Rmu_sc0000047.1_g000017

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000047.1
OG0000123
Physical Location & Seq
Reverse (-)
137379 .. 138631
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000047.1_g000017.1.cds

Sequence Viewer

Length: 1143 bp
atggcagcggaggaagcagcgacgtctctcgccttgtcgatggaggtcgtagtgagcctagatgagggtggggatgcgatctgcgatccattcttttacttgtgtggacgtctgctaaccaagaaaccggtggttattccgtcgttctctgtagcgatgtccggaatttggcagatgaatgaaagggttttgatcgattatgacggtcttagggcttcgtcaaaggtccctctgcattttctggaggtgtgggtggcggtgactggtctgcgagttgccatgcgcaacgagcgggctcttacccggattggcaacttaatgggtacttttgtgagggttgatcaagtggcgctgcaaaggaaggaagccacccaaaggatcaggctgatctttgatgtgcgtcaccatgtctgggctcggcatacggtctacttcacgccagaggtctcggtggcacttgaattccgatttgagaaatgtcgtgggatctgtaagggatgtggctttttcacccatggaggcgataagtgtgataagaagatggtgaaggaggtggctgtggaggagccgggtttggttttgcagaaggtggtggctctgtcattgtcaaatgctacggaggaaacccggtcggtgtcccttgctggtgtggtactgccggcgtccggttgggaggatttggatctggctcccgcatctcctgccgtgcaggttaaggaaacgcagcatgcggtagggacgaagatggccaacccttgtttttcggcgggaaatcctaatttcaaattagggttgactgccgggccaggtttgcctattgatgttgggcagaatgcggttgggcctgcattgctggttttgcctagcgctgtgggtttgggctctggatcagctgggctggaagtaggggttgctggcctttttggacacccatcaaaggtgttgggtgtgaggaggcttcgtgaggaggagtggctcgaggatgggaagcgggcaaagctttctgatggcttagtcgagatcccaattacggatggaaagctatcgaagaagaagggtagaccccgtgggcatcggaacaagcctaaggttgtctctacatctacttcaggggtggatgctagggggcaacctgctgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

380

Amino Acids

40.75

Weight (kDa)

9.01

Isoelectric Point (pI)

