Rmu_sc0003863.1_g000009

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003863.1
OG0000123
Physical Location & Seq
Reverse (-)
60803 .. 62035
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003863.1_g000009.1.cds

Sequence Viewer

Length: 1233 bp
atggcggaggagacggtggctccttctgcaccttttgaggaggcttttgtgagccttgttggcggagaagatacgatgcatgattcatttttctacctttgtgggcggctactgtctaagaaggtggtggtgctcccatcattcttggtagcgatctccaatgtatggggactaagggagagagttttgatccgacaagaggaggacgacatcttcgtctttcaattcaaagacagggctgtcaaggataggattctttcaaggagtccatggttctataacaattccatgttgttgctggccgactatgatggcgtttctgatctcaaggtcgctccgctgcatctccttgaggtatgggtggcggcgaagggtttgcgcatcgctatgcgcaatgagaaagatttaactatgatcggacgggcgttggggacctttgttggggttgatcagggggcggtgcagaggaaggacccggttcagagggtccgtgtgttgcatgatattcgtcggaggatctgggcaaaacgggtgtttgggttttcaacagccgtgtcagtgttggttgagctccagtacgagaagtgccatgggctctgtgctgcgtgtggtttctttggacatggcagaggtgtgtgtgataggaggttggagatggaggcactgccgctggcagtgtcggactgtgaaggtgcaaatcgtgggctgagatcgacgcagtgttcgcggacttctgtggctgcgtttggcggtctggggacttcccatgcggcgtcgaaggggttggcggtgctggaaagggcggaaaaaacggtggcgggcttgggatcggctgctgctgcaagtgcaactcgggtaattcctgaaatctcggcgggaaaccctaattcaaaattagggttgactactggggtggatgggttgactgggccagagctgcagattggtgggttaggcctcaattatgctggtgcagacctgggacctatttctgctgagagacattcgaaggcggccttggctgtaaagagaaagcagttcaagccaagtttagctattataccacgggagtttcagctaggtgaattggtggaggttccggtttctttgggcccaactccaaagaaaaggggtcatcctcgcaagtatacgttggcaaaagaaattgaaggtcataatgcagattcggatataagctccaacttgatagggaaggagctgtttattgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

410

Amino Acids

44.42

Weight (kDa)

