Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007813.1

Orthogroup ID

OG0000123

Physical Location & Seq

Genomic Coordinates Reverse (-)

4064 .. 7975

Gene Structure 3912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007813.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1932 bp

atgccatggagtctcacaggacgtagaagcactgttgtaaaacctgtgcatgcagcaaccgcaactaaggccatcccagattgtgaaggctttcaggatttctttacctttaaactggttttaagatcaacgaaagagcagttgctatttaaagggtgccttgcaaggattgaagttgatgctgaggttaggatttcgatgggatatccttatatcgtatatgctcaagatgtccaagacagtagacgtcgtcgcagcctcacaatgtcatggacttatatagatgcgatggcggcggaaggtgcagcgacgtctctcgccttgtcggaggaggccatagtgagcctggttgggggcggggatgtgatccatgatccattcttttacctatgtgggcgtttgctaaccaagaaaccagtggttattccatcgttctcggcggcgatgtccggaatatggtggctgaatgatcgggagcaggcggtgaagcatcgtgttcttcatggcgggccctggtattacagtaactcgatgttgttattggctgattatgatggtgttggggcactcgcagaggttcctctgcactccctggagctgtgggtggcggtgataggtctgagagttgccatgcgcaacgaacgggctctcacaaggcttggtaacatgctaggaacctttgtcaaggcggatggtgtggcgctgcaacgaaaggaggctgtccagaggattcggttgatccatgatgtgcgccaccgagtttgggctcggcgtacgatctgtttctcgccggaggtttctgtggtccttgaattccggtatgaaaaatgccgcggaatctgcaaggcttgtggtttcttcactcatggcggaggggagtgcgatcggaagctggtgcaggaattggttgtggaggaactgtttctgccatctgaattgcagaaggaggcaggtccgccgtccaatgcctcagtggaagacccgtcgacgtcaatcttttctgcagcctggattaacaaagttggcacctgcgctgggggttctggtaccatgcaggaggttgatgctgggaaggaagcggcggagctgaggacgggatccatgttggctgctccgtgtttttcggcgggaaaccctaatttcaaattagggttgaccgctggaccgggcttgaatatgggcttgaccaatttgaggactaatgggctggattctggacctgttgggctggcaggagatggggctttagctgttggttgttttggacacccatctagggttttgggtgtgagaaggcttcgggaggaggagtggctcgaagatggaaagcgtctgaaactttctgatagcttagttgaagtcccagtaattgatggaaagattctcaagaagaaggcactactagaattatcaaccgacctcctcttcctccttctccgcctccgaccactatcctcctcctcctccgcctccttctctccagtccagtcgaagccggagctgcgttcaccgttctcctttctctctccgtgggcttccccctctcagcccttctcttcgaccgtcgaggcgtcgacgaccttcgctctcctccactgtaagtgggaatgtgatgtcctcatcccttctgctttgggtggagttcttaatagtgagaagctgaaaactttctgggttcgatttctgattcttcaaagtccgtgtcttggcatgctagttgctgcaacttctggaactggatttgttcttggaagtggcagtgccgtcgattttgctggactttgttggatatgtgttggtaccatgatgtttgcagcatctgctaactctttaaatcaggtgttcgagaagtataatgatgccaaactgaagagaacgatgcaaagacccctaccttcaggacacattactaggcctcatgcaattgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0015980 GO:0016740 GO:0016765 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00190 ko00860 ko01100 ko01110 ko04714 map00190 map00860 map01100 map01110 map04714

Pfam Domains

Protein Families

UbiA

Protein Analysis

643

Amino Acids

70.02

Weight (kDa)