32.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 26, 112
Acc16I TGCGCA 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 700
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 2 cut(s) 429, 1060
AccIII TCCGGA 1 cut(s) 161
AciI CCGC 8 cut(s) 8, 257, 292, 693, 731, 767, 836, 991
AclWI GGATC 6 cut(s) 80, 386, 494, 690, 895, 1015
AcoI YGGCCR 1 cut(s) 747
AcsI RAATTY 2 cut(s) 165, 461
AcuI CTGAAG 1 cut(s) 1092
AcyI GRCGYC 3 cut(s) 23, 109, 662
AfaI GTAC 2 cut(s) 325, 654
AfeI AGCGCT 1 cut(s) 868
AfiI CCNNNNNNNGG 7 cut(s) 64, 168, 375, 412, 665, 937, 1030
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 2 cut(s) 461, 784
AjnI CCWGG 1 cut(s) 805
AluBI AGCT 3 cut(s) 893, 1000, 1042
AluI AGCT 3 cut(s) 893, 1000, 1042
Alw26I GTCTC 3 cut(s) 30, 451, 1099
AlwI GGATC 6 cut(s) 80, 386, 494, 690, 895, 1015
Ama87I CYCGRG 1 cut(s) 977
Aor13HI TCCGGA 1 cut(s) 161
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 4 cut(s) 747, 803, 842, 916
ApeKI GCWGC 4 cut(s) 5, 17, 352, 724
ApoI RAATTY 2 cut(s) 165, 461
AsiGI ACCGGT 1 cut(s) 127
AspLEI GCGC 3 cut(s) 285, 352, 869
AspS9I GGNCC 3 cut(s) 226, 803, 842
AsuC2I CCSGG 4 cut(s) 304, 570, 628, 802
AsuHPI GGTGA 4 cut(s) 271, 395, 502, 556
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 1086
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BalI TGGCCA 1 cut(s) 749
BanII GRGCYC 3 cut(s) 298, 418, 884
BbvI GCAGC 4 cut(s) 17, 29, 339, 736
BccI CCATC 7 cut(s) 34, 535, 739, 940, 977, 1001, 1028
BceAI ACGGC 1 cut(s) 689
BciT130I CCWGG 1 cut(s) 807
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 4 cut(s) 304, 570, 628, 802
BcoDI GTCTC 3 cut(s) 30, 451, 1099
BfaI CTAG 3 cut(s) 59, 864, 1122
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 2 cut(s) 353, 870
BfuAI ACCTGC 1 cut(s) 700
BisI GCNGC 4 cut(s) 6, 18, 353, 725
BlsI GCNGC 4 cut(s) 7, 19, 354, 726
Bme1390I CCNGG 5 cut(s) 304, 570, 628, 802, 807
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 3 cut(s) 226, 803, 842
BmiI GGNNCC 3 cut(s) 228, 567, 690
BmrFI CCNGG 5 cut(s) 304, 570, 628, 802, 807
BmsI GCATC 4 cut(s) 64, 704, 1081, 1108
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 4 cut(s) 304, 570, 628, 802
Bsa29I ATCGAT 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 3 cut(s) 23, 109, 662
BsaI GGTCTC 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 514, 1066
BsaWI WCCGGW 3 cut(s) 127, 161, 665
BsaXI ACNNNNNCTCC 2 cut(s) 946, 976
Bsc4I CCNNNNNNNGG 7 cut(s) 64, 168, 375, 412, 665, 937, 1030
Bse118I RCCGGY 2 cut(s) 127, 658
Bse1I ACTGG 1 cut(s) 268
Bse21I CCTNAGG 1 cut(s) 1086
Bse3DI GCAATG 1 cut(s) 848
Bse8I GATNNNNATC 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 161
BseBI CCWGG 1 cut(s) 807
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 514, 1066
BseGI GGATG 5 cut(s) 79, 503, 988, 1039, 1123
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 7 cut(s) 64, 168, 375, 412, 665, 937, 1030
BseMI GCAATG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 4 cut(s) 578, 967, 980, 983
BseXI GCAGC 4 cut(s) 17, 29, 339, 736
BseYI CCCAGC 2 cut(s) 893, 1136
BsgI GTGCAG 1 cut(s) 728
Bsh1285I CGRYCG 1 cut(s) 632
BshFI GGCC 4 cut(s) 749, 805, 844, 918
BshTI ACCGGT 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 8 cut(s) 128, 162, 304, 569, 628, 659, 666, 801
BslFI GGGAC 3 cut(s) 212, 622, 751
BslI CCNNNNNNNGG 7 cut(s) 64, 168, 375, 412, 665, 937, 1030
BsmAI GTCTC 3 cut(s) 30, 451, 1099
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 3 cut(s) 212, 622, 751
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 4 cut(s) 749, 805, 844, 918
Bso31I GGTCTC 1 cut(s) 451
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 3 cut(s) 298, 418, 884
Bsp13I TCCGGA 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 514