8.99

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 215, 239
Acc16I TGCGCA 2 cut(s) 380, 392
AccB7I CCANNNNNTGG 1 cut(s) 165
AccI GTMKAC 1 cut(s) 1148
AccII CGCG 1 cut(s) 727
AclWI GGATC 3 cut(s) 184, 524, 835
AcoI YGGCCR 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 773
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 3 cut(s) 165, 199, 441
AgsI TTSAA 7 cut(s) 224, 229, 261, 546, 891, 1042, 1169
AjnI CCWGG 1 cut(s) 978
AjuI GAANNNNNNNTTGG 2 cut(s) 1001, 1033
AluBI AGCT 6 cut(s) 571, 937, 1055, 1078, 1197, 1219
AluI AGCT 6 cut(s) 571, 937, 1055, 1078, 1197, 1219
Alw21I GWGCWC 2 cut(s) 135, 573
Alw26I GTCTC 2 cut(s) 5, 994
AlwI GGATC 3 cut(s) 184, 524, 835
Ama87I CYCGRG 1 cut(s) 852
AoxI GGCC 5 cut(s) 300, 929, 955, 1014, 1111
ApaI GGGCCC 1 cut(s) 1115
ApeKI GCWGC 7 cut(s) 340, 602, 740, 833, 836, 839, 937
ArsI GACNNNNNNTTYG 4 cut(s) 197, 229, 706, 738
AspLEI GCGC 2 cut(s) 381, 393
AspS9I GGNCC 7 cut(s) 432, 472, 487, 929, 983, 1111, 1112
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 1094
AsuII TTCGAA 1 cut(s) 1007
AvaI CYCGRG 1 cut(s) 852
AvaII GGWCC 4 cut(s) 432, 472, 487, 983
BaeGI GKGCMC 1 cut(s) 1115
BanII GRGCYC 3 cut(s) 573, 597, 1115
Bbv12I GWGCWC 2 cut(s) 135, 573
BbvI GCAGC 7 cut(s) 327, 589, 727, 820, 823, 826, 924
BccI CCATC 4 cut(s) 145, 305, 649, 911
BceAI ACGGC 1 cut(s) 536
BcgI CGANNNNNNTGC 4 cut(s) 358, 392, 488, 522
BciT130I CCWGG 1 cut(s) 980
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 476
BcoDI GTCTC 2 cut(s) 5, 994
BfaI CTAG 1 cut(s) 1079
BfmI CTRYAG 1 cut(s) 938
BglI GCCNNNNNGGC 1 cut(s) 60
Bme1390I CCNGG 2 cut(s) 476, 980
Bme18I GGWCC 4 cut(s) 432, 472, 487, 983
BmeT110I CYCGRG 1 cut(s) 852
BmgT120I GGNCC 7 cut(s) 432, 472, 487, 929, 983, 1111, 1112
BmiI GGNNCC 7 cut(s) 21, 433, 474, 488, 984, 1098, 1113
BmrFI CCNGG 2 cut(s) 476, 980
BmrI ACTGGG 2 cut(s) 918, 936
BmsI GCATC 3 cut(s) 66, 352, 390
BmuI ACTGGG 2 cut(s) 918, 936
BpmI CTGGAG 1 cut(s) 557
Bpu14I TTCGAA 1 cut(s) 1007
BpuEI CTTGAG 2 cut(s) 311, 371
BpuMI CCSGG 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 773
BsaJI CCNNGG 5 cut(s) 269, 589, 979, 1017, 1064
BsaWI WCCGGW 1 cut(s) 1099
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 199, 441
Bse1I ACTGG 3 cut(s) 574, 913, 931
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 5 cut(s) 269, 589, 979, 1017, 1064
BseGI GGATG 2 cut(s) 922, 1135
BseLI CCNNNNNNNGG 3 cut(s) 165, 199, 441
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 2 cut(s) 698, 987
BseNI ACTGG 3 cut(s) 574, 913, 931
BseRI GAGGAG 3 cut(s) 23, 53, 215
BseSI GKGCMC 1 cut(s) 1115
BseXI GCAGC 7 cut(s) 327, 589, 727, 820, 823, 826, 924
BsgI GTGCAG 3 cut(s) 12, 482, 993
Bsh1236I CGCG 1 cut(s) 727
BshFI GGCC 5 cut(s) 302, 931, 957, 1016, 1113
BsiHKAI GWGCWC 2 cut(s) 135, 573
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 2 cut(s) 476, 1100
BslFI GGGAC 4 cut(s) 183, 445, 772, 996
BslI CCNNNNNNNGG 3 cut(s) 165, 199, 441
BsmAI GTCTC 2 cut(s) 5, 994
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 4 cut(s) 183, 445, 772, 996
BsnI GGCC 5 cut(s) 302, 931, 957, 1016, 1113
BsoBI CYCGRG 1 cut(s) 852
Bsp119I TTCGAA 1 cut(s) 1007
Bsp120I GGGCCC 1 cut(s) 1111
Bsp1286I GDGCHC 4 cut(s) 135, 573, 597, 1115
Bsp143I GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
Bsp19I CCATGG 2 cut(s) 269, 589
BspANI GGCC 5 cut(s) 302, 931, 957, 1016, 1113
BspCNI CTCAG 2 cut(s) 699, 988
BspFNI CGCG 1 cut(s) 727
BspLI GGNNCC 7 cut(s) 21, 433, 474, 488, 984, 1098, 1113
BspMAI CTGCAG 1 cut(s) 942
BspPI GGATC 3 cut(s) 184, 524, 835
BspT104I TTCGAA 1 cut(s) 1007
BsrDI GCAATG 1 cut(s) 400
