Rmu_sc0003156.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003156.1
OG0000123
Physical Location & Seq
Reverse (-)
59848 .. 61116
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003156.1_g000010.1.cds

Sequence Viewer

Length: 1152 bp
atggcggcggaaggtgcagcgtcgtccctcgccttgtcggaggaggccatagtgagcctggttgggggcggggatgtgatccatgatccattcttttacctatgtgggcgtttgctaaccaagaaaccggtggttattccatcattctcggcggcgatgtccggaatatggcggctgaatgatcgggttttgatccgtgaagaagagggtgggatctttgtgttcctttttaaagagcaggaggtgaagcatcgtgttcttcatggcgggccctggtattacagtaacacgatgttgttattggctgattatgatggtgttggggcactggcagaggttcctctgcactccctggagatgtgggtggcgaggattcggttgatccatgatgtgcgccaccgagtttgggctcggcgtacgatccgcttcacgccggaggtttctgtggtccttgaattcaggtatgaaaaatgccgcggaatctgcaaggcttgtggtttcttcactcatggcggaggggagtgcgatcggaagctggtgcaggaattggttgtggaggaactggttctgccatctgaattgcagaaggaggcaggtccgccgtccaatgcctcagtggaagacccgtcgacgtcaatcttttctgcagcctggattaacaaagttggcacctgcgctgggggttctggtaccgtgcaggaggttgatgctgggaaggaagcggcggagctgaggacgggatccatttcgcatcctccgtgtttttcggcgggaacccctaatttcaaattagggttgaccgctggaccgggcttgaatatgggcttgaccaatttgaggactaatgggctggattctggacctgttgggctggcaggagatagggctttagctgttggttgttttggacacccatctaggattttgggtgtgagaaggcttcgggaggaggagtggcttgaagaaggaaagcgtctgaaactttctgatagcttagttgaagtcccagtaactgatggaaagattctcaagaagaagggcaaacctcgaggtcatcggaataagcccaagcttgtgcctacgcccacctcagtggggggtgccagggagccggctttggaggagctaaatgccttacctcaagagggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

383

Amino Acids

41.48

Weight (kDa)

7.14

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38140
fragaria_vesca FvH4_1g20041 FvH4_1g21262 FvH4_1g25072 FvH4_2g16250 FvH4_2g17190 FvH4_3g04330 FvH4_3g20250 FvH4_3g22272 FvH4_3g26421 FvH4_3g35981 FvH4_4g01621 FvH4_4g07081 FvH4_4g13902 FvH4_4g18461 FvH4_5g15851 FvH4_6g06531 FvH4_6g22500 FvH4_6g23161 FvH4_6g26861 FvH4_6g28682 FvH4_6g33163 FvH4_6g33591 FvH4_6g38140 FvH4_7g00272
malus_domestica MD05G1145500.v1.1 MD10G1144900.v1.1
prunus_persica Prupe.8G183300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0109311 RchiOBHm_Chr2g0109451 RchiOBHm_Chr2g0164071 RchiOBHm_Chr3g0469891 RchiOBHm_Chr3g0477271 RchiOBHm_Chr6g0281681
rosa_laevigata RLG00000007350 RLG00000011905 RLG00000012951 RLG00000030154
