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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 190 |
| Acc36I | ACCTGC | 1 cut(s) | 190 |
| AccII | CGCG | 1 cut(s) | 148 |
| AciI | CCGC | 5 cut(s) | 99, 228, 350, 524, 551 |
| AclWI | GGATC | 2 cut(s) | 42, 294 |
| AcsI | RAATTY | 1 cut(s) | 307 |
| AfaI | GTAC | 1 cut(s) | 329 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 130, 193, 289 |
| AflIII | ACRYGT | 1 cut(s) | 146 |
| AgsI | TTSAA | 2 cut(s) | 140, 484 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AluBI | AGCT | 1 cut(s) | 473 |
| AluI | AGCT | 1 cut(s) | 473 |
| AlwI | GGATC | 2 cut(s) | 42, 294 |
| AoxI | GGCC | 3 cut(s) | 486, 521, 529 |
| ApeKI | GCWGC | 1 cut(s) | 429 |
| ApoI | RAATTY | 1 cut(s) | 307 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 148 |
| AspLEI | GCGC | 1 cut(s) | 460 |
| AspS9I | GGNCC | 1 cut(s) | 530 |
| AsuC2I | CCSGG | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 2 cut(s) | 214, 463 |
| BbsI | GAAGAC | 1 cut(s) | 175 |
| BbvI | GCAGC | 1 cut(s) | 416 |
| BccI | CCATC | 7 cut(s) | 110, 269, 415, 419, 448, 490, 566 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BcnI | CCSGG | 1 cut(s) | 284 |
| BfmI | CTRYAG | 1 cut(s) | 391 |
| BfoI | RGCGCY | 1 cut(s) | 461 |
| BfuAI | ACCTGC | 1 cut(s) | 190 |
| BisI | GCNGC | 3 cut(s) | 99, 430, 524 |
| BlsI | GCNGC | 3 cut(s) | 100, 431, 525 |
| Bme1390I | CCNGG | 2 cut(s) | 284, 528 |
| BmgT120I | GGNCC | 1 cut(s) | 530 |
| BmrFI | CCNGG | 2 cut(s) | 284, 528 |
| BmsI | GCATC | 4 cut(s) | 27, 64, 243, 396 |
| BpiI | GAAGAC | 1 cut(s) | 175 |
| BpuMI | CCSGG | 1 cut(s) | 284 |
| BsaJI | CCNNGG | 1 cut(s) | 382 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 130, 193, 289 |
| Bse1I | ACTGG | 1 cut(s) | 187 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseDI | CCNNGG | 1 cut(s) | 382 |
| BseGI | GGATG | 5 cut(s) | 79, 426, 430, 508, 577 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 130, 193, 289 |
| BseMII | CTCAG | 1 cut(s) | 96 |
| BseNI | ACTGG | 1 cut(s) | 187 |
| BseRI | GAGGAG | 2 cut(s) | 19, 49 |
| BseXI | GCAGC | 1 cut(s) | 416 |
| Bsh1236I | CGCG | 1 cut(s) | 148 |
| Bsh1285I | CGRYCG | 1 cut(s) | 513 |
| BshFI | GGCC | 3 cut(s) | 488, 523, 531 |
| BsiEI | CGRYCG | 1 cut(s) | 513 |
| BsiSI | CCGG | 1 cut(s) | 283 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 130, 193, 289 |
| BsnI | GGCC | 3 cut(s) | 488, 523, 531 |
| Bsp143I | GATC | 3 cut(s) | 47, 154, 286 |
| Bsp19I | CCATGG | 1 cut(s) | 382 |
| BspACI | CCGC | 5 cut(s) | 99, 228, 350, 524, 551 |
| BspANI | GGCC | 3 cut(s) | 488, 523, 531 |
| BspCNI | CTCAG | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 148 |
| BspMI | ACCTGC | 1 cut(s) | 190 |
| BspPI | GGATC | 2 cut(s) | 42, 294 |
| BsrI | ACTGG | 1 cut(s) | 187 |
| BssECI | CCNNGG | 1 cut(s) | 382 |
| BssMI | GATC | 3 cut(s) | 47, 154, 286 |
