Zinc knuckle
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 81 |
| Acc36I | ACCTGC | 1 cut(s) | 258 |
| AccB1I | GGYRCC | 1 cut(s) | 376 |
| AciI | CCGC | 2 cut(s) | 167, 215 |
| AclWI | GGATC | 1 cut(s) | 260 |
| AcsI | RAATTY | 1 cut(s) | 12 |
| AcyI | GRCGYC | 1 cut(s) | 377 |
| AfaI | GTAC | 2 cut(s) | 194, 236 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 286, 361 |
| AgsI | TTSAA | 2 cut(s) | 90, 311 |
| AluBI | AGCT | 1 cut(s) | 445 |
| AluI | AGCT | 1 cut(s) | 445 |
| AlwI | GGATC | 1 cut(s) | 260 |
| AoxI | GGCC | 3 cut(s) | 67, 352, 434 |
| ApeKI | GCWGC | 2 cut(s) | 142, 509 |
| ApoI | RAATTY | 1 cut(s) | 12 |
| AspLEI | GCGC | 3 cut(s) | 147, 189, 379 |
| AspS9I | GGNCC | 4 cut(s) | 68, 343, 434, 491 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| AvaII | GGWCC | 2 cut(s) | 343, 491 |
| BanI | GGYRCC | 1 cut(s) | 376 |
| BbvI | GCAGC | 2 cut(s) | 129, 521 |
| BccI | CCATC | 4 cut(s) | 107, 284, 457, 482 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BfaI | CTAG | 2 cut(s) | 356, 416 |
| BfmI | CTRYAG | 1 cut(s) | 507 |
| BfoI | RGCGCY | 1 cut(s) | 380 |
| BfuAI | ACCTGC | 1 cut(s) | 258 |
| BisI | GCNGC | 2 cut(s) | 143, 510 |
| BlsI | GCNGC | 2 cut(s) | 144, 511 |
| Bme18I | GGWCC | 2 cut(s) | 343, 491 |
| BmgT120I | GGNCC | 4 cut(s) | 68, 343, 434, 491 |
| BmiI | GGNNCC | 1 cut(s) | 378 |
| BmrI | ACTGGG | 1 cut(s) | 375 |
| BmsI | GCATC | 1 cut(s) | 411 |
| BmuI | ACTGGG | 1 cut(s) | 375 |
| BoxI | GACNNNNGTC | 1 cut(s) | 53 |
| BpmI | CTGGAG | 1 cut(s) | 516 |
| BpuEI | CTTGAG | 1 cut(s) | 173 |
| BsaHI | GRCGYC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 4 cut(s) | 71, 182, 247, 280 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 286, 361 |
| Bse118I | RCCGGY | 1 cut(s) | 436 |
| Bse1I | ACTGG | 2 cut(s) | 25, 381 |
| BseDI | CCNNGG | 4 cut(s) | 71, 182, 247, 280 |
| BseGI | GGATG | 4 cut(s) | 136, 295, 472, 493 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 286, 361 |
| BseNI | ACTGG | 2 cut(s) | 25, 381 |
| BseRI | GAGGAG | 1 cut(s) | 17 |
| BseXI | GCAGC | 2 cut(s) | 129, 521 |
| BseYI | CCCAGC | 1 cut(s) | 445 |
| BsgI | GTGCAG | 1 cut(s) | 286 |
| BshFI | GGCC | 3 cut(s) | 69, 354, 436 |
| BshNI | GGYRCC | 1 cut(s) | 376 |
| BsiSI | CCGG | 2 cut(s) | 206, 437 |
| BslFI | GGGAC | 1 cut(s) | 328 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 286, 361 |
| BsmFI | GGGAC | 1 cut(s) | 328 |
| BsnI | GGCC | 3 cut(s) | 69, 354, 436 |
| Bsp143I | GATC | 1 cut(s) | 252 |
| Bsp19I | CCATGG | 2 cut(s) | 247, 280 |
| BspACI | CCGC | 2 cut(s) | 167, 215 |
| BspANI | GGCC | 3 cut(s) | 69, 354, 436 |
| BspLI | GGNNCC | 1 cut(s) | 378 |
| BspMAI | CTGCAG | 1 cut(s) | 511 |
| BspMI | ACCTGC | 1 cut(s) | 258 |
| BspPI | GGATC | 1 cut(s) | 260 |
| BspT107I | GGYRCC | 1 cut(s) | 376 |
| BsrFI | RCCGGY | 1 cut(s) | 436 |