rosa_multiflora Rmu_co8029630.1_g000001 Rmu_co8038194.1_g000001 Rmu_co8114330.1_g000001 Rmu_co8138832.1_g000001 Rmu_co8166524.1_g000001 Rmu_co8169592.1_g000001 Rmu_co8214120.1_g000001 Rmu_co8224140.1_g000001 Rmu_co8242461.1_g000001 Rmu_co8314423.1_g000002 Rmu_co8333117.1_g000001 Rmu_co8348539.1_g000002 Rmu_co8348927.1_g000001 Rmu_co8416111.1_g000001 Rmu_co8444475.1_g000001 Rmu_co8503525.1_g000001 Rmu_sc0000047.1_g000017 Rmu_sc0000076.1_g000047 Rmu_sc0000116.1_g000002 Rmu_sc0000146.1_g000004 Rmu_sc0000239.1_g000065 Rmu_sc0000335.1_g000105 Rmu_sc0000424.1_g000035 Rmu_sc0000517.1_g000021 Rmu_sc0000611.1_g000003 Rmu_sc0000770.1_g000050 Rmu_sc0000808.1_g000032 Rmu_sc0000811.1_g000026 Rmu_sc0000894.1_g000054 Rmu_sc0000898.1_g000082 Rmu_sc0000898.1_g000083 Rmu_sc0001350.1_g000029 Rmu_sc0001374.1_g000062 Rmu_sc0001405.1_g000018 Rmu_sc0001474.1_g000014 Rmu_sc0001526.1_g000021 Rmu_sc0001551.1_g000029 Rmu_sc0001557.1_g000004 Rmu_sc0001650.1_g000005 Rmu_sc0001650.1_g000013 Rmu_sc0001662.1_g000001 Rmu_sc0001673.1_g000030 Rmu_sc0001701.1_g000021 Rmu_sc0001814.1_g000019 Rmu_sc0002038.1_g000007 Rmu_sc0002179.1_g000011 Rmu_sc0002285.1_g000020 Rmu_sc0002575.1_g000023 Rmu_sc0002731.1_g000001 Rmu_sc0002944.1_g000021 Rmu_sc0003023.1_g000002 Rmu_sc0003129.1_g000006 Rmu_sc0003144.1_g000013 Rmu_sc0003156.1_g000010 Rmu_sc0003369.1_g000015 Rmu_sc0003410.1_g000028 Rmu_sc0003410.1_g000029 Rmu_sc0003507.1_g000033 Rmu_sc0003548.1_g000013 Rmu_sc0003605.1_g000027 Rmu_sc0003710.1_g000010 Rmu_sc0003863.1_g000009 Rmu_sc0003909.1_g000006 Rmu_sc0003916.1_g000023 Rmu_sc0003916.1_g000024 Rmu_sc0003930.1_g000009 Rmu_sc0004030.1_g000006 Rmu_sc0004046.1_g000018 Rmu_sc0004154.1_g000010 Rmu_sc0004191.1_g000011 Rmu_sc0004205.1_g000007 Rmu_sc0004556.1_g000006 Rmu_sc0004975.1_g000008 Rmu_sc0005038.1_g000028 Rmu_sc0005083.1_g000005 Rmu_sc0005220.1_g000016 Rmu_sc0005274.1_g000011 Rmu_sc0005378.1_g000023 Rmu_sc0005385.1_g000016 Rmu_sc0005424.1_g000023 Rmu_sc0005738.1_g000009 Rmu_sc0005798.1_g000015 Rmu_sc0005834.1_g000008 Rmu_sc0006128.1_g000007 Rmu_sc0006865.1_g000015 Rmu_sc0006925.1_g000001 Rmu_sc0007005.1_g000002 Rmu_sc0007025.1_g000017 Rmu_sc0007518.1_g000004 Rmu_sc0007813.1_g000002 Rmu_sc0008730.1_g000003 Rmu_sc0008861.1_g000008 Rmu_sc0008861.1_g000009 Rmu_sc0009624.1_g000009 Rmu_sc0010439.1_g000001 Rmu_sc0010719.1_g000003 Rmu_sc0011069.1_g000001 Rmu_sc0013102.1_g000007 Rmu_sc0013803.1_g000022 Rmu_sc0013860.1_g000004 Rmu_sc0014885.1_g000001 Rmu_sc0017338.1_g000001 Rmu_sc0017964.1_g000006 Rmu_sc0019100.1_g000002 Rmu_sc0020554.1_g000001 Rmu_sc0020928.1_g000001 Rmu_sc0021886.1_g000001 Rmu_sc0022276.1_g000001 Rmu_sc0022942.1_g000001 Rmu_sc0022945.1_g000001 Rmu_sc0023180.1_g000002 Rmu_sc0024149.1_g000001 Rmu_sc0024149.1_g000002 Rmu_sc0026250.1_g000001 Rmu_sc0029882.1_g000003 Rmu_sc0035589.1_g000001 Rmu_sc0035888.1_g000003 Rmu_sc0036257.1_g000001 Rmu_sc0036258.1_g000001 Rmu_sc0040283.1_g000002 Rmu_sc0042169.1_g000001 Rmu_ssc0000126.1_g000076 Rmu_ssc0000357.1_g000017 Rmu_ssc0000372.1_g000063 Rmu_ssc0000391.1_g000030 Rmu_ssc0000432.1_g000006 Rmu_ssc0000480.1_g000008
