FvH4_6g38140

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000123
Physical Location & Seq
Forward (+)
30188578 .. 30189834
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38140.t1

Sequence Viewer

Length: 786 bp
ATGGCGGCGGACGGAGTAGTAGCTTCTCCTAACCTGCCACCAGAGGTGGCTGTGGTGAGCCTAGAAGGGGACATTTGGAGGCTGAGAGTGAAACTGTCAATCCATGAGGAGGAGAACGGAGTTTTCGTTTTTCCAATTCAAGGACAAGAAGAGAAGATTCGGGTTCTTGAGAGAGGTCCATGGTTCTTCAACAATAACATGCTTTTGTTGGCGAATTATAATGGAGTTAGCAACTTAGCCCATGTTCCACTACATTTCATGGAACTTTGGGTTGATGTGAAGGGGTTCAAGACCTATCGGCGTTGCAGCGGAAGGATCCAGTCCAGCGGATTCGTCTGGTCCATGACGTTCGGTGAAGGATTTTGGCTTGTCGGTCCTTCTTCTTCTCACCGGATCTCTCTGGCGATTGCAGCGGCGGAGGATGGGACGTTGGTCGAGCCGGTTGCAGCGGCAAGGTTTTCTCAGCATGAGGGAAACCCTAGCAAGGTTGCTTGGGCCGTCGATGTTGGAGGCGGTGGGGACGAATGTGGTGGCGTCACCAGAAACCTTAGTTTTGAACTAGGGTTGACCACTGAAAAATGGGTTGGGTTGACTGGGCCTATAGGTGGGCTAATGGTGGCTAAGGCTGATTTGGAGAAGGCTGGGGACATTGGGTCTGCTGCTGCTGGTGTTACCAAGAACAAGAAGCAACAGGCTAGTAAGCAATTTGAGGCGTCTGTGACTCTTAATATTGTTTATCAGCATGCACCTCCTAGCCCTTTAGCCAAAGGCAAAGAGAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

262

Amino Acids

28.08

Weight (kDa)

