Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 365 |
| AccB1I | GGYRCC | 1 cut(s) | 484 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 315 |
| AciI | CCGC | 8 cut(s) | 5, 8, 119, 143, 452, 482, 529, 541 |
| AclWI | GGATC | 3 cut(s) | 334, 410, 423 |
| AcoI | YGGCCR | 1 cut(s) | 97 |
| AcyI | GRCGYC | 1 cut(s) | 485 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 164, 315, 349, 379, 481 |
| AgsI | TTSAA | 1 cut(s) | 325 |
| AjnI | CCWGG | 1 cut(s) | 163 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 407, 439 |
| AluBI | AGCT | 2 cut(s) | 184, 208 |
| AluI | AGCT | 2 cut(s) | 184, 208 |
| Alw21I | GWGCWC | 1 cut(s) | 186 |
| Alw26I | GTCTC | 1 cut(s) | 472 |
| AlwI | GGATC | 3 cut(s) | 334, 410, 423 |
| Ama87I | CYCGRG | 1 cut(s) | 409 |
| AoxI | GGCC | 2 cut(s) | 36, 97 |
| AspLEI | GCGC | 1 cut(s) | 487 |
| AsuHPI | GGTGA | 3 cut(s) | 55, 191, 403 |
| AsuII | TTCGAA | 1 cut(s) | 30 |
| AvaI | CYCGRG | 1 cut(s) | 409 |
| BamHI | GGATCC | 1 cut(s) | 415 |
| BanI | GGYRCC | 1 cut(s) | 484 |
| BanII | GRGCYC | 1 cut(s) | 186 |
| BbsI | GAAGAC | 1 cut(s) | 361 |
| Bbv12I | GWGCWC | 1 cut(s) | 186 |
| BccI | CCATC | 1 cut(s) | 379 |
| BceAI | ACGGC | 1 cut(s) | 23 |
| BciT130I | CCWGG | 1 cut(s) | 165 |
| BcoDI | GTCTC | 1 cut(s) | 472 |
| BfaI | CTAG | 1 cut(s) | 476 |
| BfoI | RGCGCY | 1 cut(s) | 488 |
| BisI | GCNGC | 3 cut(s) | 6, 144, 483 |
| BlsI | GCNGC | 3 cut(s) | 7, 145, 484 |
| Bme1390I | CCNGG | 1 cut(s) | 165 |
| BmeT110I | CYCGRG | 1 cut(s) | 409 |
| BmiI | GGNNCC | 3 cut(s) | 15, 417, 486 |
| BmrFI | CCNGG | 1 cut(s) | 165 |
| BmrI | ACTGGG | 1 cut(s) | 587 |
| BmsI | GCATC | 2 cut(s) | 55, 528 |
| BmuI | ACTGGG | 1 cut(s) | 587 |
| BoxI | GACNNNNGTC | 1 cut(s) | 106 |
| BpiI | GAAGAC | 1 cut(s) | 361 |
| Bpu14I | TTCGAA | 1 cut(s) | 30 |
| BpuEI | CTTGAG | 1 cut(s) | 521 |
| BsaHI | GRCGYC | 1 cut(s) | 485 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 419 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 480, 510 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 164, 315, 349, 379, 481 |
| Bse1I | ACTGG | 1 cut(s) | 582 |
| BseBI | CCWGG | 1 cut(s) | 165 |
| BseDI | CCNNGG | 2 cut(s) | 39, 419 |
| BseGI | GGATG | 2 cut(s) | 70, 361 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 164, 315, 349, 379, 481 |
| BseMII | CTCAG | 2 cut(s) | 305, 483 |
| BseNI | ACTGG | 1 cut(s) | 582 |
| BseRI | GAGGAG | 1 cut(s) | 365 |
| BshFI | GGCC | 2 cut(s) | 38, 99 |