rosa_roxburghii Rroxscaffold_1G00047150 Rroxscaffold_2G00124620 Rroxscaffold_2G00130500 Rroxscaffold_2G00146610 Rroxscaffold_3G00260760 Rroxscaffold_3G00270900 Rroxscaffold_4G00282170 Rroxscaffold_6G00418750 Rroxscaffold_7G00186930
rosa_rugosa Rorug01G0267800 Rorug02G0132500 Rorug02G0156000 Rorug02G0163300 Rorug02G0282900 Rorug02G0283000 Rorug02G0439400 Rorug02G0488800 Rorug02G0488900 Rorug02G0556100 Rorug03G0101100 Rorug03G0101200 Rorug03G0130200 Rorug03G0223700 Rorug04G0015200 Rorug04G0032400 Rorug04G0043600 Rorug04G0049700 Rorug04G0137000 Rorug04G0178300 Rorug04G0198500 Rorug05G0298400 Rorug05G0438000 Rorug05G0499300 Rorug06G0025400 Rorug06G0142400 Rorug07G0108200 Rorug07G0111200
rosa_samantha Rh1CG412100 Rh2AG574700 Rh2BG495100 Rh2CG255400 Rh2CG263700 Rh2CG548300 Rh3BG288300 Rh3DG068500 Rh5CG272200 Rh5DG249700 Rh5DG397400 Rh6AG255100 Rh6BG258500 Rh6CG257300 Rh6DG249500 Rh6DG268300 Rh6DG381800 Rh7BG282800 Rh7BG372100
rosa_wichuraiana Rw4G024160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 680
AatII GACGTC 1 cut(s) 635
AbsI CCTCGAGG 1 cut(s) 1047
Acc36I ACCTGC 2 cut(s) 584, 680
Acc65I GGTACC 1 cut(s) 689
AccB1I GGYRCC 3 cut(s) 668, 689, 1100
AccI GTMKAC 1 cut(s) 629
AccII CGCG 1 cut(s) 477
AccIII TCCGGA 1 cut(s) 161
AclWI GGATC 8 cut(s) 73, 80, 187, 221, 376, 415, 735, 748
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 632
AfaI GTAC 2 cut(s) 418, 691
AfiI CCNNNNNNNGG 7 cut(s) 64, 168, 406, 678, 837, 1095, 1145
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 5 cut(s) 455, 787, 817, 962, 1001
AjnI CCWGG 5 cut(s) 57, 272, 351, 650, 1103
AleI CACNNNNGTG 1 cut(s) 1091
AluBI AGCT 6 cut(s) 535, 730, 893, 993, 1072, 1126
AluI AGCT 6 cut(s) 535, 730, 893, 993, 1072, 1126
AlwI GGATC 8 cut(s) 73, 80, 187, 221, 376, 415, 735, 748
AlwNI CAGNNNCTG 1 cut(s) 1013
Ama87I CYCGRG 1 cut(s) 1047
Aor13HI TCCGGA 1 cut(s) 161
AoxI GGCC 2 cut(s) 45, 269
ApaI GGGCCC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 17, 647
ApoI RAATTY 1 cut(s) 455
AsiGI ACCGGT 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 564
Asp718I GGTACC 1 cut(s) 689
AspLEI GCGC 2 cut(s) 396, 677
AspS9I GGNCC 6 cut(s) 269, 270, 448, 596, 806, 860