8.76

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38140
fragaria_vesca	FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica	MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica	Prupe.8G183300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata	RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora	Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii	Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa	Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha	Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana	Rw4G024160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1037
AatII	GACGTC	3 cut(s)	250, 314, 992
Acc16I	TGCGCA	1 cut(s)	635
Acc36I	ACCTGC	2 cut(s)	941, 1037
Acc65I	GGTACC	2 cut(s)	1046, 1799
AccB1I	GGYRCC	4 cut(s)	156, 1025, 1046, 1799
AccI	GTMKAC	3 cut(s)	244, 986, 1574
AccII	CGCG	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	449
AclWI	GGATC	5 cut(s)	361, 368, 733, 1092, 1105
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	2 cut(s)	1881, 1889
AcyI	GRCGYC	4 cut(s)	247, 311, 989, 1571
AfaI	GTAC	3 cut(s)	775, 1048, 1801
AfiI	CCNNNNNNNGG	7 cut(s)	352, 456, 763, 1035, 1194, 1276, 1706
AgsI	TTSAA	6 cut(s)	173, 812, 1144, 1174, 1358, 1694
AjnI	CCWGG	4 cut(s)	345, 512, 591, 1007
AluBI	AGCT	7 cut(s)	598, 892, 1087, 1250, 1350, 1501, 1660
AluI	AGCT	7 cut(s)	598, 892, 1087, 1250, 1350, 1501, 1660
Alw26I	GTCTC	2 cut(s)	17, 318
AlwI	GGATC	5 cut(s)	361, 368, 733, 1092, 1105
AlwNI	CAGNNNCTG	1 cut(s)	1820
Aor13HI	TCCGGA	1 cut(s)	449
AoxI	GGCC	4 cut(s)	69, 333, 509, 1913
ApaI	GGGCCC	1 cut(s)	513
ApeKI	GCWGC	9 cut(s)	53, 255, 305, 703, 1004, 1109, 1501, 1721, 1814
ApoI	RAATTY	1 cut(s)	812
ArsI	GACNNNNNNTTYG	2 cut(s)	1687, 1719
Asp700I	GAANNNNTTC	3 cut(s)	90, 921, 1667
Asp718I	GGTACC	2 cut(s)	1046, 1799
AspLEI	GCGC	4 cut(s)	636, 703, 753, 1034
AspS9I	GGNCC	6 cut(s)	509, 510, 805, 953, 1163, 1217
AsuC2I	CCSGG	1 cut(s)	1167
AsuHPI	GGTGA	3 cut(s)	496, 622, 1500
AvaII	GGWCC	4 cut(s)	805, 953, 1163, 1217
BaeGI	GKGCMC	2 cut(s)	513, 568
BamHI	GGATCC	1 cut(s)	1097
BanI	GGYRCC	4 cut(s)	156, 1025, 1046, 1799
BanII	GRGCYC	3 cut(s)	513, 649, 769
BbsI	GAAGAC	1 cut(s)	984
BbvCI	CCTCAGC	2 cut(s)	183, 1088
BbvI	GCAGC	9 cut(s)	65, 267, 317, 690, 1016, 1096, 1488, 1708, 1826
BceAI	ACGGC	2 cut(s)	943, 1748
BcgI	CGANNNNNNTGC	2 cut(s)	1747, 1781
BciT130I	CCWGG	4 cut(s)	347, 514, 593, 1009
BcnI	CCSGG	1 cut(s)	1167
BcoDI	GTCTC	2 cut(s)	17, 318
BfaI	CTAG	6 cut(s)	671, 1275, 1403, 1715, 1911, 1930
BfmI	CTRYAG	1 cut(s)	1002
BfoI	RGCGCY	1 cut(s)	704
BfuAI	ACCTGC	2 cut(s)	941, 1037
Bme1390I	CCNGG	5 cut(s)	347, 514, 593, 1009, 1167
Bme18I	GGWCC	4 cut(s)	805, 953, 1163, 1217
BmgT120I	GGNCC	6 cut(s)	509, 510, 805, 953, 1163, 1217
