ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 221 |
| AccB1I | GGYRCC | 1 cut(s) | 340 |
| AccII | CGCG | 1 cut(s) | 464 |
| AciI | CCGC | 7 cut(s) | 8, 131, 155, 338, 464, 535, 538 |
| AclI | AACGTT | 1 cut(s) | 168 |
| AclWI | GGATC | 1 cut(s) | 190 |
| AcoI | YGGCCR | 1 cut(s) | 109 |
| AcsI | RAATTY | 1 cut(s) | 522 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 205, 235, 268, 358 |
| AgsI | TTSAA | 1 cut(s) | 235 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 429, 461 |
| AluBI | AGCT | 1 cut(s) | 308 |
| AluI | AGCT | 1 cut(s) | 308 |
| AlwI | GGATC | 1 cut(s) | 190 |
| AoxI | GGCC | 1 cut(s) | 109 |
| ApeKI | GCWGC | 2 cut(s) | 301, 532 |
| ApoI | RAATTY | 1 cut(s) | 522 |
| AspLEI | GCGC | 2 cut(s) | 464, 532 |
| AspS9I | GGNCC | 3 cut(s) | 259, 272, 484 |
| AsuHPI | GGTGA | 4 cut(s) | 148, 259, 511, 543 |
| AsuNHI | GCTAGC | 1 cut(s) | 304 |
| AvaII | GGWCC | 3 cut(s) | 259, 272, 484 |
| BanI | GGYRCC | 1 cut(s) | 340 |
| BbsI | GAAGAC | 1 cut(s) | 217 |
| BbvI | GCAGC | 2 cut(s) | 288, 544 |
| BccI | CCATC | 1 cut(s) | 311 |
| BfaI | CTAG | 1 cut(s) | 305 |
| BisI | GCNGC | 5 cut(s) | 156, 302, 339, 533, 536 |
| BlsI | GCNGC | 5 cut(s) | 157, 303, 340, 534, 537 |
| Bme18I | GGWCC | 3 cut(s) | 259, 272, 484 |
| BmgT120I | GGNCC | 3 cut(s) | 259, 272, 484 |
| BmiI | GGNNCC | 5 cut(s) | 27, 260, 273, 342, 486 |
| BmrI | ACTGGG | 1 cut(s) | 276 |
| BmsI | GCATC | 2 cut(s) | 325, 330 |
| BmtI | GCTAGC | 1 cut(s) | 308 |
| BmuI | ACTGGG | 1 cut(s) | 276 |
| BpiI | GAAGAC | 1 cut(s) | 217 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 1 cut(s) | 275 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 63, 93, 275, 305, 429, 459 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 205, 235, 268, 358 |
| Bse118I | RCCGGY | 1 cut(s) | 111 |
| Bse1I | ACTGG | 1 cut(s) | 271 |
| Bse3DI | GCAATG | 2 cut(s) | 27, 387 |
| BseDI | CCNNGG | 1 cut(s) | 275 |
| BseGI | GGATG | 3 cut(s) | 16, 217, 514 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 205, 235, 268, 358 |
| BseMI | GCAATG | 2 cut(s) | 27, 387 |
| BseMII | CTCAG | 1 cut(s) | 165 |
| BseNI | ACTGG | 1 cut(s) | 271 |
| BseRI | GAGGAG | 4 cut(s) | 18, 59, 84, 221 |
| BseXI | GCAGC | 2 cut(s) | 288, 544 |
| BsgI | GTGCAG | 1 cut(s) | 488 |
| Bsh1236I | CGCG | 1 cut(s) | 464 |
| BshFI | GGCC | 1 cut(s) | 111 |
| BshNI | GGYRCC | 1 cut(s) | 340 |
| BsiSI | CCGG | 1 cut(s) | 112 |
| BslFI | GGGAC | 1 cut(s) | 470 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 205, 235, 268, 358 |
| BsmFI | GGGAC | 1 cut(s) | 470 |
| BsnI | GGCC | 1 cut(s) | 111 |
| Bsp143I | GATC | 3 cut(s) | 159, 195, 328 |
| Bsp19I | CCATGG | 1 cut(s) | 275 |
| BspACI | CCGC | 7 cut(s) | 8, 131, 155, 338, 464, 535, 538 |
| BspANI | GGCC | 1 cut(s) | 111 |
| BspCNI | CTCAG | 1 cut(s) | 164 |
| BspFNI | CGCG | 1 cut(s) | 464 |
| BspLI | GGNNCC | 5 cut(s) | 27, 260, 273, 342, 486 |
| BspOI | GCTAGC | 1 cut(s) | 308 |
| BspPI | GGATC | 1 cut(s) | 190 |
| BspT107I | GGYRCC | 1 cut(s) | 340 |
| BsrDI | GCAATG | 2 cut(s) | 27, 387 |
| BsrFI | RCCGGY | 1 cut(s) | 111 |
| BsrI | ACTGG | 1 cut(s) | 271 |
| BssAI | RCCGGY | 1 cut(s) | 111 |