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 1047
AvaII GGWCC 4 cut(s) 448, 596, 806, 860
BaeGI GKGCMC 2 cut(s) 273, 328
BamHI GGATCC 1 cut(s) 740
BanI GGYRCC 3 cut(s) 668, 689, 1100
BanII GRGCYC 2 cut(s) 273, 412
BbsI GAAGAC 1 cut(s) 627
BbvCI CCTCAGC 1 cut(s) 731
BbvI GCAGC 2 cut(s) 29, 659
BccI CCATC 5 cut(s) 148, 308, 580, 922, 1010
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 5 cut(s) 59, 274, 353, 652, 1105
BcnI CCSGG 1 cut(s) 810
BfaI CTAG 1 cut(s) 918
BfmI CTRYAG 1 cut(s) 645
BfuAI ACCTGC 2 cut(s) 584, 680
BisI GCNGC 7 cut(s) 6, 18, 153, 173, 475, 648, 723
BlsI GCNGC 7 cut(s) 7, 19, 154, 174, 476, 649, 724
Bme1390I CCNGG 6 cut(s) 59, 274, 353, 652, 810, 1105
Bme18I GGWCC 4 cut(s) 448, 596, 806, 860
BmeT110I CYCGRG 1 cut(s) 1047
BmgT120I GGNCC 6 cut(s) 269, 270, 448, 596, 806, 860
BmiI GGNNCC 8 cut(s) 271, 339, 670, 691, 742, 775, 1102, 1110
BmrFI CCNGG 6 cut(s) 59, 274, 353, 652, 810, 1105
BmrI ACTGGG 1 cut(s) 1001
BmsI GCATC 3 cut(s) 259, 697, 760
BmuI ACTGGG 1 cut(s) 1001
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 731
BpuEI CTTGAG 2 cut(s) 1013, 1125
BpuMI CCSGG 1 cut(s) 810
BsaHI GRCGYC 1 cut(s) 632
BsaJI CCNNGG 4 cut(s) 272, 351, 475, 1104
BsaWI WCCGGW 2 cut(s) 127, 161
BsaXI ACNNNNNCTCC 2 cut(s) 938, 968
Bsc4I CCNNNNNNNGG 7 cut(s) 64, 168, 406, 678, 837, 1095, 1145
Bse118I RCCGGY 2 cut(s) 127, 1111
Bse1I ACTGG 3 cut(s) 333, 567, 1007
BseAI TCCGGA 1 cut(s) 161
BseBI CCWGG 5 cut(s) 59, 274, 353, 652, 1105
BseDI CCNNGG 4 cut(s) 272, 351, 475, 1104
BseGI GGATG 2 cut(s) 79, 751
BseLI CCNNNNNNNGG 7 cut(s) 64, 168, 406, 678, 837, 1095, 1145
BseMII CTCAG 3 cut(s) 627, 722, 1104
BseNI ACTGG 3 cut(s) 333, 567, 1007
BseRI GAGGAG 4 cut(s) 56, 962, 965, 1136
BseSI GKGCMC 2 cut(s) 273, 328
BseXI GCAGC 2 cut(s) 29, 659
BseYI CCCAGC 2 cut(s) 677, 710
BsgI GTGCAG 4 cut(s) 36, 329, 560, 716
Bsh1236I CGCG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 2 cut(s) 47, 271
BshNI GGYRCC 3 cut(s) 668, 689, 1100
BshTI ACCGGT 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 1047
BsiSI CCGG 5 cut(s) 128, 162, 434, 809, 1112
BsiWI CGTACG 1 cut(s) 416
BslFI GGGAC 2 cut(s) 10, 989
BslI CCNNNNNNNGG 7 cut(s) 64, 168, 406, 678, 837, 1095, 1145
BsmFI GGGAC 2 cut(s) 10, 989
BsnI GGCC 2 cut(s) 47, 271
BsoBI CYCGRG 1 cut(s) 1047
Bsp120I GGGCCC 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 273, 328, 412
Bsp13I TCCGGA 1 cut(s) 161
Bsp143I GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
BspANI GGCC 2 cut(s) 47, 271
BspCNI CTCAG 3 cut(s) 626, 723, 1103