BsrI ACTGG 3 cut(s) 574, 913, 931
BssECI CCNNGG 5 cut(s) 269, 589, 979, 1017, 1064
BssMI GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
BssNAI GTATAC 1 cut(s) 1149
BssNI GRCGYC 1 cut(s) 773
BssT1I CCWWGG 3 cut(s) 269, 589, 1017
Bst1107I GTATAC 1 cut(s) 1149
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 4 cut(s) 16, 114, 686, 814
BstACI GRCGYC 1 cut(s) 773
BstBI TTCGAA 1 cut(s) 1007
BstC8I GCNNGC 3 cut(s) 300, 672, 820
BstDEI CTNAG 4 cut(s) 117, 173, 707, 996
BstDSI CCRYGG 3 cut(s) 269, 589, 1064
BstF5I GGATG 2 cut(s) 922, 1135
BstFNI CGCG 1 cut(s) 727
BstHHI GCGC 2 cut(s) 381, 393
BstKTI GATC 8 cut(s) 156, 192, 325, 417, 451, 519, 713, 830
BstMAI GTCTC 2 cut(s) 5, 994
BstMBI GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
BstMWI GCNNNNNNNGC 8 cut(s) 26, 60, 724, 839, 845, 937, 1019, 1042
BstNI CCWGG 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 474, 978
BstSFI CTRYAG 1 cut(s) 938
BstSLI GKGCMC 1 cut(s) 1115
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 7 cut(s) 327, 589, 727, 820, 823, 826, 924
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BstZ17I GTATAC 1 cut(s) 1149
BsuRI GGCC 5 cut(s) 302, 931, 957, 1016, 1113
BtgI CCRYGG 3 cut(s) 269, 589, 1064
BtgZI GCGATG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 922, 1135
BtsI GCAGTG 3 cut(s) 662, 681, 725
BtsIMutI CAGTG 4 cut(s) 564, 662, 681, 725
Cac8I GCNNGC 3 cut(s) 300, 672, 820
CfoI GCGC 2 cut(s) 381, 393
Cfr13I GGNCC 7 cut(s) 432, 472, 487, 929, 983, 1111, 1112
CseI GACGC 2 cut(s) 724, 762
Csp6I GTAC 1 cut(s) 577
CviAII CATG 7 cut(s) 80, 270, 289, 500, 590, 623, 767
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 4 cut(s) 117, 173, 707, 996
DpnI GATC 8 cut(s) 155, 191, 324, 416, 450, 518, 712, 829
DpnII GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
DrdI GACNNNNNNGTC 2 cut(s) 215, 239
DseDI GACNNNNNNGTC 2 cut(s) 215, 239
EaeI YGGCCR 1 cut(s) 300
EciI GGCGGA 3 cut(s) 20, 78, 818
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 3 cut(s) 269, 589, 1017
Eco147I AGGCCT 1 cut(s) 957
Eco24I GRGCYC 3 cut(s) 573, 597, 1115
Eco47I GGWCC 4 cut(s) 432, 472, 487, 983
Eco53kI GAGCTC 1 cut(s) 571
Eco88I CYCGRG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 571
EcoO109I RGGNCCY 3 cut(s) 432, 472, 983
EcoRII CCWGG 1 cut(s) 978
EcoT14I CCWWGG 3 cut(s) 269, 589, 1017
EcoT22I ATGCAT 1 cut(s) 81
EcoT38I GRGCYC 3 cut(s) 573, 597, 1115
ErhI CCWWGG 3 cut(s) 269, 589, 1017
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 7 cut(s) 83, 273, 292, 503, 593, 626, 770
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FaqI GGGAC 4 cut(s) 183, 445, 772, 996
FatI CATG 7 cut(s) 79, 269, 288, 499, 589, 622, 766
FauI CCCGC 2 cut(s) 811, 868
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 1148
FokI GGATG 2 cut(s) 929, 1122
FriOI GRGCYC 3 cut(s) 573, 597, 1115
FspBI CTAG 1 cut(s) 1079
FspI TGCGCA 2 cut(s) 380, 392
GlaI GCGC 2 cut(s) 380, 392
GsuI CTGGAG 1 cut(s) 557
HaeIII GGCC 5 cut(s) 302, 931, 957, 1016, 1113
HapII CCGG 2 cut(s) 476, 1100
HgaI GACGC 2 cut(s) 724, 762
HhaI GCGC 2 cut(s) 381, 393
Hin1I GRCGYC 1 cut(s) 773
Hin1II CATG 7 cut(s) 83, 273, 292, 503, 593, 626, 770
Hin6I GCGC 2 cut(s) 379, 391
HinP1I GCGC 2 cut(s) 379, 391
HincII GTYRAC 2 cut(s) 903, 924
HindII GTYRAC 2 cut(s) 903, 924
HinfI GANTC 4 cut(s) 83, 253, 265, 1184
HpaII CCGG 2 cut(s) 476, 1100
HphI GGTGA 1 cut(s) 1094
Hpy166II GTNNAC 3 cut(s) 903, 924, 1149
Hpy188I TCNGA 7 cut(s) 194, 322, 419, 483, 513, 682, 1189
Hpy188III TCNNGA 1 cut(s) 863
Hpy8I GTNNAC 3 cut(s) 903, 924, 1149
Hpy99I CGWCG 3 cut(s) 513, 718, 778