| BsrI | ACTGG | 2 cut(s) | 25, 381 |
| BssAI | RCCGGY | 1 cut(s) | 436 |
| BssECI | CCNNGG | 4 cut(s) | 71, 182, 247, 280 |
| BssMI | GATC | 1 cut(s) | 252 |
| BssNI | GRCGYC | 1 cut(s) | 377 |
| BssT1I | CCWWGG | 3 cut(s) | 71, 247, 280 |
| BstACI | GRCGYC | 1 cut(s) | 377 |
| BstDSI | CCRYGG | 2 cut(s) | 247, 280 |
| BstF5I | GGATG | 4 cut(s) | 136, 295, 472, 493 |
| BstH2I | RGCGCY | 1 cut(s) | 380 |
| BstHHI | GCGC | 3 cut(s) | 147, 189, 379 |
| BstKTI | GATC | 1 cut(s) | 255 |
| BstMBI | GATC | 1 cut(s) | 252 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 184, 332, 421, 442 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 1 cut(s) | 507 |
| BstV1I | GCAGC | 2 cut(s) | 129, 521 |
| BstX2I | RGATCY | 1 cut(s) | 252 |
| BstYI | RGATCY | 1 cut(s) | 252 |
| BsuRI | GGCC | 3 cut(s) | 69, 354, 436 |
| BtgI | CCRYGG | 2 cut(s) | 247, 280 |
| BtsCI | GGATG | 4 cut(s) | 136, 295, 472, 493 |
| BveI | ACCTGC | 1 cut(s) | 258 |
| CfoI | GCGC | 3 cut(s) | 147, 189, 379 |
| Cfr10I | RCCGGY | 1 cut(s) | 436 |
| Cfr13I | GGNCC | 4 cut(s) | 68, 343, 434, 491 |
| Csp6I | GTAC | 2 cut(s) | 193, 235 |
| CviAII | CATG | 3 cut(s) | 53, 248, 281 |
| CviQI | GTAC | 2 cut(s) | 193, 235 |
| DinI | GGCGCC | 1 cut(s) | 378 |
| DpnI | GATC | 1 cut(s) | 254 |
| DpnII | GATC | 1 cut(s) | 252 |
| Eco130I | CCWWGG | 3 cut(s) | 71, 247, 280 |
| Eco47I | GGWCC | 2 cut(s) | 343, 491 |
| EcoO109I | RGGNCCY | 1 cut(s) | 68 |
| EcoT14I | CCWWGG | 3 cut(s) | 71, 247, 280 |
| EgeI | GGCGCC | 1 cut(s) | 378 |
| EheI | GGCGCC | 1 cut(s) | 378 |
| ErhI | CCWWGG | 3 cut(s) | 71, 247, 280 |
| FaeI | CATG | 3 cut(s) | 56, 251, 284 |
| FaiI | YATR | 7 cut(s) | 54, 81, 111, 249, 282, 396, 476 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FaqI | GGGAC | 1 cut(s) | 328 |
| FatI | CATG | 3 cut(s) | 52, 247, 280 |
| Fnu4HI | GCNGC | 2 cut(s) | 143, 510 |
| FokI | GGATG | 4 cut(s) | 143, 302, 479, 500 |
| Fsp4HI | GCNGC | 2 cut(s) | 143, 510 |
| FspBI | CTAG | 2 cut(s) | 356, 416 |
| GlaI | GCGC | 3 cut(s) | 146, 188, 378 |
| GluI | GCNGC | 2 cut(s) | 143, 510 |
| GsaI | CCCAGC | 1 cut(s) | 449 |
| GsuI | CTGGAG | 1 cut(s) | 516 |
| HaeII | RGCGCY | 1 cut(s) | 380 |
| HaeIII | GGCC | 3 cut(s) | 69, 354, 436 |
| HapII | CCGG | 2 cut(s) | 206, 437 |
| HhaI | GCGC | 3 cut(s) | 147, 189, 379 |
| Hin1I | GRCGYC | 1 cut(s) | 377 |
| Hin1II | CATG | 3 cut(s) | 56, 251, 284 |
| Hin6I | GCGC | 3 cut(s) | 145, 187, 377 |
| HinP1I | GCGC | 3 cut(s) | 145, 187, 377 |
| HpaII | CCGG | 2 cut(s) | 206, 437 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 1 cut(s) | 386 |
| Hpy188I | TCNGA | 2 cut(s) | 343, 460 |
| Hpy188III | TCNNGA | 1 cut(s) | 533 |
| Hpy8I | GTNNAC | 1 cut(s) | 386 |
| HpyAV | CCTTC | 1 cut(s) | 305 |
| HpyCH4V | TGCA | 2 cut(s) | 267, 509 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 184, 332, 421, 442 |