BspEI TCCGGA 1 cut(s) 161
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 8 cut(s) 271, 339, 670, 691, 742, 775, 1102, 1110
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 2 cut(s) 584, 680
BspPI GGATC 8 cut(s) 73, 80, 187, 221, 376, 415, 735, 748
BspT107I GGYRCC 3 cut(s) 668, 689, 1100
BsrFI RCCGGY 2 cut(s) 127, 1111
BsrI ACTGG 3 cut(s) 333, 567, 1007
BssAI RCCGGY 2 cut(s) 127, 1111
BssECI CCNNGG 4 cut(s) 272, 351, 475, 1104
BssMI GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
BssNI GRCGYC 1 cut(s) 632
Bst2UI CCWGG 5 cut(s) 59, 274, 353, 652, 1105
Bst4CI ACNGT 2 cut(s) 284, 694
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 269, 873, 1113
BstDEI CTNAG 4 cut(s) 613, 731, 994, 1090
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 79, 751
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 2 cut(s) 396, 677
BstKTI GATC 9 cut(s) 81, 88, 184, 195, 216, 384, 423, 529, 743
BstMBI GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
BstMCI CGRYCG 1 cut(s) 529
BstMWI GCNNNNNNNGC 2 cut(s) 14, 483
BstNI CCWGG 5 cut(s) 59, 274, 353, 652, 1105
BstSCI CCNGG 6 cut(s) 57, 272, 351, 650, 808, 1103
BstSFI CTRYAG 1 cut(s) 645
BstSLI GKGCMC 2 cut(s) 273, 328
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 2 cut(s) 29, 659
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 2 cut(s) 213, 740
BstXI CCANNNNNNTGG 1 cut(s) 1093
BstYI RGATCY 2 cut(s) 213, 740
BsuRI GGCC 2 cut(s) 47, 271
BtgI CCRYGG 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 79, 751
BtsIMutI CAGTG 3 cut(s) 326, 621, 1098
BveI ACCTGC 2 cut(s) 584, 680
Cac8I GCNNGC 3 cut(s) 269, 873, 1113
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 2 cut(s) 396, 677
Cfr10I RCCGGY 2 cut(s) 127, 1111
Cfr13I GGNCC 6 cut(s) 269, 270, 448, 596, 806, 860
Cfr42I CCGCGG 1 cut(s) 478
CseI GACGC 2 cut(s) 9, 962
Csp6I GTAC 2 cut(s) 417, 690
CspAI ACCGGT 1 cut(s) 127
CspCI CAANNNNNGTGG 4 cut(s) 386, 421, 475, 510
CviAII CATG 4 cut(s) 83, 263, 386, 509
CviQI GTAC 2 cut(s) 417, 690
DdeI CTNAG 4 cut(s) 613, 731, 994, 1090
DpnI GATC 9 cut(s) 80, 87, 183, 194, 215, 383, 422, 528, 742
DpnII GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
DraI TTTAAA 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 4 cut(s) 23, 528, 588, 740
Eco24I GRGCYC 2 cut(s) 273, 412
Eco47I GGWCC 4 cut(s) 448, 596, 806, 860
Eco88I CYCGRG 1 cut(s) 1047
EcoO109I RGGNCCY 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 5 cut(s) 57, 272, 351, 650, 1103
EcoT38I GRGCYC 2 cut(s) 273, 412