| BssT1I | CCWWGG | 1 cut(s) | 382 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| Bst4CI | ACNGT | 3 cut(s) | 234, 451, 511 |
| Bst6I | CTCTTC | 1 cut(s) | 157 |
| BstDEI | CTNAG | 2 cut(s) | 82, 365 |
| BstDSI | CCRYGG | 1 cut(s) | 382 |
| BstF5I | GGATG | 5 cut(s) | 79, 426, 430, 508, 577 |
| BstFNI | CGCG | 1 cut(s) | 148 |
| BstH2I | RGCGCY | 1 cut(s) | 461 |
| BstHHI | GCGC | 1 cut(s) | 460 |
| BstKTI | GATC | 3 cut(s) | 50, 157, 289 |
| BstMBI | GATC | 3 cut(s) | 47, 154, 286 |
| BstMCI | CGRYCG | 1 cut(s) | 513 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 347, 485 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstSCI | CCNGG | 2 cut(s) | 282, 526 |
| BstSFI | CTRYAG | 1 cut(s) | 391 |
| BstUI | CGCG | 1 cut(s) | 148 |
| BstV1I | GCAGC | 1 cut(s) | 416 |
| BstV2I | GAAGAC | 1 cut(s) | 175 |
| BstX2I | RGATCY | 2 cut(s) | 47, 286 |
| BstYI | RGATCY | 2 cut(s) | 47, 286 |
| BsuRI | GGCC | 3 cut(s) | 488, 523, 531 |
| BtgI | CCRYGG | 1 cut(s) | 382 |
| BtsCI | GGATG | 5 cut(s) | 79, 426, 430, 508, 577 |
| BveI | ACCTGC | 1 cut(s) | 190 |
| CfoI | GCGC | 1 cut(s) | 460 |
| Cfr13I | GGNCC | 1 cut(s) | 530 |
| Csp6I | GTAC | 1 cut(s) | 328 |
| CviAII | CATG | 2 cut(s) | 383, 416 |
| CviJI | RGCY | 7 cut(s) | 399, 429, 473, 488, 523, 531, 582 |
| CviKI_1 | RGCY | 7 cut(s) | 399, 429, 473, 488, 523, 531, 582 |
| CviQI | GTAC | 1 cut(s) | 328 |
| DdeI | CTNAG | 2 cut(s) | 82, 365 |
| DpnI | GATC | 3 cut(s) | 49, 156, 288 |
| DpnII | GATC | 3 cut(s) | 47, 154, 286 |
| Eam1104I | CTCTTC | 1 cut(s) | 157 |
| EarI | CTCTTC | 1 cut(s) | 157 |
| Eco130I | CCWWGG | 1 cut(s) | 382 |
| Eco147I | AGGCCT | 1 cut(s) | 488 |
| EcoRI | GAATTC | 1 cut(s) | 307 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoT14I | CCWWGG | 1 cut(s) | 382 |
| ErhI | CCWWGG | 1 cut(s) | 382 |
| FaeI | CATG | 2 cut(s) | 386, 419 |
| FaiI | YATR | 7 cut(s) | 61, 273, 314, 372, 384, 393, 417 |
| FatI | CATG | 2 cut(s) | 382, 415 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 430, 524 |
| FokI | GGATG | 4 cut(s) | 86, 433, 437, 515 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 430, 524 |
| GlaI | GCGC | 1 cut(s) | 459 |
| GluI | GCNGC | 3 cut(s) | 99, 430, 524 |
| HaeII | RGCGCY | 1 cut(s) | 461 |
| HaeIII | GGCC | 3 cut(s) | 488, 523, 531 |
| HapII | CCGG | 1 cut(s) | 283 |
| HhaI | GCGC | 1 cut(s) | 460 |
| Hin1II | CATG | 2 cut(s) | 386, 419 |
| Hin6I | GCGC | 1 cut(s) | 458 |
| HinP1I | GCGC | 1 cut(s) | 458 |
| HinfI | GANTC | 1 cut(s) | 279 |
| HpaII | CCGG | 1 cut(s) | 283 |
| HphI | GGTGA | 2 cut(s) | 214, 463 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 4 cut(s) | 73, 85, 154, 306 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| Hpy99I | CGWCG | 1 cut(s) | 451 |
| HpyAV | CCTTC | 4 cut(s) | 134, 202, 458, 478 |
| HpyCH4III | ACNGT | 3 cut(s) | 234, 451, 511 |
| HpyCH4IV | ACGT | 1 cut(s) | 216 |
| HpyCH4V | TGCA | 3 cut(s) | 18, 127, 432 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 347, 485 |