BmiI	GGNNCC	8 cut(s)	158, 511, 579, 676, 1027, 1048, 1099, 1801
BmrFI	CCNGG	5 cut(s)	347, 514, 593, 1009, 1167
BmrI	ACTGGG	1 cut(s)	1358
BmsI	GCATC	7 cut(s)	169, 274, 499, 1054, 1826, 1849, 1869
BmuI	ACTGGG	1 cut(s)	1358
BpiI	GAAGAC	1 cut(s)	984
BpmI	CTGGAG	2 cut(s)	614, 1464
Bpu10I	CCTNAGC	2 cut(s)	183, 1088
BpuEI	CTTGAG	2 cut(s)	210, 1370
BpuMI	CCSGG	1 cut(s)	1167
BsaHI	GRCGYC	4 cut(s)	247, 311, 989, 1571
BsaJI	CCNNGG	5 cut(s)	5, 512, 591, 832, 1529
BsaWI	WCCGGW	2 cut(s)	449, 816
BsaXI	ACNNNNNCTCC	4 cut(s)	905, 935, 1295, 1325
Bsc4I	CCNNNNNNNGG	7 cut(s)	352, 456, 763, 1035, 1194, 1276, 1706
Bse1I	ACTGG	6 cut(s)	120, 416, 1364, 1481, 1486, 1741
BseAI	TCCGGA	1 cut(s)	449
BseBI	CCWGG	4 cut(s)	347, 514, 593, 1009
BseDI	CCNNGG	5 cut(s)	5, 512, 591, 832, 1529
BseGI	GGATG	4 cut(s)	72, 367, 697, 1620
BseLI	CCNNNNNNNGG	7 cut(s)	352, 456, 763, 1035, 1194, 1276, 1706
BseMII	CTCAG	5 cut(s)	174, 611, 984, 1079, 1559
BseNI	ACTGG	6 cut(s)	120, 416, 1364, 1481, 1486, 1741
BseRI	GAGGAG	8 cut(s)	344, 1319, 1322, 1412, 1447, 1450, 1453, 1580
BseSI	GKGCMC	2 cut(s)	513, 568
BseXI	GCAGC	9 cut(s)	65, 267, 317, 690, 1016, 1096, 1488, 1708, 1826
BseYI	CCCAGC	2 cut(s)	1034, 1067
BsgI	GTGCAG	3 cut(s)	324, 569, 917
Bsh1236I	CGCG	1 cut(s)	834
Bsh1285I	CGRYCG	2 cut(s)	886, 1563
BshFI	GGCC	4 cut(s)	71, 335, 511, 1915
BshNI	GGYRCC	4 cut(s)	156, 1025, 1046, 1799
BsiEI	CGRYCG	2 cut(s)	886, 1563
BsiSI	CCGG	5 cut(s)	450, 791, 817, 1166, 1496
BsiWI	CGTACG	1 cut(s)	773
BslFI	GGGAC	1 cut(s)	1346
BslI	CCNNNNNNNGG	7 cut(s)	352, 456, 763, 1035, 1194, 1276, 1706
BsmAI	GTCTC	2 cut(s)	17, 318
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	1346
BsnI	GGCC	4 cut(s)	71, 335, 511, 1915
Bsp120I	GGGCCC	1 cut(s)	509
Bsp1286I	GDGCHC	4 cut(s)	513, 568, 649, 769
Bsp13I	TCCGGA	1 cut(s)	449
Bsp143I	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
Bsp19I	CCATGG	1 cut(s)	5
BspANI	GGCC	4 cut(s)	71, 335, 511, 1915
BspCNI	CTCAG	5 cut(s)	175, 612, 983, 1080, 1558
BspEI	TCCGGA	1 cut(s)	449
BspFNI	CGCG	1 cut(s)	834
BspLI	GGNNCC	8 cut(s)	158, 511, 579, 676, 1027, 1048, 1099, 1801
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	2 cut(s)	941, 1037
BspPI	GGATC	5 cut(s)	361, 368, 733, 1092, 1105
BspT107I	GGYRCC	4 cut(s)	156, 1025, 1046, 1799
BsrI	ACTGG	6 cut(s)	120, 416, 1364, 1481, 1486, 1741
BssECI	CCNNGG	5 cut(s)	5, 512, 591, 832, 1529
BssMI	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
BssNI	GRCGYC	4 cut(s)	247, 311, 989, 1571
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	4 cut(s)	347, 514, 593, 1009
Bst4CI	ACNGT	7 cut(s)	34, 242, 524, 921, 1512, 1564, 1598
Bst6I	CTCTTC	3 cut(s)	1430, 1561, 1865
BstACI	GRCGYC	4 cut(s)	247, 311, 989, 1571
BstAPI	GCANNNNNTGC	1 cut(s)	1820
