9I | GGNCC | 2 cut(s) | 7, 598 |
| AsuHPI | GGTGA | 2 cut(s) | 386, 680 |
| AvaI | CYCGRG | 1 cut(s) | 52 |
| AvaII | GGWCC | 2 cut(s) | 7, 598 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 555, 587 |
| BbvCI | CCTCAGC | 1 cut(s) | 231 |
| BbvI | GCAGC | 2 cut(s) | 255, 341 |
| BccI | CCATC | 1 cut(s) | 377 |
| BceAI | ACGGC | 2 cut(s) | 46, 256 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 640, 674 |
| BciT130I | CCWGG | 1 cut(s) | 357 |
| BcoDI | GTCTC | 2 cut(s) | 70, 300 |
| BfaI | CTAG | 3 cut(s) | 44, 282, 293 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 249 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 360 |
| BglII | AGATCT | 1 cut(s) | 295 |
| BisI | GCNGC | 2 cut(s) | 244, 330 |
| BlsI | GCNGC | 2 cut(s) | 245, 331 |
| Bme1390I | CCNGG | 1 cut(s) | 357 |
| Bme18I | GGWCC | 2 cut(s) | 7, 598 |
| BmeT110I | CYCGRG | 1 cut(s) | 52 |
| BmgT120I | GGNCC | 2 cut(s) | 7, 598 |
| BmrFI | CCNGG | 1 cut(s) | 357 |
| BmsI | GCATC | 1 cut(s) | 648 |
| Bpu10I | CCTNAGC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 2 cut(s) | 355, 454 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 68, 129, 186 |
| Bse118I | RCCGGY | 3 cut(s) | 47, 213, 332 |
| Bse1I | ACTGG | 2 cut(s) | 123, 314 |
| BseBI | CCWGG | 1 cut(s) | 357 |
| BseDI | CCNNGG | 2 cut(s) | 355, 454 |
| BseGI | GGATG | 3 cut(s) | 300, 388, 489 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 68, 129, 186 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseNI | ACTGG | 2 cut(s) | 123, 314 |
| BseRI | GAGGAG | 2 cut(s) | 410, 449 |
| BseXI | GCAGC | 2 cut(s) | 255, 341 |
| BseYI | CCCAGC | 1 cut(s) | 622 |
| BsgI | GTGCAG | 2 cut(s) | 73, 348 |
| Bsh1236I | CGCG | 1 cut(s) | 485 |
| BshFI | GGCC | 2 cut(s) | 117, 213 |
| BsiHKCI | CYCGRG | 1 cut(s) | 52 |
| BsiSI | CCGG | 5 cut(s) | 48, 180, 214, 333, 647 |
| BslFI | GGGAC | 2 cut(s) | 303, 582 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 68, 129, 186 |
| BsmAI | GTCTC | 2 cut(s) | 70, 300 |
| BsmFI | GGGAC | 2 cut(s) | 303, 582 |
| BsnI | GGCC | 2 cut(s) | 117, 213 |
| BsoBI | CYCGRG | 1 cut(s) | 52 |
| Bsp143I | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| Bsp19I | CCATGG | 1 cut(s) | 454 |
| BspACI | CCGC | 6 cut(s) | 217, 270, 352, 483, 525, 661 |
| BspANI | GGCC | 2 cut(s) | 117, 213 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspFNI | CGCG | 1 cut(s) | 485 |
| BspMAI | CTGCAG | 1 cut(s) | 163 |
| BspPI | GGATC | 5 cut(s) | 163, 190, 512, 546, 563 |
| BsrFI | RCCGGY | 3 cut(s) | 47, 213, 332 |
| BsrI | ACTGG | 2 cut(s) | 123, 314 |
| BssAI | RCCGGY | 3 cut(s) | 47, 213, 332 |
| BssECI | CCNNGG | 2 cut(s) | 355, 454 |
| BssMI | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| BssNAI | GTATAC | 1 cut(s) | 449 |
| BssT1I | CCWWGG | 1 cut(s) | 454 |
| Bst1107I | GTATAC | 1 cut(s) | 449 |
| Bst2UI | CCWGG | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 465 |
| BstC8I | GCNNGC | 3 cut(s) | 49, 215, 334 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstDSI | CCRYGG | 1 cut(s) | 454 |
| BstF5I | GGATG | 3 cut(s) | 300, 388, 489 |
| BstFNI | CGCG | 1 cut(s) | 485 |
| BstH2I | RGCGCY | 1 cut(s) | 249 |