FaeI CATG 4 cut(s) 86, 266, 389, 512
FaqI GGGAC 2 cut(s) 10, 989
FatI CATG 4 cut(s) 82, 262, 385, 508
FauI CCCGC 3 cut(s) 62, 260, 763
FblI GTMKAC 1 cut(s) 629
Fnu4HI GCNGC 7 cut(s) 6, 18, 153, 173, 475, 648, 723
FokI GGATG 2 cut(s) 86, 738
FriOI GRGCYC 2 cut(s) 273, 412
Fsp4HI GCNGC 7 cut(s) 6, 18, 153, 173, 475, 648, 723
FspBI CTAG 1 cut(s) 918
GlaI GCGC 2 cut(s) 395, 676
GluI GCNGC 7 cut(s) 6, 18, 153, 173, 475, 648, 723
GsaI CCCAGC 2 cut(s) 681, 714
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 2 cut(s) 47, 271
HapII CCGG 5 cut(s) 128, 162, 434, 809, 1112
HgaI GACGC 2 cut(s) 9, 962
HhaI GCGC 2 cut(s) 396, 677
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 4 cut(s) 86, 266, 389, 512
Hin6I GCGC 2 cut(s) 394, 675
HinP1I GCGC 2 cut(s) 394, 675
HincII GTYRAC 2 cut(s) 630, 798
HindII GTYRAC 2 cut(s) 630, 798
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 4 cut(s) 373, 480, 854, 1024
HpaII CCGG 5 cut(s) 128, 162, 434, 809, 1112
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 630, 798
Hpy188I TCNGA 6 cut(s) 40, 531, 577, 978, 988, 1059
Hpy188III TCNNGA 5 cut(s) 162, 858, 944, 1030, 1142
Hpy8I GTNNAC 2 cut(s) 630, 798
Hpy99I CGWCG 3 cut(s) 25, 631, 634
HpyAV CCTTC 6 cut(s) 5, 580, 709, 930, 959, 1030
HpyCH4III ACNGT 2 cut(s) 284, 694
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 7 cut(s) 17, 346, 486, 541, 583, 647, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 483
HpyF3I CTNAG 4 cut(s) 613, 731, 994, 1090
HpySE526I ACGT 1 cut(s) 632
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 4 cut(s) 86, 266, 389, 512
HspAI GCGC 2 cut(s) 394, 675
Kpn2I TCCGGA 1 cut(s) 161
KpnI GGTACC 1 cut(s) 693
KroI GCCGGC 1 cut(s) 1111
KroNI GCCGGC 1 cut(s) 1113
KspI CCGCGG 1 cut(s) 478
Kzo9I GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
LmnI GCTCC 3 cut(s) 727, 1108, 1123
Lsp1109I GCAGC 2 cut(s) 29, 659
LweI GCATC 3 cut(s) 259, 697, 760
MaeI CTAG 1 cut(s) 918
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 2 cut(s) 284, 1009
MalI GATC 9 cut(s) 80, 87, 183, 194, 215, 383, 422, 528, 742
MboI GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
MboII GAAGA 7 cut(s) 212, 215, 251, 493, 632, 974, 1045
MflI RGATCY 2 cut(s) 213, 740
MhlI GDGCHC 3 cut(s) 273, 328, 412
MluCI AATT 6 cut(s) 455, 545, 578, 781, 788, 832
MmeI TCCRAC 1 cut(s) 18
MroI TCCGGA 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 1111
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 2 cut(s) 231, 657
MslI CAYNNNNRTG 1 cut(s) 1091
