Rmu_sc0006128.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006128.1
OG0000123
Physical Location & Seq
Reverse (-)
22829 .. 23625
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006128.1_g000007.1.cds

Sequence Viewer

Length: 597 bp
atggaggcggcttctagcctgtcgttgttggagggtgtggaagaggctgtgagcctggagagggtcttgatccgtgaggaggctgcgggagtttttgtcttccagttcaaggatcatgaggagaagaaccgtgttcttaatggagggtcgtggttctacagtggctccatgctggtgttggtagactacgacagaatcaggtcggtggaggcgatgcctttgcattacttggagatctgggtggcggtgaaggggttgcgaattgccatgcgcaatgagcgagctttaactctacttgggaatgcgctggggacttttgttcggcttgatgtggcggcgttgcaacggaaagatcatgtccaaaggatccgtctgatccatgacgtccgccgacggaaattccacggcatctgcccgacatgtggcttttttggtcacggtggaggtagttgtgataaagggttgatggcggaggcttcagcgttgttggcgtcggtcacagagcctgagatgactggaacaatagcggagcatgctgggctggtgtcggaaactagtgcagaaactagggttgaggtgtgtgcggtaaagttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

198

Amino Acids

21.86

Weight (kDa)

6.17

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
Acc16I TGCGCA 1 cut(s) 272
AccI GTMKAC 1 cut(s) 183
AciI CCGC 8 cut(s) 8, 86, 245, 335, 388, 470, 527, 584
AclWI GGATC 5 cut(s) 64, 120, 361, 370, 374
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 2 cut(s) 384, 491
AfiI CCNNNNNNNGG 4 cut(s) 61, 79, 109, 422
AflIII ACRYGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 109
AhlI ACTAGT 1 cut(s) 554
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AlwI GGATC 5 cut(s) 64, 120, 361, 370, 374
AlwNI CAGNNNCTG 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AspLEI GCGC 2 cut(s) 273, 307
AsuHPI GGTGA 1 cut(s) 259
BamHI GGATCC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 460
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 56
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 3 cut(s) 15, 555, 567
BfmI CTRYAG 1 cut(s) 157
BglII AGATCT 1 cut(s) 234
BisI GCNGC 3 cut(s) 9, 84, 336
BlsI GCNGC 3 cut(s) 10, 85, 337
Bme1390I CCNGG 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 166, 368
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 204, 417
BpiI GAAGAC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 384, 491
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 79, 109, 422
Bse1I ACTGG 2 cut(s) 103, 520
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 403
BseLI CCNNNNNNNGG 4 cut(s) 61, 79, 109, 422
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 2 cut(s) 103, 520
BseRI GAGGAG 2 cut(s) 92, 134
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 2 cut(s) 307, 536
BsgI GTGCAG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 4 cut(s) 61, 79, 109, 422
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 307
Bsp143I GATC 6 cut(s) 69, 112, 234, 352, 366, 375
BspACI CCGC 8 cut(s) 8, 86, 245, 335, 388, 470, 527, 584
BspCNI CTCAG 1 cut(s) 499
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 166, 368
BspPI GGATC 5 cut(s) 64, 120, 361, 370, 374
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 2 cut(s) 103, 520
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 6 cut(s) 69, 112, 234, 352, 366, 375
BssNI GRCGYC 2 cut(s) 384, 491
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 3 cut(s) 131, 161, 440
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 2 cut(s) 384, 491
BstC8I GCNNGC 2 cut(s) 282, 534
BstDEI CTNAG 1 cut(s) 507
BstDSI CCRYGG 1 cut(s) 403
BstHHI GCGC 2 cut(s) 273, 307
BstKTI GATC 6 cut(s) 72, 115, 237, 355, 369, 378
BstMBI GATC 6 cut(s) 69, 112, 234, 352, 366, 375
BstMWI GCNNNNNNNGC 4 cut(s) 277, 488, 533, 538
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 2 cut(s) 423, 536
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 234, 366
BstYI RGATCY 2 cut(s) 234, 366
BtgI CCRYGG 1 cut(s) 403
BtgZI GCGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 282, 534
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 115
CfoI GCGC 2 cut(s) 273, 307
CseI GACGC 1 cut(s) 480