| BstHHI | GCGC | 3 cut(s) | 248, 487, 588 |
| BstKTI | GATC | 6 cut(s) | 158, 185, 298, 520, 541, 558 |
| BstMAI | GTCTC | 2 cut(s) | 70, 300 |
| BstMBI | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 196, 360 |
| BstNI | CCWGG | 1 cut(s) | 357 |
| BstSCI | CCNGG | 1 cut(s) | 355 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstUI | CGCG | 1 cut(s) | 485 |
| BstV1I | GCAGC | 2 cut(s) | 255, 341 |
| BstX2I | RGATCY | 3 cut(s) | 155, 295, 538 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 100 |
| BstYI | RGATCY | 3 cut(s) | 155, 295, 538 |
| BstZ17I | GTATAC | 1 cut(s) | 449 |
| BsuRI | GGCC | 2 cut(s) | 117, 213 |
| BtgI | CCRYGG | 1 cut(s) | 454 |
| BtsCI | GGATG | 3 cut(s) | 300, 388, 489 |
| BtsIMutI | CAGTG | 1 cut(s) | 130 |
| Cac8I | GCNNGC | 3 cut(s) | 49, 215, 334 |
| CfoI | GCGC | 3 cut(s) | 248, 487, 588 |
| Cfr10I | RCCGGY | 3 cut(s) | 47, 213, 332 |
| Cfr13I | GGNCC | 2 cut(s) | 7, 598 |
| Csp6I | GTAC | 1 cut(s) | 563 |
| CviAII | CATG | 2 cut(s) | 455, 583 |
| CviQI | GTAC | 1 cut(s) | 563 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| DpnI | GATC | 6 cut(s) | 157, 184, 297, 519, 540, 557 |
| DpnII | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| EciI | GGCGGA | 1 cut(s) | 341 |
| Eco130I | CCWWGG | 1 cut(s) | 454 |
| Eco47I | GGWCC | 2 cut(s) | 7, 598 |
| Eco47III | AGCGCT | 1 cut(s) | 247 |
| Eco88I | CYCGRG | 1 cut(s) | 52 |
| EcoO109I | RGGNCCY | 1 cut(s) | 598 |
| EcoRII | CCWGG | 1 cut(s) | 355 |
| EcoT14I | CCWWGG | 1 cut(s) | 454 |
| ErhI | CCWWGG | 1 cut(s) | 454 |
| FaeI | CATG | 2 cut(s) | 458, 586 |
| FaqI | GGGAC | 2 cut(s) | 303, 582 |
| FatI | CATG | 2 cut(s) | 454, 582 |
| FauI | CCCGC | 1 cut(s) | 518 |
| FblI | GTMKAC | 2 cut(s) | 65, 448 |
| Fnu4HI | GCNGC | 2 cut(s) | 244, 330 |
| FokI | GGATG | 3 cut(s) | 287, 395, 476 |
| Fsp4HI | GCNGC | 2 cut(s) | 244, 330 |
| FspBI | CTAG | 3 cut(s) | 44, 282, 293 |
| FspI | TGCGCA | 1 cut(s) | 587 |
| GlaI | GCGC | 3 cut(s) | 247, 486, 587 |
| GluI | GCNGC | 2 cut(s) | 244, 330 |
| GsaI | CCCAGC | 1 cut(s) | 626 |
| HaeII | RGCGCY | 1 cut(s) | 249 |
| HaeIII | GGCC | 2 cut(s) | 117, 213 |
| HapII | CCGG | 5 cut(s) | 48, 180, 214, 333, 647 |
| HhaI | GCGC | 3 cut(s) | 248, 487, 588 |
| Hin1II | CATG | 2 cut(s) | 458, 586 |
| Hin6I | GCGC | 3 cut(s) | 246, 485, 586 |
| HinP1I | GCGC | 3 cut(s) | 246, 485, 586 |
| HincII | GTYRAC | 1 cut(s) | 66 |
| HindII | GTYRAC | 1 cut(s) | 66 |
| HinfI | GANTC | 1 cut(s) | 405 |
| HpaII | CCGG | 5 cut(s) | 48, 180, 214, 333, 647 |
| HphI | GGTGA | 2 cut(s) | 386, 680 |
| Hpy166II | GTNNAC | 3 cut(s) | 66, 449, 461 |
| Hpy188I | TCNGA | 4 cut(s) | 85, 263, 305, 404 |
| Hpy188III | TCNNGA | 3 cut(s) | 54, 282, 392 |
| Hpy8I | GTNNAC | 3 cut(s) | 66, 449, 461 |
| Hpy99I | CGWCG | 1 cut(s) | 67 |
| HpyAV | CCTTC | 2 cut(s) | 122, 217 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 465 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 21, 36, 90, 161, 171, 329, 675 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 196, 360 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| Hsp92II | CATG | 2 cut(s) | 458, 586 |