BstC8I	GCNNGC	5 cut(s)	51, 480, 509, 1230, 1712
BstDEI	CTNAG	7 cut(s)	66, 183, 620, 970, 1088, 1351, 1545
BstDSI	CCRYGG	3 cut(s)	5, 832, 1529
BstF5I	GGATG	4 cut(s)	72, 367, 697, 1620
BstFNI	CGCG	1 cut(s)	834
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	4 cut(s)	636, 703, 753, 1034
BstKTI	GATC	8 cut(s)	128, 369, 376, 472, 741, 780, 886, 1100
BstMAI	GTCTC	2 cut(s)	17, 318
BstMBI	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
BstMCI	CGRYCG	2 cut(s)	886, 1563
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 68, 293, 302, 840, 1501, 1820
BstNI	CCWGG	4 cut(s)	347, 514, 593, 1009
BstNSI	RCATGY	3 cut(s)	53, 670, 1714
BstSCI	CCNGG	5 cut(s)	345, 512, 591, 1007, 1165
BstSFI	CTRYAG	1 cut(s)	1002
BstSLI	GKGCMC	2 cut(s)	513, 568
BstUI	CGCG	1 cut(s)	834
BstV1I	GCAGC	9 cut(s)	65, 267, 317, 690, 1016, 1096, 1488, 1708, 1826
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	1 cut(s)	1097
BstYI	RGATCY	1 cut(s)	1097
BsuRI	GGCC	4 cut(s)	71, 335, 511, 1915
BtgI	CCRYGG	3 cut(s)	5, 832, 1529
BtgZI	GCGATG	2 cut(s)	302, 458
BtsCI	GGATG	4 cut(s)	72, 367, 697, 1620
BtsI	GCAGTG	1 cut(s)	1765
BtsIMutI	CAGTG	5 cut(s)	30, 423, 978, 1594, 1765
BveI	ACCTGC	2 cut(s)	941, 1037
Cac8I	GCNNGC	5 cut(s)	51, 480, 509, 1230, 1712
CaiI	CAGNNNCTG	1 cut(s)	1820
CfoI	GCGC	4 cut(s)	636, 703, 753, 1034
Cfr13I	GGNCC	6 cut(s)	509, 510, 805, 953, 1163, 1217
Cfr42I	CCGCGG	1 cut(s)	835
CseI	GACGC	2 cut(s)	1319, 1560
Csp6I	GTAC	3 cut(s)	774, 1047, 1800
CspCI	CAANNNNNGTGG	4 cut(s)	743, 778, 832, 867
CviQI	GTAC	3 cut(s)	774, 1047, 1800
DdeI	CTNAG	7 cut(s)	66, 183, 620, 970, 1088, 1351, 1545
DpnI	GATC	8 cut(s)	127, 368, 375, 471, 740, 779, 885, 1099
DpnII	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
DraI	TTTAAA	3 cut(s)	112, 151, 1833
Eam1104I	CTCTTC	3 cut(s)	1430, 1561, 1865
EarI	CTCTTC	3 cut(s)	1430, 1561, 1865
EciI	GGCGGA	7 cut(s)	311, 704, 885, 945, 1097, 1427, 1456
Eco130I	CCWWGG	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	1915
Eco24I	GRGCYC	3 cut(s)	513, 649, 769
Eco32I	GATATC	1 cut(s)	206
Eco47I	GGWCC	4 cut(s)	805, 953, 1163, 1217
Eco57I	CTGAAG	2 cut(s)	1881, 1889
EcoO109I	RGGNCCY	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	812
EcoRII	CCWGG	4 cut(s)	345, 512, 591, 1007
EcoRV	GATATC	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	3 cut(s)	513, 649, 769
ErhI	CCWWGG	1 cut(s)	5
Esp3I	CGTCTC	1 cut(s)	318
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	1346
FauI	CCCGC	3 cut(s)	350, 500, 1120
FblI	GTMKAC	3 cut(s)	244, 986, 1574
FokI	GGATG	4 cut(s)	59, 374, 704, 1607
FriOI	GRGCYC	3 cut(s)	513, 649, 769
FspBI	CTAG	6 cut(s)	671, 1275, 1403, 1715, 1911, 1930
FspI	TGCGCA	1 cut(s)	635
GlaI	GCGC	4 cut(s)	635, 702, 752, 1033
GsaI	CCCAGC	2 cut(s)	1038, 1071
