Rmu_sc0005378.1_g000023

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005378.1
OG0000123
Physical Location & Seq
Forward (+)
83165 .. 83488
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005378.1_g000023.1.cds

Sequence Viewer

Length: 324 bp
atggaagcggagggtgcagcatcgtctcttgccttgtcggaagaggccgtagtgagcctggttggggaaggggatgtgatccaagacccattcttttacctgtgtgggcgtttgctatctaagaaaccggtggttattccattattctcggcagcgatgtccaatgtgtggcggctgaatgagagagttttaatccgtggagaggacggagggatcttcgtgttccaattcaaggagaaggaggtgaagaaccgggttcttcatggaggcccatggtattacaacaactcgatgctattattggcagattatgatggtgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

107

Amino Acids

11.88

Weight (kDa)

4.89

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AciI CCGC 2 cut(s) 8, 172
AclWI GGATC 2 cut(s) 73, 221
AfiI CCNNNNNNNGG 4 cut(s) 64, 168, 202, 232
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 73, 221
AoxI GGCC 2 cut(s) 45, 268
ApeKI GCWGC 2 cut(s) 17, 152
AsiGI ACCGGT 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 256
BbvI GCAGC 2 cut(s) 29, 164
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 3 cut(s) 18, 153, 173
BlsI GCNGC 3 cut(s) 19, 154, 174
Bme1390I CCNGG 2 cut(s) 59, 254
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 59, 254
BmsI GCATC 2 cut(s) 29, 282
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 196, 272
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 168, 202, 232
Bse118I RCCGGY 1 cut(s) 127
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 196, 272
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 4 cut(s) 64, 168, 202, 232
BseXI GCAGC 2 cut(s) 29, 164
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 47, 270
BshTI ACCGGT 1 cut(s) 127
BsiSI CCGG 2 cut(s) 128, 253
BslI CCNNNNNNNGG 4 cut(s) 64, 168, 202, 232
BsmAI GTCTC 1 cut(s) 30
BsmBI CGTCTC 1 cut(s) 30
BsnI GGCC 2 cut(s) 47, 270
Bsp143I GATC 2 cut(s) 78, 213
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 2 cut(s) 8, 172
BspANI GGCC 2 cut(s) 47, 270
BspPI GGATC 2 cut(s) 73, 221
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 196, 272
BssMI GATC 2 cut(s) 78, 213
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 2 cut(s) 196, 272
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 2 cut(s) 81, 216
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 78, 213
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 252
BstV1I GCAGC 2 cut(s) 29, 164
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 2 cut(s) 47, 270
BtgI CCRYGG 2 cut(s) 196, 272
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 269
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 2 cut(s) 263, 273
CviJI RGCY 4 cut(s) 47, 57, 175, 270
CviKI_1 RGCY 4 cut(s) 47, 57, 175, 270
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 80, 215
DpnII GATC 2 cut(s) 78, 213
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 2 cut(s) 266, 276
FaiI YATR 3 cut(s) 264, 274, 312
FatI CATG 2 cut(s) 262, 272
Fnu4HI GCNGC 3 cut(s) 18, 153, 173
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 18, 153, 173
GluI GCNGC 3 cut(s) 18, 153, 173
HaeIII GGCC 2 cut(s) 47, 270
HapII CCGG 2 cut(s) 128, 253
Hin1II CATG 2 cut(s) 266, 276
HpaII CCGG 2 cut(s) 128, 253
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 62, 232
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 2 cut(s) 266, 276
Kzo9I GATC 2 cut(s) 78, 213
LpnPI CCDG 5 cut(s) 44, 71, 113, 141, 266
Lsp1109I GCAGC 2 cut(s) 29, 164
LweI GCATC 2 cut(s) 29, 282
MalI GATC 2 cut(s) 80, 215
MboI GATC 2 cut(s) 78, 213
MboII GAAGA 4 cut(s) 53, 208, 251, 259
MflI RGATCY 1 cut(s) 213
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 6 cut(s) 4, 37, 196, 203, 235, 260
MseI TTAA 1 cut(s) 191
MspI CCGG 2 cut(s) 128, 253
MspR9I CCNGG 2 cut(s) 59, 254
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 254
NcoI CCATGG 1 cut(s) 272
NdeII GATC 2 cut(s) 78, 213
NlaIII CATG 2 cut(s) 266, 276
NmeAIII GCCGAG 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 3 cut(s) 19, 154, 174
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 213
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 3 cut(s) 18, 153, 173
Sau3AI GATC 2 cut(s) 78, 213
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 59, 254
SetI ASST 2 cut(s) 102, 246
SfaNI GCATC 2 cut(s) 29, 282
Sse9I AATT 1 cut(s) 227
SsiI CCGC 2 cut(s) 8, 172
StyD4I CCNGG 2 cut(s) 57, 252
StyI CCWWGG 1 cut(s) 272
TaqI TCGA 1 cut(s) 290
TasI AATT 1 cut(s) 227
TauI GCSGC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseI GCWGC 2 cut(s) 17, 152
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 2 cut(s) 185, 222
Van91I CCANNNNNTGG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.