BspACI CCGC 8 cut(s) 8, 257, 292, 693, 731, 767, 836, 991
BspANI GGCC 4 cut(s) 749, 805, 844, 918
BspDI ATCGAT 1 cut(s) 195
BspEI TCCGGA 1 cut(s) 161
BspLI GGNNCC 3 cut(s) 228, 567, 690
BspMI ACCTGC 1 cut(s) 700
BspPI GGATC 6 cut(s) 80, 386, 494, 690, 895, 1015
BspTNI GGTCTC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 2 cut(s) 127, 658
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 2 cut(s) 127, 658
BssECI CCNNGG 2 cut(s) 514, 1066
BssNI GRCGYC 3 cut(s) 23, 109, 662
BssT1I CCWWGG 1 cut(s) 514
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 206, 427
BstACI GRCGYC 3 cut(s) 23, 109, 662
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 6 cut(s) 294, 660, 729, 846, 916, 993
BstDEI CTNAG 3 cut(s) 209, 1012, 1086
BstDSI CCRYGG 2 cut(s) 514, 1066
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 5 cut(s) 79, 503, 988, 1039, 1123
BstH2I RGCGCY 2 cut(s) 353, 870
BstHHI GCGC 3 cut(s) 285, 352, 869
BstMAI GTCTC 3 cut(s) 30, 451, 1099
BstMCI CGRYCG 1 cut(s) 632
BstMWI GCNNNNNNNGC 7 cut(s) 14, 289, 701, 811, 850, 859, 997
BstNI CCWGG 1 cut(s) 807
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 5 cut(s) 302, 568, 626, 800, 805
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 17, 29, 339, 736
BstX2I RGATCY 3 cut(s) 486, 682, 1020
BstYI RGATCY 3 cut(s) 486, 682, 1020
Bsu15I ATCGAT 1 cut(s) 195
Bsu36I CCTNAGG 1 cut(s) 1086
BsuRI GGCC 4 cut(s) 749, 805, 844, 918
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 2 cut(s) 514, 1066
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 5 cut(s) 79, 503, 988, 1039, 1123
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 6 cut(s) 294, 660, 729, 846, 916, 993
CfoI GCGC 3 cut(s) 285, 352, 869
Cfr10I RCCGGY 2 cut(s) 127, 658
Cfr13I GGNCC 3 cut(s) 226, 803, 842
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 389, 651
Csp6I GTAC 2 cut(s) 324, 653
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 4 cut(s) 280, 407, 515, 728
CviQI GTAC 2 cut(s) 324, 653
DdeI CTNAG 3 cut(s) 209, 1012, 1086
EaeI YGGCCR 1 cut(s) 747
Eco130I CCWWGG 1 cut(s) 514
Eco24I GRGCYC 3 cut(s) 298, 418, 884
Eco31I GGTCTC 1 cut(s) 451
Eco47I GGWCC 1 cut(s) 226
Eco47III AGCGCT 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 1092
Eco81I CCTNAGG 1 cut(s) 1086
Eco88I CYCGRG 1 cut(s) 977
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 514
EcoT38I GRGCYC 3 cut(s) 298, 418, 884
ErhI CCWWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 4 cut(s) 283, 410, 518, 731
FaiI YATR 6 cut(s) 201, 281, 408, 423, 516, 729
FaqI GGGAC 3 cut(s) 212, 622, 751
FatI CATG 4 cut(s) 279, 406, 514, 727
FauI CCCGC 4 cut(s) 285, 700, 760, 984
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 2 cut(s) 429, 1060
Fnu4HI GCNGC 4 cut(s) 6, 18, 353, 725
FokI GGATG 5 cut(s) 86, 510, 995, 1046, 1130
FriOI GRGCYC 3 cut(s) 298, 418, 884
Fsp4HI GCNGC 4 cut(s) 6, 18, 353, 725
FspBI CTAG 3 cut(s) 59, 864, 1122
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 3 cut(s) 284, 351, 868
GluI GCNGC 4 cut(s) 6, 18, 353, 725
GsaI CCCAGC 2 cut(s) 897, 1140
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 2 cut(s) 353, 870
HaeIII GGCC 4 cut(s) 749, 805, 844, 918
HapII CCGG 8 cut(s) 128, 162, 304, 569, 628, 659, 666, 801
HgaI GACGC 2 cut(s) 389, 651
HhaI GCGC 3 cut(s) 285, 352, 869
Hin1I GRCGYC 3 cut(s) 23, 109, 662
Hin1II CATG 4 cut(s) 283, 410, 518, 731
Hin6I GCGC 3 cut(s) 283, 350, 867
HinP1I GCGC 3 cut(s) 283, 350, 867
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 1 cut(s) 998
HpaII CCGG 8 cut(s) 128, 162, 304, 569, 628, 659, 666, 801
HphI GGTGA 4 cut(s) 271, 395, 502, 556
Hpy166II GTNNAC 4 cut(s) 107, 430, 795, 1061
Hpy188I TCNGA 3 cut(s) 467, 1006, 1077
Hpy188III TCNNGA 5 cut(s) 162, 242, 885, 962, 1018