| BssECI | CCNNGG | 1 cut(s) | 275 |
| BssMI | GATC | 3 cut(s) | 159, 195, 328 |
| BssT1I | CCWWGG | 1 cut(s) | 275 |
| Bst4CI | ACNGT | 1 cut(s) | 345 |
| BstC8I | GCNNGC | 2 cut(s) | 113, 306 |
| BstDEI | CTNAG | 2 cut(s) | 123, 151 |
| BstDSI | CCRYGG | 1 cut(s) | 275 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 203, 356 |
| BstF5I | GGATG | 3 cut(s) | 16, 217, 514 |
| BstFNI | CGCG | 1 cut(s) | 464 |
| BstHHI | GCGC | 2 cut(s) | 464, 532 |
| BstKTI | GATC | 3 cut(s) | 162, 198, 331 |
| BstMBI | GATC | 3 cut(s) | 159, 195, 328 |
| BstUI | CGCG | 1 cut(s) | 464 |
| BstV1I | GCAGC | 2 cut(s) | 288, 544 |
| BstV2I | GAAGAC | 1 cut(s) | 217 |
| BsuRI | GGCC | 1 cut(s) | 111 |
| BtgI | CCRYGG | 1 cut(s) | 275 |
| BtsCI | GGATG | 3 cut(s) | 16, 217, 514 |
| BtsI | GCAGTG | 1 cut(s) | 378 |
| BtsIMutI | CAGTG | 2 cut(s) | 378, 488 |
| Cac8I | GCNNGC | 2 cut(s) | 113, 306 |
| CfoI | GCGC | 2 cut(s) | 464, 532 |
| Cfr10I | RCCGGY | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 3 cut(s) | 259, 272, 484 |
| CviAII | CATG | 3 cut(s) | 86, 276, 295 |
| CviJI | RGCY | 7 cut(s) | 26, 50, 60, 111, 115, 308, 410 |
| CviKI_1 | RGCY | 7 cut(s) | 26, 50, 60, 111, 115, 308, 410 |
| DdeI | CTNAG | 2 cut(s) | 123, 151 |
| DpnI | GATC | 3 cut(s) | 161, 197, 330 |
| DpnII | GATC | 3 cut(s) | 159, 195, 328 |
| DraI | TTTAAA | 1 cut(s) | 180 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 221 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 221 |
| EaeI | YGGCCR | 1 cut(s) | 109 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 275 |
| Eco47I | GGWCC | 3 cut(s) | 259, 272, 484 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 203, 356 |
| EcoO109I | RGGNCCY | 1 cut(s) | 259 |
| EcoT14I | CCWWGG | 1 cut(s) | 275 |
| ErhI | CCWWGG | 1 cut(s) | 275 |
| FaeI | CATG | 3 cut(s) | 89, 279, 298 |
| FaiI | YATR | 6 cut(s) | 87, 106, 277, 296, 315, 395 |
| FaqI | GGGAC | 1 cut(s) | 470 |
| FatI | CATG | 3 cut(s) | 85, 275, 294 |
| Fnu4HI | GCNGC | 5 cut(s) | 156, 302, 339, 533, 536 |
| FokI | GGATG | 3 cut(s) | 23, 224, 521 |
| Fsp4HI | GCNGC | 5 cut(s) | 156, 302, 339, 533, 536 |
| FspBI | CTAG | 1 cut(s) | 305 |
| GlaI | GCGC | 2 cut(s) | 463, 531 |
| GluI | GCNGC | 5 cut(s) | 156, 302, 339, 533, 536 |
| HaeIII | GGCC | 1 cut(s) | 111 |
| HapII | CCGG | 1 cut(s) | 112 |
| HhaI | GCGC | 2 cut(s) | 464, 532 |
| Hin1II | CATG | 3 cut(s) | 89, 279, 298 |
| Hin6I | GCGC | 2 cut(s) | 462, 530 |
| HinP1I | GCGC | 2 cut(s) | 462, 530 |
| HinfI | GANTC | 6 cut(s) | 89, 139, 189, 253, 493, 502 |
| HpaII | CCGG | 1 cut(s) | 112 |
| HphI | GGTGA | 4 cut(s) | 148, 259, 511, 543 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 328, 405, 425 |
| Hpy188III | TCNNGA | 3 cut(s) | 193, 332, 506 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| Hpy99I | CGWCG | 1 cut(s) | 148 |
| HpyAV | CCTTC | 2 cut(s) | 121, 370 |
| HpyCH4III | ACNGT | 1 cut(s) | 345 |
| HpyCH4IV | ACGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 3 cut(s) | 202, 349, 469 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 151 |
| HpySE526I | ACGT | 1 cut(s) | 168 |