| HspAI | GCGC | 3 cut(s) | 246, 485, 586 |
| KroI | GCCGGC | 3 cut(s) | 47, 213, 332 |
| KroNI | GCCGGC | 3 cut(s) | 49, 215, 334 |
| Kzo9I | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| Lsp1109I | GCAGC | 2 cut(s) | 255, 341 |
| LweI | GCATC | 1 cut(s) | 648 |
| MaeI | CTAG | 3 cut(s) | 44, 282, 293 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MalI | GATC | 6 cut(s) | 157, 184, 297, 519, 540, 557 |
| MboI | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| MboII | GAAGA | 1 cut(s) | 451 |
| MflI | RGATCY | 3 cut(s) | 155, 295, 538 |
| MluCI | AATT | 2 cut(s) | 478, 668 |
| MmeI | TCCRAC | 4 cut(s) | 81, 108, 382, 525 |
| MroNI | GCCGGC | 3 cut(s) | 47, 213, 332 |
| MslI | CAYNNNNRTG | 2 cut(s) | 95, 494 |
| MspI | CCGG | 5 cut(s) | 48, 180, 214, 333, 647 |
| MspR9I | CCNGG | 1 cut(s) | 357 |
| MvaI | CCWGG | 1 cut(s) | 357 |
| MvnI | CGCG | 1 cut(s) | 485 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 196, 360 |
| NaeI | GCCGGC | 3 cut(s) | 49, 215, 334 |
| NcoI | CCATGG | 1 cut(s) | 454 |
| NdeII | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| NgoMIV | GCCGGC | 3 cut(s) | 47, 213, 332 |
| NlaIII | CATG | 2 cut(s) | 458, 586 |
| NsbI | TGCGCA | 1 cut(s) | 587 |
| OliI | CACNNNNGTG | 1 cut(s) | 95 |
| PaeR7I | CTCGAG | 1 cut(s) | 52 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 571 |
| PdiI | GCCGGC | 3 cut(s) | 49, 215, 334 |
| PfeI | GAWTC | 1 cut(s) | 405 |
| PkrI | GCNGC | 2 cut(s) | 245, 331 |
| PpuMI | RGGWCCY | 1 cut(s) | 598 |
| Psp5II | RGGWCCY | 1 cut(s) | 598 |
| Psp6I | CCWGG | 1 cut(s) | 355 |
| PspFI | CCCAGC | 1 cut(s) | 622 |
| PspGI | CCWGG | 1 cut(s) | 355 |
| PspPI | GGNCC | 2 cut(s) | 7, 598 |
| PspPPI | RGGWCCY | 1 cut(s) | 598 |
| PstI | CTGCAG | 1 cut(s) | 163 |
| PsuI | RGATCY | 3 cut(s) | 155, 295, 538 |
| RsaI | GTAC | 1 cut(s) | 564 |
| RsaNI | GTAC | 1 cut(s) | 563 |
| RseI | CAYNNNNRTG | 2 cut(s) | 95, 494 |
| SalI | GTCGAC | 1 cut(s) | 64 |
| SatI | GCNGC | 2 cut(s) | 244, 330 |
| Sau3AI | GATC | 6 cut(s) | 155, 182, 295, 517, 538, 555 |
| Sau96I | GGNCC | 2 cut(s) | 7, 598 |
| ScrFI | CCNGG | 1 cut(s) | 357 |
| SfaNI | GCATC | 1 cut(s) | 648 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| Sfr274I | CTCGAG | 1 cut(s) | 52 |
| SinI | GGWCC | 2 cut(s) | 7, 598 |
| SlaI | CTCGAG | 1 cut(s) | 52 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 95, 494 |
| SmlI | CTYRAG | 1 cut(s) | 52 |
| SmoI | CTYRAG | 1 cut(s) | 52 |
| Sse9I | AATT | 2 cut(s) | 478, 668 |
| SsiI | CCGC | 6 cut(s) | 217, 270, 352, 483, 525, 661 |
| SspMI | CTAG | 3 cut(s) | 44, 282, 293 |
| StyD4I | CCNGG | 1 cut(s) | 355 |
| StyI | CCWWGG | 1 cut(s) | 454 |
| TaaI | ACNGT | 2 cut(s) | 81, 465 |
| TaqI | TCGA | 3 cut(s) | 53, 65, 574 |
| TasI | AATT | 2 cut(s) | 478, 668 |
| TfiI | GAWTC | 1 cut(s) | 405 |
| TscAI | CASTG | 1 cut(s) | 130 |
| TseI | GCWGC | 2 cut(s) | 243, 329 |
| TspDTI | ATGAA | 2 cut(s) | 522, 618 |
| TspRI | CASTG | 1 cut(s) | 130 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 598 |
| XbaI | TCTAGA | 1 cut(s) | 281 |
| XhoI | CTCGAG | 1 cut(s) | 52 |
| XmiI | GTMKAC | 2 cut(s) | 65, 448 |
| XspI | CTAG | 3 cut(s) | 44, 282, 293 |