| BshNI | GGYRCC | 1 cut(s) | 484 |
| BsiHKAI | GWGCWC | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 1 cut(s) | 409 |
| BsiSI | CCGG | 1 cut(s) | 343 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 164, 315, 349, 379, 481 |
| BsmAI | GTCTC | 1 cut(s) | 472 |
| BsnI | GGCC | 2 cut(s) | 38, 99 |
| BsoBI | CYCGRG | 1 cut(s) | 409 |
| Bsp119I | TTCGAA | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 1 cut(s) | 186 |
| Bsp143I | GATC | 3 cut(s) | 303, 339, 415 |
| BspACI | CCGC | 8 cut(s) | 5, 8, 119, 143, 452, 482, 529, 541 |
| BspANI | GGCC | 2 cut(s) | 38, 99 |
| BspCNI | CTCAG | 2 cut(s) | 304, 482 |
| BspLI | GGNNCC | 3 cut(s) | 15, 417, 486 |
| BspPI | GGATC | 3 cut(s) | 334, 410, 423 |
| BspT104I | TTCGAA | 1 cut(s) | 30 |
| BspT107I | GGYRCC | 1 cut(s) | 484 |
| BsrI | ACTGG | 1 cut(s) | 582 |
| BssECI | CCNNGG | 2 cut(s) | 39, 419 |
| BssMI | GATC | 3 cut(s) | 303, 339, 415 |
| BssNI | GRCGYC | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 1 cut(s) | 419 |
| Bst2UI | CCWGG | 1 cut(s) | 165 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| Bst6I | CTCTTC | 2 cut(s) | 27, 221 |
| BstACI | GRCGYC | 1 cut(s) | 485 |
| BstBI | TTCGAA | 1 cut(s) | 30 |
| BstC8I | GCNNGC | 1 cut(s) | 450 |
| BstDEI | CTNAG | 2 cut(s) | 291, 469 |
| BstDSI | CCRYGG | 1 cut(s) | 39 |
| BstF5I | GGATG | 2 cut(s) | 70, 361 |
| BstH2I | RGCGCY | 1 cut(s) | 488 |
| BstHHI | GCGC | 1 cut(s) | 487 |
| BstKTI | GATC | 3 cut(s) | 306, 342, 418 |
| BstMAI | GTCTC | 1 cut(s) | 472 |
| BstMBI | GATC | 3 cut(s) | 303, 339, 415 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 1 cut(s) | 165 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 106 |
| BstSCI | CCNGG | 1 cut(s) | 163 |
| BstV2I | GAAGAC | 1 cut(s) | 361 |
| BstX2I | RGATCY | 1 cut(s) | 415 |
| BstYI | RGATCY | 1 cut(s) | 415 |
| BsuRI | GGCC | 2 cut(s) | 38, 99 |
| BtgI | CCRYGG | 1 cut(s) | 39 |
| BtgZI | GCGATG | 2 cut(s) | 161, 551 |
| BtsCI | GGATG | 2 cut(s) | 70, 361 |
| BtsIMutI | CAGTG | 1 cut(s) | 575 |
| Cac8I | GCNNGC | 1 cut(s) | 450 |
| CfoI | GCGC | 1 cut(s) | 487 |
| CviAII | CATG | 2 cut(s) | 74, 439 |
| DdeI | CTNAG | 2 cut(s) | 291, 469 |
| DinI | GGCGCC | 1 cut(s) | 486 |
| DpnI | GATC | 3 cut(s) | 305, 341, 417 |
| DpnII | GATC | 3 cut(s) | 303, 339, 415 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 365 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 365 |
| EaeI | YGGCCR | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 2 cut(s) | 27, 221 |