6.32

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 25 - 74 1.2e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 42
AciI CCGC 8 cut(s) 5, 8, 309, 327, 413, 416, 449, 513
AclWI GGATC 3 cut(s) 310, 323, 401
AcyI GRCGYC 2 cut(s) 534, 713
AfiI CCNNNNNNNGG 5 cut(s) 67, 109, 140, 484, 605
AgsI TTSAA 4 cut(s) 140, 190, 289, 557
AhdI GACNNNNNGTC 1 cut(s) 652
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 3 cut(s) 310, 323, 401
AoxI GGCC 2 cut(s) 495, 596
ApeKI GCWGC 5 cut(s) 306, 410, 446, 659, 662
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 5 cut(s) 176, 339, 374, 495, 596
AsuHPI GGTGA 4 cut(s) 67, 365, 380, 529
AvaII GGWCC 3 cut(s) 176, 339, 374
BamHI GGATCC 1 cut(s) 315
BbvI GCAGC 5 cut(s) 318, 422, 458, 646, 649
BccI CCATC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 482
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BfaI CTAG 5 cut(s) 62, 480, 560, 696, 753
BfmI CTRYAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 8 cut(s) 6, 307, 411, 414, 447, 450, 660, 663
BlsI GCNGC 8 cut(s) 7, 308, 412, 415, 448, 451, 661, 664
Bme18I GGWCC 3 cut(s) 176, 339, 374
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 5 cut(s) 176, 339, 374, 495, 596
BmiI GGNNCC 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 603
BmuI ACTGGG 1 cut(s) 603
BoxI GACNNNNGTC 1 cut(s) 431
Bpu10I CCTNAGC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 2 cut(s) 534, 713
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 109, 140, 484, 605
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 2 cut(s) 319, 598
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 5 cut(s) 67, 109, 140, 484, 605
BseMII CTCAG 2 cut(s) 74, 476
BseNI ACTGG 2 cut(s) 319, 598
BseRI GAGGAG 2 cut(s) 122, 125
BseXI GCAGC 5 cut(s) 318, 422, 458, 646, 649
BseYI CCCAGC 1 cut(s) 641
BshFI GGCC 2 cut(s) 497, 598
BsiSI CCGG 2 cut(s) 391, 440
BslFI GGGAC 4 cut(s) 83, 439, 533, 659
BslI CCNNNNNNNGG 5 cut(s) 67, 109, 140, 484, 605
BsmFI GGGAC 4 cut(s) 83, 439, 533, 659
BsnI GGCC 2 cut(s) 497, 598
Bsp143I GATC 2 cut(s) 315, 393
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 8 cut(s) 5, 8, 309, 327, 413, 416, 449, 513
BspANI GGCC 2 cut(s) 497, 598
BspCNI CTCAG 2 cut(s) 75, 475
BspLI GGNNCC 1 cut(s) 317
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 3 cut(s) 310, 323, 401
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 2 cut(s) 319, 598
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 315, 393
BssNI GRCGYC 2 cut(s) 534, 713
BssT1I CCWWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 2 cut(s) 534, 713
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 5 cut(s) 83, 235, 462, 548, 621
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 2 cut(s) 318, 396
BstMBI GATC 2 cut(s) 315, 393
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNSI RCATGY 2 cut(s) 202, 746
BstPAI GACNNNNGTC 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 5 cut(s) 318, 422, 458, 646, 649
BstX2I RGATCY 2 cut(s) 315, 393
BstYI RGATCY 2 cut(s) 315, 393
BsuRI GGCC 2 cut(s) 497, 598
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 570
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 744
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 5 cut(s) 176, 339, 374, 495, 596
CseI GACGC 2 cut(s) 523, 702
CviAII CATG 8 cut(s) 104, 180, 199, 242, 259, 343, 467, 743
DdeI CTNAG 5 cut(s) 83, 235, 462, 548, 621
DpnI GATC 2 cut(s) 317, 395
DpnII GATC 2 cut(s) 315, 393
DriI GACNNNNNGTC 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 2 cut(s) 23, 431
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 3 cut(s) 176, 339, 374
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 8 cut(s) 107, 183, 202, 245, 262, 346, 470, 746
FaqI GGGAC 4 cut(s) 83, 439, 533, 659
FatI CATG 8 cut(s) 103, 179, 198, 241, 258, 342, 466, 742
Fnu4HI GCNGC 8 cut(s) 6, 307, 411, 414, 447, 450, 660, 663
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 8 cut(s) 6, 307, 411, 414, 447, 450, 660, 663
FspBI CTAG 5 cut(s) 62, 480, 560, 696, 753
GluI GCNGC 8 cut(s) 6, 307, 411, 414, 447, 450, 660, 663
GsaI CCCAGC 1 cut(s) 645
HaeIII GGCC 2 cut(s) 497, 598
HapII CCGG 2 cut(s) 391, 440
HgaI GACGC 2 cut(s) 523, 702
Hin1I GRCGYC 2 cut(s) 534, 713
Hin1II CATG 8 cut(s) 107, 183, 202, 245, 262, 346, 470, 746
HincII GTYRAC 2 cut(s) 567, 591
HindII GTYRAC 2 cut(s) 567, 591
HinfI GANTC 3 cut(s) 157, 330, 721
HpaII CCGG 2 cut(s) 391, 440
HphI GGTGA 4 cut(s) 67, 365, 380, 529
Hpy166II GTNNAC 2 cut(s) 567, 591
Hpy188III TCNNGA 2 cut(s) 167, 289
Hpy8I GTNNAC 2 cut(s) 567, 591
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 6 cut(s) 59, 274, 306, 350, 387, 631
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 347, 428
HpyCH4V TGCA 4 cut(s) 306, 410, 446, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 5 cut(s) 83, 235, 462, 548, 621
HpySE526I ACGT 2 cut(s) 347, 428
Hsp92I GRCGYC 2 cut(s) 534, 713
Hsp92II CATG 8 cut(s) 107, 183, 202, 245, 262, 346, 470, 746
Kzo9I GATC 2 cut(s) 315, 393
Lsp1109I GCAGC 5 cut(s) 318, 422, 458, 646, 649
MaeI CTAG 5 cut(s) 62, 480, 560, 696, 753
MaeII ACGT 2 cut(s) 347, 428
MaeIII GTNAC 3 cut(s) 535, 670, 718
MalI GATC 2 cut(s) 317, 395
MboI GATC 2 cut(s) 315, 393
MboII GAAGA 5 cut(s) 161, 166, 178, 372, 375
MflI RGATCY 2 cut(s) 315, 393
MluCI AATT 3 cut(s) 135, 214, 704
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 2 cut(s) 726, 784
MspA1I CMGCKG 4 cut(s) 309, 327, 413, 449
MspI CCGG 2 cut(s) 391, 440
MwoI GCNNNNNNNGC 1 cut(s) 410
NcoI CCATGG 1 cut(s) 179
NdeII GATC 2 cut(s) 315, 393
NlaIII CATG 8 cut(s) 107, 183, 202, 245, 262, 346, 470, 746
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 535, 718
NspI RCATGY 2 cut(s) 202, 746
PaeI GCATGC 1 cut(s) 746
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 157, 330
PkrI GCNGC 8 cut(s) 7, 308, 412, 415, 448, 451, 661, 664
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PshAI GACNNNNGTC 1 cut(s) 431
PsiI TTATAA 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 5 cut(s) 176, 339, 374, 495, 596
PsuI RGATCY 2 cut(s) 315, 393
SaqAI TTAA 2 cut(s) 726, 784
SatI GCNGC 8 cut(s) 6, 307, 411, 414, 447, 450, 660, 663
Sau3AI GATC 2 cut(s) 315, 393
Sau96I GGNCC 5 cut(s) 176, 339, 374, 495, 596
SchI GAGTC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 3 cut(s) 176, 339, 374
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SphI GCATGC 1 cut(s) 746
Sse9I AATT 3 cut(s) 135, 214, 704
SsiI CCGC 8 cut(s) 5, 8, 309, 327, 413, 416, 449, 513
SspI AATATT 1 cut(s) 730
SspMI CTAG 5 cut(s) 62, 480, 560, 696, 753
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 350, 431
TaqI TCGA 2 cut(s) 435, 501
TaqII GACCGA 1 cut(s) 362
TasI AATT 3 cut(s) 135, 214, 704
TauI GCSGC 3 cut(s) 8, 416, 452
TfiI GAWTC 2 cut(s) 157, 330
Tru1I TTAA 2 cut(s) 726, 784
Tru9I TTAA 2 cut(s) 726, 784
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 2 cut(s) 535, 718
TseI GCWGC 5 cut(s) 306, 410, 446, 659, 662
Tsp45I GTSAC 2 cut(s) 535, 718
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 2 cut(s) 27, 132
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 176, 339, 374
XceI RCATGY 2 cut(s) 202, 746
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 5 cut(s) 62, 480, 560, 696, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.