HpyAV CCTTC 9 cut(s) 33, 115, 364, 463, 683, 772, 1003, 1163, 1207
HpyCH4III ACNGT 4 cut(s) 16, 114, 686, 814
HpyCH4IV ACGT 1 cut(s) 1151
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 60, 724, 839, 845, 937, 1019, 1042
HpyF3I CTNAG 4 cut(s) 117, 173, 707, 996
HpySE526I ACGT 1 cut(s) 1151
Hsp92I GRCGYC 1 cut(s) 773
Hsp92II CATG 7 cut(s) 83, 273, 292, 503, 593, 626, 770
HspAI GCGC 2 cut(s) 379, 391
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
LmnI GCTCC 6 cut(s) 25, 138, 340, 576, 1202, 1216
Lsp1109I GCAGC 7 cut(s) 327, 589, 727, 820, 823, 826, 924
LweI GCATC 3 cut(s) 66, 352, 390
MaeI CTAG 1 cut(s) 1079
MaeII ACGT 1 cut(s) 1151
MalI GATC 8 cut(s) 155, 191, 324, 416, 450, 518, 712, 829
MboI GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
MboII GAAGA 2 cut(s) 80, 205
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 4 cut(s) 135, 573, 597, 1115
MluCI AATT 8 cut(s) 224, 283, 858, 886, 893, 961, 1085, 1164
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 5 cut(s) 217, 491, 630, 660, 1224
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 2 cut(s) 340, 670
MspI CCGG 2 cut(s) 476, 1100
MspR9I CCNGG 2 cut(s) 476, 980
MvaI CCWGG 1 cut(s) 980
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 8 cut(s) 26, 60, 724, 839, 845, 937, 1019, 1042
NciI CCSGG 1 cut(s) 476
NcoI CCATGG 2 cut(s) 269, 589
NdeII GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
NlaIII CATG 7 cut(s) 83, 273, 292, 503, 593, 626, 770
NlaIV GGNNCC 7 cut(s) 21, 433, 474, 488, 984, 1098, 1113
NmeAIII GCCGAG 1 cut(s) 851
NsbI TGCGCA 2 cut(s) 380, 392
NsiI ATGCAT 1 cut(s) 81
NspV TTCGAA 1 cut(s) 1007
PceI AGGCCT 1 cut(s) 957
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 3 cut(s) 83, 253, 1184
PflMI CCANNNNNTGG 1 cut(s) 165
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PpuMI RGGWCCY 3 cut(s) 432, 472, 983
Psp124BI GAGCTC 1 cut(s) 573
Psp5II RGGWCCY 3 cut(s) 432, 472, 983
Psp6I CCWGG 1 cut(s) 978
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 7 cut(s) 21, 433, 474, 488, 984, 1098, 1113
PspOMI GGGCCC 1 cut(s) 1111
PspPI GGNCC 7 cut(s) 432, 472, 487, 929, 983, 1111, 1112
PspPPI RGGWCCY 3 cut(s) 432, 472, 983
PstI CTGCAG 1 cut(s) 942
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 407
Sau3AI GATC 8 cut(s) 153, 189, 322, 414, 448, 516, 710, 827
Sau96I GGNCC 7 cut(s) 432, 472, 487, 929, 983, 1111, 1112
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 2 cut(s) 476, 980
SduI GDGCHC 4 cut(s) 135, 573, 597, 1115
SfaNI GCATC 3 cut(s) 66, 352, 390
SfcI CTRYAG 1 cut(s) 938
SfuI TTCGAA 1 cut(s) 1007
SinI GGWCC 4 cut(s) 432, 472, 487, 983
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 326, 350
SmoI CTYRAG 2 cut(s) 326, 350
Sse9I AATT 8 cut(s) 224, 283, 858, 886, 893, 961, 1085, 1164
SseBI AGGCCT 1 cut(s) 957
SspMI CTAG 1 cut(s) 1079
SstI GAGCTC 1 cut(s) 573
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 2 cut(s) 474, 978
StyI CCWWGG 3 cut(s) 269, 589, 1017
TaaI ACNGT 4 cut(s) 16, 114, 686, 814
TaiI ACGT 1 cut(s) 1154
TaqI TCGA 3 cut(s) 713, 776, 1007
TasI AATT 8 cut(s) 224, 283, 858, 886, 893, 961, 1085, 1164
TauI GCSGC 5 cut(s) 109, 368, 670, 773, 1016
TfiI GAWTC 3 cut(s) 83, 253, 1184
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 4 cut(s) 564, 669, 681, 725
TseI GCWGC 7 cut(s) 340, 602, 740, 833, 836, 839, 937
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 4 cut(s) 564, 669, 681, 725
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 4 cut(s) 432, 472, 487, 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 1148
XspI CTAG 1 cut(s) 1079
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.