| EarI | CTCTTC | 2 cut(s) | 27, 221 |
| EciI | GGCGGA | 1 cut(s) | 467 |
| Ecl136II | GAGCTC | 1 cut(s) | 184 |
| Eco130I | CCWWGG | 1 cut(s) | 419 |
| Eco24I | GRGCYC | 1 cut(s) | 186 |
| Eco53kI | GAGCTC | 1 cut(s) | 184 |
| Eco88I | CYCGRG | 1 cut(s) | 409 |
| EcoICRI | GAGCTC | 1 cut(s) | 184 |
| EcoRII | CCWGG | 1 cut(s) | 163 |
| EcoT14I | CCWWGG | 1 cut(s) | 419 |
| EcoT38I | GRGCYC | 1 cut(s) | 186 |
| EgeI | GGCGCC | 1 cut(s) | 486 |
| EheI | GGCGCC | 1 cut(s) | 486 |
| ErhI | CCWWGG | 1 cut(s) | 419 |
| FaeI | CATG | 2 cut(s) | 77, 442 |
| FaiI | YATR | 5 cut(s) | 75, 247, 249, 429, 440 |
| FatI | CATG | 2 cut(s) | 73, 438 |
| FauNDI | CATATG | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 144, 483 |
| FokI | GGATG | 2 cut(s) | 77, 368 |
| FriOI | GRGCYC | 1 cut(s) | 186 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 144, 483 |
| FspBI | CTAG | 1 cut(s) | 476 |
| GlaI | GCGC | 1 cut(s) | 486 |
| GluI | GCNGC | 3 cut(s) | 6, 144, 483 |
| HaeII | RGCGCY | 1 cut(s) | 488 |
| HaeIII | GGCC | 2 cut(s) | 38, 99 |
| HapII | CCGG | 1 cut(s) | 343 |
| HhaI | GCGC | 1 cut(s) | 487 |
| Hin1I | GRCGYC | 1 cut(s) | 485 |
| Hin1II | CATG | 2 cut(s) | 77, 442 |
| Hin6I | GCGC | 1 cut(s) | 485 |
| HinP1I | GCGC | 1 cut(s) | 485 |
| HinfI | GANTC | 5 cut(s) | 46, 77, 397, 465, 570 |
| HpaII | CCGG | 1 cut(s) | 343 |
| HphI | GGTGA | 3 cut(s) | 55, 191, 403 |
| Hpy188I | TCNGA | 2 cut(s) | 472, 569 |
| Hpy188III | TCNNGA | 1 cut(s) | 409 |
| Hpy99I | CGWCG | 1 cut(s) | 136 |
| HpyAV | CCTTC | 2 cut(s) | 109, 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 2 cut(s) | 291, 469 |
| Hsp92I | GRCGYC | 1 cut(s) | 485 |
| Hsp92II | CATG | 2 cut(s) | 77, 442 |
| HspAI | GCGC | 1 cut(s) | 485 |
| KasI | GGCGCC | 1 cut(s) | 484 |
| Kzo9I | GATC | 3 cut(s) | 303, 339, 415 |
| LmnI | GCTCC | 2 cut(s) | 19, 205 |
| LpnPI | CCDG | 7 cut(s) | 150, 177, 203, 332, 356, 434, 563 |
| LweI | GCATC | 2 cut(s) | 55, 528 |
| MaeI | CTAG | 1 cut(s) | 476 |
| MaeIII | GTNAC | 1 cut(s) | 283 |
| MalI | GATC | 3 cut(s) | 305, 341, 417 |
| MboI | GATC | 3 cut(s) | 303, 339, 415 |
| MboII | GAAGA | 4 cut(s) | 44, 208, 361, 406 |
| MflI | RGATCY | 1 cut(s) | 415 |
| MhlI | GDGCHC | 1 cut(s) | 186 |
| MluCI | AATT | 2 cut(s) | 239, 374 |
| Mly113I | GGCGCC | 1 cut(s) | 485 |
| MlyI | GAGTC | 3 cut(s) | 55, 474, 564 |
| MnlI | CCTC | 9 cut(s) | 28, 55, 274, 324, 343, 346, 382, 405, 496 |
| MseI | TTAA | 2 cut(s) | 173, 378 |