| Hsp92I | GRCGYC | 1 cut(s) | 377 |
| Hsp92II | CATG | 3 cut(s) | 56, 251, 284 |
| HspAI | GCGC | 3 cut(s) | 145, 187, 377 |
| KasI | GGCGCC | 1 cut(s) | 376 |
| Kzo9I | GATC | 1 cut(s) | 252 |
| LmnI | GCTCC | 3 cut(s) | 34, 429, 442 |
| Lsp1109I | GCAGC | 2 cut(s) | 129, 521 |
| LweI | GCATC | 1 cut(s) | 411 |
| MaeI | CTAG | 2 cut(s) | 356, 416 |
| MaeIII | GTNAC | 3 cut(s) | 169, 296, 523 |
| MalI | GATC | 1 cut(s) | 254 |
| MboI | GATC | 1 cut(s) | 252 |
| MboII | GAAGA | 3 cut(s) | 265, 268, 482 |
| MflI | RGATCY | 1 cut(s) | 252 |
| MluCI | AATT | 3 cut(s) | 12, 85, 359 |
| Mly113I | GGCGCC | 1 cut(s) | 377 |
| MmeI | TCCRAC | 1 cut(s) | 321 |
| MnlI | CCTC | 9 cut(s) | 34, 59, 68, 127, 148, 192, 202, 255, 394 |
| MseI | TTAA | 1 cut(s) | 30 |
| MspI | CCGG | 2 cut(s) | 206, 437 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 184, 332, 421, 442 |
| NarI | GGCGCC | 1 cut(s) | 377 |
| NcoI | CCATGG | 2 cut(s) | 247, 280 |
| NdeII | GATC | 1 cut(s) | 252 |
| NlaIII | CATG | 3 cut(s) | 56, 251, 284 |
| NlaIV | GGNNCC | 1 cut(s) | 378 |
| NmeAIII | GCCGAG | 1 cut(s) | 163 |
| NmuCI | GTSAC | 3 cut(s) | 169, 296, 523 |
| PkrI | GCNGC | 2 cut(s) | 144, 511 |
| PluTI | GGCGCC | 1 cut(s) | 380 |
| PshAI | GACNNNNGTC | 1 cut(s) | 53 |
| PsiI | TTATAA | 1 cut(s) | 81 |
| PspFI | CCCAGC | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 1 cut(s) | 378 |
| PspPI | GGNCC | 4 cut(s) | 68, 343, 434, 491 |
| PstI | CTGCAG | 1 cut(s) | 511 |
| PsuI | RGATCY | 1 cut(s) | 252 |
| RsaI | GTAC | 2 cut(s) | 194, 236 |
| RsaNI | GTAC | 2 cut(s) | 193, 235 |
| SaqAI | TTAA | 1 cut(s) | 30 |
| SatI | GCNGC | 2 cut(s) | 143, 510 |
| Sau3AI | GATC | 1 cut(s) | 252 |
| Sau96I | GGNCC | 4 cut(s) | 68, 343, 434, 491 |
| SetI | ASST | 9 cut(s) | 138, 153, 159, 213, 236, 266, 272, 405, 447 |
| SfaNI | GCATC | 1 cut(s) | 411 |
| SfcI | CTRYAG | 1 cut(s) | 507 |
| SfoI | GGCGCC | 1 cut(s) | 378 |
| SinI | GGWCC | 2 cut(s) | 343, 491 |
| SmlI | CTYRAG | 1 cut(s) | 152 |
| SmoI | CTYRAG | 1 cut(s) | 152 |
| Sse9I | AATT | 3 cut(s) | 12, 85, 359 |
| SsiI | CCGC | 2 cut(s) | 167, 215 |
| SspDI | GGCGCC | 1 cut(s) | 376 |
| SspMI | CTAG | 2 cut(s) | 356, 416 |
| StyI | CCWWGG | 3 cut(s) | 71, 247, 280 |
| TaqI | TCGA | 1 cut(s) | 500 |
| TaqII | GACCGA | 1 cut(s) | 508 |
| TasI | AATT | 3 cut(s) | 12, 85, 359 |
| TatI | WGTACW | 1 cut(s) | 192 |
| Tru1I | TTAA | 1 cut(s) | 30 |
| Tru9I | TTAA | 1 cut(s) | 30 |
| TseFI | GTSAC | 3 cut(s) | 169, 296, 523 |
| TseI | GCWGC | 2 cut(s) | 142, 509 |
| Tsp45I | GTSAC | 3 cut(s) | 169, 296, 523 |
| TspDTI | ATGAA | 1 cut(s) | 483 |
| VpaK11BI | GGWCC | 2 cut(s) | 343, 491 |
| XapI | RAATTY | 1 cut(s) | 12 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 59, 287 |
| XspI | CTAG | 2 cut(s) | 356, 416 |