| HpyF3I | CTNAG | 2 cut(s) | 82, 365 |
| HpySE526I | ACGT | 1 cut(s) | 216 |
| Hsp92II | CATG | 2 cut(s) | 386, 419 |
| HspAI | GCGC | 1 cut(s) | 458 |
| Kzo9I | GATC | 3 cut(s) | 47, 154, 286 |
| LmnI | GCTCC | 2 cut(s) | 36, 196 |
| Lsp1109I | GCAGC | 1 cut(s) | 416 |
| LweI | GCATC | 4 cut(s) | 27, 64, 243, 396 |
| MaeII | ACGT | 1 cut(s) | 216 |
| MalI | GATC | 3 cut(s) | 49, 156, 288 |
| MboI | GATC | 3 cut(s) | 47, 154, 286 |
| MboII | GAAGA | 3 cut(s) | 47, 174, 175 |
| MflI | RGATCY | 2 cut(s) | 47, 286 |
| MluCI | AATT | 3 cut(s) | 247, 307, 356 |
| MluI | ACGCGT | 1 cut(s) | 146 |
| MmeI | TCCRAC | 1 cut(s) | 51 |
| MnlI | CCTC | 6 cut(s) | 27, 158, 312, 499, 562, 572 |
| MroXI | GAANNNNTTC | 1 cut(s) | 148 |
| MseI | TTAA | 3 cut(s) | 192, 222, 243 |
| MspA1I | CMGCKG | 1 cut(s) | 228 |
| MspI | CCGG | 1 cut(s) | 283 |
| MspR9I | CCNGG | 2 cut(s) | 284, 528 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MvnI | CGCG | 1 cut(s) | 148 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 347, 485 |
| NciI | CCSGG | 1 cut(s) | 284 |
| NcoI | CCATGG | 1 cut(s) | 382 |
| NdeII | GATC | 3 cut(s) | 47, 154, 286 |
| NlaIII | CATG | 2 cut(s) | 386, 419 |
| PaqCI | CACCTGC | 1 cut(s) | 190 |
| PceI | AGGCCT | 1 cut(s) | 488 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 338 |
| PdmI | GAANNNNTTC | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 279 |
| PflFI | GACNNNGTC | 1 cut(s) | 509 |
| PfoI | TCCNGGA | 1 cut(s) | 282 |
| PkrI | GCNGC | 3 cut(s) | 100, 431, 525 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspPI | GGNCC | 1 cut(s) | 530 |
| PsuI | RGATCY | 2 cut(s) | 47, 286 |
| PsyI | GACNNNGTC | 1 cut(s) | 509 |
| RsaI | GTAC | 1 cut(s) | 329 |
| RsaNI | GTAC | 1 cut(s) | 328 |
| SaqAI | TTAA | 3 cut(s) | 192, 222, 243 |
| SatI | GCNGC | 3 cut(s) | 99, 430, 524 |
| Sau3AI | GATC | 3 cut(s) | 47, 154, 286 |
| Sau96I | GGNCC | 1 cut(s) | 530 |
| ScrFI | CCNGG | 2 cut(s) | 284, 528 |
| SetI | ASST | 6 cut(s) | 94, 204, 219, 371, 441, 475 |
| SfaNI | GCATC | 4 cut(s) | 27, 64, 243, 396 |
| SfcI | CTRYAG | 1 cut(s) | 391 |
| Sse9I | AATT | 3 cut(s) | 247, 307, 356 |
| SseBI | AGGCCT | 1 cut(s) | 488 |
| SsiI | CCGC | 5 cut(s) | 99, 228, 350, 524, 551 |
| StuI | AGGCCT | 1 cut(s) | 488 |
| StyD4I | CCNGG | 2 cut(s) | 282, 526 |
| StyI | CCWWGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 3 cut(s) | 234, 451, 511 |
| TaiI | ACGT | 1 cut(s) | 219 |
| TaqI | TCGA | 1 cut(s) | 513 |
| TasI | AATT | 3 cut(s) | 247, 307, 356 |
| TatI | WGTACW | 1 cut(s) | 327 |
| TauI | GCSGC | 2 cut(s) | 101, 526 |
| TfiI | GAWTC | 1 cut(s) | 279 |
| Tru1I | TTAA | 3 cut(s) | 192, 222, 243 |
| Tru9I | TTAA | 3 cut(s) | 192, 222, 243 |
| TseI | GCWGC | 1 cut(s) | 429 |
| TspDTI | ATGAA | 2 cut(s) | 221, 404 |
| Tth111I | GACNNNGTC | 1 cut(s) | 509 |
| XapI | RAATTY | 1 cut(s) | 307 |
| XmnI | GAANNNNTTC | 1 cut(s) | 148 |