Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000123

Physical Location & Seq

Genomic Coordinates Forward (+)

23134564 .. 23135391

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1144900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATATGTCTAATGGCTTCTCAGTCCATGGGCATGGCAACAATTTTTTTCTACACATGTTTTTGGATCCCATTTCACCAAATGAAGAAATTTTTGGCCAGATTATTTTCTGGTGTGATTTTTTTCACTAATTTCCAGCAGCAGGAAGAGGAGGACTGTATGAGTCTTTCAGTGGCCAGGTTCCAGGACTTGCAAGCTCATGGTACCAAAAGGTGTGCACAAGTTTTGGAGGAGACATGTTCAGTTTGCTTGGTGGATTTTGAGGAGGAGGATTTGGTGAGCCAATTGGGAAAATGTGGGCATGTTTTCCACGTGGATTGCATTGAGAGGTGGATTGAGAGCAGCCATTTTCGCTGCCCAATTTGCAGGTCACTGTTCTTCAATGTCAAAACATGCCATGCAAAACTGGATGAGGATGATATACATATAGATTCTTGTCATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031224 GO:0031225 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

149

Amino Acids

17.24

Weight (kDa)

5.37

Isoelectric Point (pI)

71.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	72 - 123	4.5e-12	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	72 - 126	7.7e-09	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	79 - 123	2.2e-13	Ring finger domain
zf-C3HC4_2	PF13923	80 - 122	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	80 - 122	4.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	80 - 108	4.7e-08	RING-like zinc finger
zf-RING_UBOX	PF13445	80 - 120	5.4e-08	RING-type zinc-finger
zf-RING_5	PF14634	80 - 123	7.8e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38140
fragaria_vesca	FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica	MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica	Prupe.8G183300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata	RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora	Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa	Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha	Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana	Rw4G024160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	357
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	61, 74
AcoI	YGGCCR	2 cut(s)	96, 174
AcsI	RAATTY	1 cut(s)	89
AcvI	CACGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	2 cut(s)	56, 236
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	176, 183
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	61, 74
AoxI	GGCC	2 cut(s)	96, 174
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	3 cut(s)	139, 342, 354
ApoI	RAATTY	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	68, 289
BaeGI	GKGCMC	1 cut(s)	220
BalI	TGGCCA	2 cut(s)	98, 176
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	151, 341, 354
BciT130I	CCWGG	2 cut(s)	178, 185
BcoDI	GTCTC	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	3 cut(s)	140, 343, 355
BlsI	GCNGC	3 cut(s)	141, 344, 356
Bme1390I	CCNGG	2 cut(s)	178, 185
BmiI	GGNNCC	3 cut(s)	68, 182, 205
BmrFI	CCNGG	2 cut(s)	178, 185
BsaAI	YACGTR	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	178, 185
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	415, 421
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	4 cut(s)	164, 245, 278, 281
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	151, 341, 354
BshFI	GGCC	2 cut(s)	98, 176
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	98, 176
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	27
BspANI	GGCC	2 cut(s)	98, 176
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	68, 182, 205
BspMI	ACCTGC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	61, 74
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	178, 185
Bst4CI	ACNGT	2 cut(s)	158, 375
Bst6I	CTCTTC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	415, 421
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 363
BstNI	CCWGG	2 cut(s)	178, 185
BstNSI	RCATGY	4 cut(s)	60, 240, 305, 396
BstSCI	CCNGG	2 cut(s)	176, 183
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	151, 341, 354
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	98, 176
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	415, 421
BtsIMutI	CAGTG	2 cut(s)	177, 371
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	204
CspCI	CAANNNNNGTGG	2 cut(s)	299, 334
CviAII	CATG	8 cut(s)	28, 34, 57, 200, 237, 302, 393, 398
CviJI	RGCY	6 cut(s)	17, 98, 176, 197, 282, 345
CviKI_1	RGCY	6 cut(s)	17, 98, 176, 197, 282, 345
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EaeI	YGGCCR	2 cut(s)	96, 174
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	176, 183
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	8 cut(s)	31, 37, 60, 203, 240, 305, 396, 401
FatI	CATG	8 cut(s)	27, 33, 56, 199, 236, 301, 392, 397
Fnu4HI	GCNGC	3 cut(s)	140, 343, 355
FokI	GGATG	2 cut(s)	422, 428
Fsp4HI	GCNGC	3 cut(s)	140, 343, 355
GluI	GCNGC	3 cut(s)	140, 343, 355
HaeIII	GGCC	2 cut(s)	98, 176
Hin1II	CATG	8 cut(s)	31, 37, 60, 203, 240, 305, 396, 401
HinfI	GANTC	2 cut(s)	163, 431
HphI	GGTGA	2 cut(s)	68, 289
Hpy166II	GTNNAC	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	158, 375
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	193, 218, 321, 366, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 363
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	8 cut(s)	31, 37, 60, 203, 240, 305, 396, 401
KpnI	GGTACC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	66
Lsp1109I	GCAGC	3 cut(s)	151, 341, 354
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	3 cut(s)	97, 158, 370
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	2 cut(s)	98, 176
MluCI	AATT	5 cut(s)	42, 89, 130, 284, 360
MluNI	TGGCCA	2 cut(s)	98, 176
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	8 cut(s)	142, 145, 223, 256, 259, 262, 321, 406
Mox20I	TGGCCA	2 cut(s)	98, 176
MscI	TGGCCA	2 cut(s)	98, 176
MslI	CAYNNNNRTG	1 cut(s)	32
Msp20I	TGGCCA	2 cut(s)	98, 176
MspR9I	CCNGG	2 cut(s)	178, 185
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	2 cut(s)	178, 185
MwoI	GCNNNNNNNGC	2 cut(s)	351, 363
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	8 cut(s)	31, 37, 60, 203, 240, 305, 396, 401
NlaIV	GGNNCC	3 cut(s)	68, 182, 205
NmuCI	GTSAC	1 cut(s)	369
NspI	RCATGY	4 cut(s)	60, 240, 305, 396
PciI	ACATGT	2 cut(s)	56, 236
PfeI	GAWTC	1 cut(s)	431
PfoI	TCCNGGA	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	141, 344, 356
PleI	GAGTC	1 cut(s)	171
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	313
PscI	ACATGT	2 cut(s)	56, 236
PsiI	TTATAA	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	176, 183
PspCI	CACGTG	1 cut(s)	313
PspGI	CCWGG	2 cut(s)	176, 183
PspN4I	GGNNCC	3 cut(s)	68, 182, 205
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	3 cut(s)	140, 343, 355
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	178, 185
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	6 cut(s)	182, 199, 215, 315, 332, 371
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	42, 89, 130, 284, 360
StyD4I	CCNGG	2 cut(s)	176, 183
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	158, 375
TaiI	ACGT	1 cut(s)	315
TasI	AATT	5 cut(s)	42, 89, 130, 284, 360
TfiI	GAWTC	1 cut(s)	431
TscAI	CASTG	2 cut(s)	177, 378
TseFI	GTSAC	1 cut(s)	369
TseI	GCWGC	3 cut(s)	139, 342, 354
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	177, 378
VneI	GTGCAC	1 cut(s)	216
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	4 cut(s)	60, 240, 305, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.