GsuI	CTGGAG	2 cut(s)	614, 1464
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	71, 335, 511, 1915
HapII	CCGG	5 cut(s)	450, 791, 817, 1166, 1496
HgaI	GACGC	2 cut(s)	1319, 1560
HhaI	GCGC	4 cut(s)	636, 703, 753, 1034
Hin1I	GRCGYC	4 cut(s)	247, 311, 989, 1571
Hin6I	GCGC	4 cut(s)	634, 701, 751, 1032
HinP1I	GCGC	4 cut(s)	634, 701, 751, 1032
HincII	GTYRAC	3 cut(s)	987, 1155, 1575
HindII	GTYRAC	3 cut(s)	987, 1155, 1575
HinfI	GANTC	6 cut(s)	10, 730, 837, 1211, 1381, 1687
HpaII	CCGG	5 cut(s)	450, 791, 817, 1166, 1496
HphI	GGTGA	3 cut(s)	496, 622, 1500
Hpy166II	GTNNAC	5 cut(s)	245, 987, 1155, 1508, 1575
Hpy188I	TCNGA	8 cut(s)	328, 621, 888, 934, 1335, 1345, 1445, 1686
Hpy8I	GTNNAC	5 cut(s)	245, 987, 1155, 1508, 1575
Hpy99I	CGWCG	9 cut(s)	252, 255, 313, 988, 991, 1568, 1576, 1579, 1769
HpyCH4III	ACNGT	7 cut(s)	34, 242, 524, 921, 1512, 1564, 1598
HpyCH4IV	ACGT	4 cut(s)	22, 247, 311, 989
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 68, 293, 302, 840, 1501, 1820
HpyF3I	CTNAG	7 cut(s)	66, 183, 620, 970, 1088, 1351, 1545
HpySE526I	ACGT	4 cut(s)	22, 247, 311, 989
Hsp92I	GRCGYC	4 cut(s)	247, 311, 989, 1571
HspAI	GCGC	4 cut(s)	634, 701, 751, 1032
Kpn2I	TCCGGA	1 cut(s)	449
KpnI	GGTACC	2 cut(s)	1050, 1803
KspI	CCGCGG	1 cut(s)	835
Kzo9I	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
LmnI	GCTCC	5 cut(s)	475, 595, 1084, 1117, 1498
Lsp1109I	GCAGC	9 cut(s)	65, 267, 317, 690, 1016, 1096, 1488, 1708, 1826
LweI	GCATC	7 cut(s)	169, 274, 499, 1054, 1826, 1849, 1869
MaeI	CTAG	6 cut(s)	671, 1275, 1403, 1715, 1911, 1930
MaeII	ACGT	4 cut(s)	22, 247, 311, 989
MaeIII	GTNAC	2 cut(s)	524, 662
MalI	GATC	8 cut(s)	127, 368, 375, 471, 740, 779, 885, 1099
MboI	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
MboII	GAAGA	9 cut(s)	491, 850, 989, 1331, 1402, 1417, 1548, 1682, 1882
MfeI	CAATTG	1 cut(s)	1923
MflI	RGATCY	1 cut(s)	1097
MhlI	GDGCHC	4 cut(s)	513, 568, 649, 769
MluCI	AATT	9 cut(s)	812, 902, 935, 1138, 1145, 1189, 1368, 1406, 1923
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	3 cut(s)	306, 1468, 1766
MroI	TCCGGA	1 cut(s)	449
MroXI	GAANNNNTTC	3 cut(s)	90, 921, 1667
MseI	TTAA	6 cut(s)	111, 122, 150, 1014, 1647, 1832
MspA1I	CMGCKG	2 cut(s)	834, 1160
MspI	CCGG	5 cut(s)	450, 791, 817, 1166, 1496
MspR9I	CCNGG	5 cut(s)	347, 514, 593, 1009, 1167
MunI	CAATTG	1 cut(s)	1923
MvaI	CCWGG	4 cut(s)	347, 514, 593, 1009
MvnI	CGCG	1 cut(s)	834
MwoI	GCNNNNNNNGC	7 cut(s)	59, 68, 293, 302, 840, 1501, 1820
NciI	CCSGG	1 cut(s)	1167
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
NlaIV	GGNNCC	8 cut(s)	158, 511, 579, 676, 1027, 1048, 1099, 1801
NmeAIII	GCCGAG	2 cut(s)	416, 748
NsbI	TGCGCA	1 cut(s)	635
NspI	RCATGY	3 cut(s)	53, 670, 1714
PaeI	GCATGC	2 cut(s)	53, 1714