CviAII CATG 7 cut(s) 116, 169, 268, 356, 380, 420, 533
DdeI CTNAG 1 cut(s) 507
DpnI GATC 6 cut(s) 71, 114, 236, 354, 368, 377
DpnII GATC 6 cut(s) 69, 112, 234, 352, 366, 375
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 2 cut(s) 377, 485
Eco57I CTGAAG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 54
FaeI CATG 7 cut(s) 119, 172, 271, 359, 383, 423, 536
FaiI YATR 7 cut(s) 117, 170, 269, 357, 381, 421, 534
FaqI GGGAC 1 cut(s) 325
FatI CATG 7 cut(s) 115, 168, 267, 355, 379, 419, 532
FauI CCCGC 1 cut(s) 79
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 9, 84, 336
Fsp4HI GCNGC 3 cut(s) 9, 84, 336
FspBI CTAG 3 cut(s) 15, 555, 567
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 2 cut(s) 272, 306
GluI GCNGC 3 cut(s) 9, 84, 336
GsaI CCCAGC 2 cut(s) 311, 540
GsuI CTGGAG 1 cut(s) 77
HgaI GACGC 1 cut(s) 480
HhaI GCGC 2 cut(s) 273, 307
Hin1I GRCGYC 2 cut(s) 384, 491
Hin1II CATG 7 cut(s) 119, 172, 271, 359, 383, 423, 536
Hin6I GCGC 2 cut(s) 271, 305
HinP1I GCGC 2 cut(s) 271, 305
HinfI GANTC 1 cut(s) 195
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 375, 550
Hpy188III TCNNGA 2 cut(s) 67, 116
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 396, 496
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 3 cut(s) 131, 161, 440
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 3 cut(s) 223, 343, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 277, 488, 533, 538
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 2 cut(s) 384, 491
Hsp92II CATG 7 cut(s) 119, 172, 271, 359, 383, 423, 536
HspAI GCGC 2 cut(s) 271, 305
Kzo9I GATC 6 cut(s) 69, 112, 234, 352, 366, 375
LmnI GCTCC 2 cut(s) 170, 529
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 204, 417
MaeI CTAG 3 cut(s) 15, 555, 567
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 434, 496
MalI GATC 6 cut(s) 71, 114, 236, 354, 368, 377
MboI GATC 6 cut(s) 69, 112, 234, 352, 366, 375
MboII GAAGA 3 cut(s) 53, 91, 136
MflI RGATCY 2 cut(s) 234, 366
MluCI AATT 2 cut(s) 261, 398
MmeI TCCRAC 2 cut(s) 9, 528
MseI TTAA 3 cut(s) 138, 287, 595
MslI CAYNNNNRTG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 277, 488, 533, 538
NdeII GATC 6 cut(s) 69, 112, 234, 352, 366, 375
NlaIII CATG 7 cut(s) 119, 172, 271, 359, 383, 423, 536
NlaIV GGNNCC 2 cut(s) 166, 368
NmuCI GTSAC 2 cut(s) 434, 496
NsbI TGCGCA 1 cut(s) 272
NspI RCATGY 2 cut(s) 423, 536
PaeI GCATGC 1 cut(s) 536
PagI TCATGA 1 cut(s) 115
PciI ACATGT 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 3 cut(s) 10, 85, 337
PscI ACATGT 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 54
PspFI CCCAGC 2 cut(s) 307, 536
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 166, 368
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 234, 366
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 138, 287, 595
SatI GCNGC 3 cut(s) 9, 84, 336
Sau3AI GATC 6 cut(s) 69, 112, 234, 352, 366, 375
ScrFI CCNGG 1 cut(s) 56
SetI ASST 5 cut(s) 203, 286, 387, 448, 579
SfaNI GCATC 2 cut(s) 204, 417
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 173
SpeI ACTAGT 1 cut(s) 554
SphI GCATGC 1 cut(s) 536
Sse9I AATT 2 cut(s) 261, 398
SsiI CCGC 8 cut(s) 8, 86, 245, 335, 388, 470, 527, 584
SspMI CTAG 3 cut(s) 15, 555, 567
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 3 cut(s) 131, 161, 440
TaiI ACGT 1 cut(s) 387
TaqII GACCGA 1 cut(s) 484
TasI AATT 2 cut(s) 261, 398
TauI GCSGC 2 cut(s) 11, 338
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 3 cut(s) 138, 287, 595
Tru9I TTAA 3 cut(s) 138, 287, 595
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 434, 496
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 2 cut(s) 434, 496
TspGWI ACGGA 4 cut(s) 62, 359, 361, 409
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 398
XceI RCATGY 2 cut(s) 423, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 3 cut(s) 15, 555, 567
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.