Hpy8I GTNNAC 4 cut(s) 107, 430, 795, 1061
Hpy99I CGWCG 2 cut(s) 25, 145
HpyAV CCTTC 4 cut(s) 355, 541, 580, 1048
HpyCH4III ACNGT 2 cut(s) 206, 427
HpyCH4IV ACGT 2 cut(s) 23, 109
HpyCH4V TGCA 5 cut(s) 235, 355, 583, 709, 848
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 289, 701, 811, 850, 859, 997
HpyF3I CTNAG 3 cut(s) 209, 1012, 1086
HpySE526I ACGT 2 cut(s) 23, 109
Hsp92I GRCGYC 3 cut(s) 23, 109, 662
Hsp92II CATG 4 cut(s) 283, 410, 518, 731
HspAI GCGC 3 cut(s) 283, 350, 867
Kpn2I TCCGGA 1 cut(s) 161
KroI GCCGGC 1 cut(s) 658
KroNI GCCGGC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 340
LmnI GCTCC 2 cut(s) 565, 694
Lsp1109I GCAGC 4 cut(s) 17, 29, 339, 736
LweI GCATC 4 cut(s) 64, 704, 1081, 1108
MaeI CTAG 3 cut(s) 59, 864, 1122
MaeII ACGT 2 cut(s) 23, 109
MaeIII GTNAC 2 cut(s) 259, 401
MbiI CCGCTC 1 cut(s) 292
MboII GAAGA 4 cut(s) 550, 754, 1060, 1063
MflI RGATCY 3 cut(s) 486, 682, 1020
MhlI GDGCHC 3 cut(s) 298, 418, 884
MlsI TGGCCA 1 cut(s) 749
MluCI AATT 5 cut(s) 165, 461, 778, 785, 1026
MluNI TGGCCA 1 cut(s) 749
Mox20I TGGCCA 1 cut(s) 749
MroI TCCGGA 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 658
MscI TGGCCA 1 cut(s) 749
MseI TTAA 2 cut(s) 317, 714
Msp20I TGGCCA 1 cut(s) 749
MspA1I CMGCKG 2 cut(s) 8, 893
MspI CCGG 8 cut(s) 128, 162, 304, 569, 628, 659, 666, 801
MspR9I CCNGG 5 cut(s) 304, 570, 628, 802, 807
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 1 cut(s) 807
MwoI GCNNNNNNNGC 7 cut(s) 14, 289, 701, 811, 850, 859, 997
NaeI GCCGGC 1 cut(s) 660
NciI CCSGG 4 cut(s) 304, 570, 628, 802
NcoI CCATGG 1 cut(s) 514
NgoMIV GCCGGC 1 cut(s) 658
NlaIII CATG 4 cut(s) 283, 410, 518, 731
NlaIV GGNNCC 3 cut(s) 228, 567, 690
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 2 cut(s) 259, 401
NsbI TGCGCA 1 cut(s) 284
NspI RCATGY 1 cut(s) 731
PaeI GCATGC 1 cut(s) 731
PaeR7I CTCGAG 1 cut(s) 977
PctI GAATGC 1 cut(s) 838
PdiI GCCGGC 1 cut(s) 660
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 4 cut(s) 7, 19, 354, 726
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 805
PspFI CCCAGC 2 cut(s) 893, 1136
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 3 cut(s) 228, 567, 690
PspPI GGNCC 3 cut(s) 226, 803, 842
PspPPI RGGWCCY 1 cut(s) 226
PspXI VCTCGAGB 1 cut(s) 977
PsuI RGATCY 3 cut(s) 486, 682, 1020
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 2 cut(s) 325, 654
RsaNI GTAC 2 cut(s) 324, 653
SaqAI TTAA 2 cut(s) 317, 714
SatI GCNGC 4 cut(s) 6, 18, 353, 725
Sau96I GGNCC 3 cut(s) 226, 803, 842
ScrFI CCNGG 5 cut(s) 304, 570, 628, 802, 807
SduI GDGCHC 3 cut(s) 298, 418, 884
SfaNI GCATC 4 cut(s) 64, 704, 1081, 1108
SfcI CTRYAG 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 977
SinI GGWCC 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 977
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
SphI GCATGC 1 cut(s) 731
Sse9I AATT 5 cut(s) 165, 461, 778, 785, 1026
SsiI CCGC 8 cut(s) 8, 257, 292, 693, 731, 767, 836, 991
SspMI CTAG 3 cut(s) 59, 864, 1122
StyD4I CCNGG 5 cut(s) 302, 568, 626, 800, 805
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 206, 427
TaiI ACGT 2 cut(s) 26, 112
TaqI TCGA 5 cut(s) 38, 195, 978, 1017, 1046
TasI AATT 5 cut(s) 165, 461, 778, 785, 1026
Tru1I TTAA 2 cut(s) 317, 714
Tru9I TTAA 2 cut(s) 317, 714
TseFI GTSAC 2 cut(s) 259, 401
TseI GCWGC 4 cut(s) 5, 17, 352, 724
Tsp45I GTSAC 2 cut(s) 259, 401
TspDTI ATGAA 2 cut(s) 191, 195
TspGWI ACGGA 3 cut(s) 129, 632, 1046
VpaK11BI GGWCC 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 2 cut(s) 165, 461
XceI RCATGY 1 cut(s) 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 977
XmiI GTMKAC 2 cut(s) 429, 1060
XspI CTAG 3 cut(s) 59, 864, 1122
ZraI GACGTC 2 cut(s) 24, 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.