| Hsp92II | CATG | 3 cut(s) | 89, 279, 298 |
| HspAI | GCGC | 2 cut(s) | 462, 530 |
| KroI | GCCGGC | 1 cut(s) | 111 |
| KroNI | GCCGGC | 1 cut(s) | 113 |
| Kzo9I | GATC | 3 cut(s) | 159, 195, 328 |
| LmnI | GCTCC | 2 cut(s) | 31, 238 |
| LpnPI | CCDG | 6 cut(s) | 125, 212, 227, 252, 443, 491 |
| Lsp1109I | GCAGC | 2 cut(s) | 288, 544 |
| LweI | GCATC | 2 cut(s) | 325, 330 |
| MaeI | CTAG | 1 cut(s) | 305 |
| MaeII | ACGT | 1 cut(s) | 168 |
| MalI | GATC | 3 cut(s) | 161, 197, 330 |
| MboI | GATC | 3 cut(s) | 159, 195, 328 |
| MboII | GAAGA | 4 cut(s) | 86, 88, 217, 262 |
| MluCI | AATT | 2 cut(s) | 230, 522 |
| MlyI | GAGTC | 1 cut(s) | 198 |
| MmeI | TCCRAC | 1 cut(s) | 46 |
| MroNI | GCCGGC | 1 cut(s) | 111 |
| MseI | TTAA | 3 cut(s) | 179, 413, 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 392 |
| MspA1I | CMGCKG | 2 cut(s) | 155, 535 |
| MspI | CCGG | 1 cut(s) | 112 |
| MvnI | CGCG | 1 cut(s) | 464 |
| NaeI | GCCGGC | 1 cut(s) | 113 |
| NcoI | CCATGG | 1 cut(s) | 275 |
| NdeII | GATC | 3 cut(s) | 159, 195, 328 |
| NgoMIV | GCCGGC | 1 cut(s) | 111 |
| NheI | GCTAGC | 1 cut(s) | 304 |
| NlaIII | CATG | 3 cut(s) | 89, 279, 298 |
| NlaIV | GGNNCC | 5 cut(s) | 27, 260, 273, 342, 486 |
| PdiI | GCCGGC | 1 cut(s) | 113 |
| PfeI | GAWTC | 5 cut(s) | 89, 139, 253, 493, 502 |
| PflFI | GACNNNGTC | 1 cut(s) | 482 |
| PkrI | GCNGC | 5 cut(s) | 157, 303, 340, 534, 537 |
| PleI | GAGTC | 1 cut(s) | 197 |
| PpsI | GAGTC | 1 cut(s) | 197 |
| PpuMI | RGGWCCY | 1 cut(s) | 259 |
| Psp1406I | AACGTT | 1 cut(s) | 168 |
| Psp5II | RGGWCCY | 1 cut(s) | 259 |
| PspN4I | GGNNCC | 5 cut(s) | 27, 260, 273, 342, 486 |
| PspPI | GGNCC | 3 cut(s) | 259, 272, 484 |
| PspPPI | RGGWCCY | 1 cut(s) | 259 |
| PsyI | GACNNNGTC | 1 cut(s) | 482 |
| RseI | CAYNNNNRTG | 1 cut(s) | 392 |
| SaqAI | TTAA | 3 cut(s) | 179, 413, 453 |
| SatI | GCNGC | 5 cut(s) | 156, 302, 339, 533, 536 |
| Sau3AI | GATC | 3 cut(s) | 159, 195, 328 |
| Sau96I | GGNCC | 3 cut(s) | 259, 272, 484 |
| SchI | GAGTC | 1 cut(s) | 198 |
| SetI | ASST | 6 cut(s) | 105, 171, 249, 310, 354, 363 |
| SfaNI | GCATC | 2 cut(s) | 325, 330 |
| SinI | GGWCC | 3 cut(s) | 259, 272, 484 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 392 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| Sse9I | AATT | 2 cut(s) | 230, 522 |
| SsiI | CCGC | 7 cut(s) | 8, 131, 155, 338, 464, 535, 538 |
| SspMI | CTAG | 1 cut(s) | 305 |
| StyI | CCWWGG | 1 cut(s) | 275 |
| TaaI | ACNGT | 1 cut(s) | 345 |
| TaiI | ACGT | 1 cut(s) | 171 |
| TaqI | TCGA | 1 cut(s) | 448 |
| TasI | AATT | 2 cut(s) | 230, 522 |
| TauI | GCSGC | 3 cut(s) | 158, 341, 538 |
| TfiI | GAWTC | 5 cut(s) | 89, 139, 253, 493, 502 |
| Tru1I | TTAA | 3 cut(s) | 179, 413, 453 |
| Tru9I | TTAA | 3 cut(s) | 179, 413, 453 |
| TscAI | CASTG | 2 cut(s) | 378, 495 |
| TseI | GCWGC | 2 cut(s) | 301, 532 |
| TspGWI | ACGGA | 1 cut(s) | 132 |
| TspRI | CASTG | 2 cut(s) | 378, 495 |
| Tth111I | GACNNNGTC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 3 cut(s) | 259, 272, 484 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 203, 356 |
| XapI | RAATTY | 1 cut(s) | 522 |
| XspI | CTAG | 1 cut(s) | 305 |