PaqCI	CACCTGC	1 cut(s)	1037
PceI	AGGCCT	1 cut(s)	1915
PdmI	GAANNNNTTC	3 cut(s)	90, 921, 1667
PfeI	GAWTC	5 cut(s)	730, 837, 1211, 1381, 1687
Pfl23II	CGTACG	1 cut(s)	773
PflFI	GACNNNGTC	1 cut(s)	249
Ple19I	CGATCG	1 cut(s)	886
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp6I	CCWGG	4 cut(s)	345, 512, 591, 1007
PspFI	CCCAGC	2 cut(s)	1034, 1067
PspGI	CCWGG	4 cut(s)	345, 512, 591, 1007
PspLI	CGTACG	1 cut(s)	773
PspN4I	GGNNCC	8 cut(s)	158, 511, 579, 676, 1027, 1048, 1099, 1801
PspOMI	GGGCCC	1 cut(s)	509
PspPI	GGNCC	6 cut(s)	509, 510, 805, 953, 1163, 1217
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	1 cut(s)	1820
PsuI	RGATCY	1 cut(s)	1097
PsyI	GACNNNGTC	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	886
RsaI	GTAC	3 cut(s)	775, 1048, 1801
RsaNI	GTAC	3 cut(s)	774, 1047, 1800
SacII	CCGCGG	1 cut(s)	835
SalI	GTCGAC	2 cut(s)	985, 1573
SaqAI	TTAA	6 cut(s)	111, 122, 150, 1014, 1647, 1832
Sau3AI	GATC	8 cut(s)	125, 366, 373, 469, 738, 777, 883, 1097
Sau96I	GGNCC	6 cut(s)	509, 510, 805, 953, 1163, 1217
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	5 cut(s)	347, 514, 593, 1009, 1167
SduI	GDGCHC	4 cut(s)	513, 568, 649, 769
SfaNI	GCATC	7 cut(s)	169, 274, 499, 1054, 1826, 1849, 1869
SfcI	CTRYAG	1 cut(s)	1002
Sfr303I	CCGCGG	1 cut(s)	835
SgrBI	CCGCGG	1 cut(s)	835
SgrDI	CGTCGACG	2 cut(s)	985, 1573
SinI	GGWCC	4 cut(s)	805, 953, 1163, 1217
SmlI	CTYRAG	2 cut(s)	225, 1385
SmoI	CTYRAG	2 cut(s)	225, 1385
SphI	GCATGC	2 cut(s)	53, 1714
Sse9I	AATT	9 cut(s)	812, 902, 935, 1138, 1145, 1189, 1368, 1406, 1923
SseBI	AGGCCT	1 cut(s)	1915
SspMI	CTAG	6 cut(s)	671, 1275, 1403, 1715, 1911, 1930
StuI	AGGCCT	1 cut(s)	1915
StyD4I	CCNGG	5 cut(s)	345, 512, 591, 1007, 1165
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	7 cut(s)	34, 242, 524, 921, 1512, 1564, 1598
TaiI	ACGT	4 cut(s)	25, 250, 314, 992
TasI	AATT	9 cut(s)	812, 902, 935, 1138, 1145, 1189, 1368, 1406, 1923
TauI	GCSGC	4 cut(s)	296, 443, 834, 1082
TfiI	GAWTC	5 cut(s)	730, 837, 1211, 1381, 1687
Tru1I	TTAA	6 cut(s)	111, 122, 150, 1014, 1647, 1832
Tru9I	TTAA	6 cut(s)	111, 122, 150, 1014, 1647, 1832
TscAI	CASTG	5 cut(s)	37, 423, 978, 1601, 1765
TseI	GCWGC	9 cut(s)	53, 255, 305, 703, 1004, 1109, 1501, 1721, 1814
TspDTI	ATGAA	2 cut(s)	491, 837
TspGWI	ACGGA	3 cut(s)	1104, 1518, 1689
TspRI	CASTG	5 cut(s)	37, 423, 978, 1601, 1765
Tth111I	GACNNNGTC	1 cut(s)	249
VpaK11BI	GGWCC	4 cut(s)	805, 953, 1163, 1217
XapI	RAATTY	1 cut(s)	812
XceI	RCATGY	3 cut(s)	53, 670, 1714
XcmI	CCANNNNNNNNNTGG	3 cut(s)	343, 415, 970
XmiI	GTMKAC	3 cut(s)	244, 986, 1574
XmnI	GAANNNNTTC	3 cut(s)	90, 921, 1667
XspI	CTAG	6 cut(s)	671, 1275, 1403, 1715, 1911, 1930
ZraI	GACGTC	3 cut(s)	248, 312, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.