| MspI | CCGG | 1 cut(s) | 343 |
| MspR9I | CCNGG | 1 cut(s) | 165 |
| MvaI | CCWGG | 1 cut(s) | 165 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NarI | GGCGCC | 1 cut(s) | 485 |
| NdeI | CATATG | 1 cut(s) | 247 |
| NdeII | GATC | 3 cut(s) | 303, 339, 415 |
| NlaIII | CATG | 2 cut(s) | 77, 442 |
| NlaIV | GGNNCC | 3 cut(s) | 15, 417, 486 |
| NspV | TTCGAA | 1 cut(s) | 30 |
| PaeR7I | CTCGAG | 1 cut(s) | 409 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 36 |
| PfeI | GAWTC | 2 cut(s) | 77, 397 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 315 |
| PkrI | GCNGC | 3 cut(s) | 7, 145, 484 |
| PleI | GAGTC | 3 cut(s) | 54, 473, 564 |
| PluTI | GGCGCC | 1 cut(s) | 488 |
| PpsI | GAGTC | 3 cut(s) | 54, 473, 564 |
| PshAI | GACNNNNGTC | 1 cut(s) | 106 |
| Psp124BI | GAGCTC | 1 cut(s) | 186 |
| Psp6I | CCWGG | 1 cut(s) | 163 |
| PspGI | CCWGG | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 3 cut(s) | 15, 417, 486 |
| PsuI | RGATCY | 1 cut(s) | 415 |
| SacI | GAGCTC | 1 cut(s) | 186 |
| SaqAI | TTAA | 2 cut(s) | 173, 378 |
| SatI | GCNGC | 3 cut(s) | 6, 144, 483 |
| Sau3AI | GATC | 3 cut(s) | 303, 339, 415 |
| SchI | GAGTC | 3 cut(s) | 55, 474, 564 |
| ScrFI | CCNGG | 1 cut(s) | 165 |
| SduI | GDGCHC | 1 cut(s) | 186 |
| SetI | ASST | 8 cut(s) | 166, 186, 192, 210, 285, 393, 477, 507 |
| SfaNI | GCATC | 2 cut(s) | 55, 528 |
| SfoI | GGCGCC | 1 cut(s) | 486 |
| Sfr274I | CTCGAG | 1 cut(s) | 409 |
| SfuI | TTCGAA | 1 cut(s) | 30 |
| SlaI | CTCGAG | 1 cut(s) | 409 |
| SmlI | CTYRAG | 2 cut(s) | 409, 500 |
| SmoI | CTYRAG | 2 cut(s) | 409, 500 |
| Sse9I | AATT | 2 cut(s) | 239, 374 |
| SsiI | CCGC | 8 cut(s) | 5, 8, 119, 143, 452, 482, 529, 541 |
| SspDI | GGCGCC | 1 cut(s) | 484 |
| SspMI | CTAG | 1 cut(s) | 476 |
| SstI | GAGCTC | 1 cut(s) | 186 |
| StyD4I | CCNGG | 1 cut(s) | 163 |
| StyI | CCWWGG | 1 cut(s) | 419 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TaqI | TCGA | 2 cut(s) | 30, 410 |
| TasI | AATT | 2 cut(s) | 239, 374 |
| TauI | GCSGC | 3 cut(s) | 8, 146, 485 |
| TfiI | GAWTC | 2 cut(s) | 77, 397 |
| Tru1I | TTAA | 2 cut(s) | 173, 378 |
| Tru9I | TTAA | 2 cut(s) | 173, 378 |
| TscAI | CASTG | 1 cut(s) | 582 |
| TspGWI | ACGGA | 2 cut(s) | 6, 477 |
| TspRI | CASTG | 1 cut(s) | 582 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 315 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 118, 445 |
| XhoI | CTCGAG | 1 cut(s) | 409 |
| XspI | CTAG | 1 cut(s) | 476 |