MspA1I CMGCKG 2 cut(s) 477, 803
MspI CCGG 5 cut(s) 128, 162, 434, 809, 1112
MspR9I CCNGG 6 cut(s) 59, 274, 353, 652, 810, 1105
MvaI CCWGG 5 cut(s) 59, 274, 353, 652, 1105
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 14, 483
NaeI GCCGGC 1 cut(s) 1113
NciI CCSGG 1 cut(s) 810
NdeII GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
NgoMIV GCCGGC 1 cut(s) 1111
NlaIII CATG 4 cut(s) 86, 266, 389, 512
NlaIV GGNNCC 8 cut(s) 271, 339, 670, 691, 742, 775, 1102, 1110
NmeAIII GCCGAG 2 cut(s) 128, 391
OliI CACNNNNGTG 1 cut(s) 1091
PaeR7I CTCGAG 1 cut(s) 1047
PaqCI CACCTGC 1 cut(s) 680
PcsI WCGNNNNNNNCGW 1 cut(s) 755
PdiI GCCGGC 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 4 cut(s) 373, 480, 854, 1024
Pfl23II CGTACG 1 cut(s) 416
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 7 cut(s) 7, 19, 154, 174, 476, 649, 724
Ple19I CGATCG 1 cut(s) 529
Psp6I CCWGG 5 cut(s) 57, 272, 351, 650, 1103
PspFI CCCAGC 2 cut(s) 677, 710
PspGI CCWGG 5 cut(s) 57, 272, 351, 650, 1103
PspLI CGTACG 1 cut(s) 416
PspN4I GGNNCC 8 cut(s) 271, 339, 670, 691, 742, 775, 1102, 1110
PspOMI GGGCCC 1 cut(s) 269
PspPI GGNCC 6 cut(s) 269, 270, 448, 596, 806, 860
PspXI VCTCGAGB 1 cut(s) 1047
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 2 cut(s) 213, 740
PvuI CGATCG 1 cut(s) 529
RsaI GTAC 2 cut(s) 418, 691
RsaNI GTAC 2 cut(s) 417, 690
RseI CAYNNNNRTG 1 cut(s) 1091
SacII CCGCGG 1 cut(s) 478
SalI GTCGAC 1 cut(s) 628
SaqAI TTAA 2 cut(s) 231, 657
SatI GCNGC 7 cut(s) 6, 18, 153, 173, 475, 648, 723
Sau3AI GATC 9 cut(s) 78, 85, 181, 192, 213, 381, 420, 526, 740
Sau96I GGNCC 6 cut(s) 269, 270, 448, 596, 806, 860
ScrFI CCNGG 6 cut(s) 59, 274, 353, 652, 810, 1105
SduI GDGCHC 3 cut(s) 273, 328, 412
SfaNI GCATC 3 cut(s) 259, 697, 760
SfcI CTRYAG 1 cut(s) 645
Sfr274I CTCGAG 1 cut(s) 1047
Sfr303I CCGCGG 1 cut(s) 478
SgrBI CCGCGG 1 cut(s) 478
SgrDI CGTCGACG 1 cut(s) 628
SinI GGWCC 4 cut(s) 448, 596, 806, 860
SlaI CTCGAG 1 cut(s) 1047
SmiMI CAYNNNNRTG 1 cut(s) 1091
SmlI CTYRAG 3 cut(s) 1028, 1047, 1140
SmoI CTYRAG 3 cut(s) 1028, 1047, 1140
Sse9I AATT 6 cut(s) 455, 545, 578, 781, 788, 832
SspMI CTAG 1 cut(s) 918
StyD4I CCNGG 6 cut(s) 57, 272, 351, 650, 808, 1103
TaaI ACNGT 2 cut(s) 284, 694
TaiI ACGT 1 cut(s) 635
TaqI TCGA 2 cut(s) 629, 1048
TasI AATT 6 cut(s) 455, 545, 578, 781, 788, 832
TauI GCSGC 5 cut(s) 8, 155, 175, 477, 725
TfiI GAWTC 4 cut(s) 373, 480, 854, 1024
Tru1I TTAA 2 cut(s) 231, 657
Tru9I TTAA 2 cut(s) 231, 657
TscAI CASTG 3 cut(s) 333, 621, 1098
TseI GCWGC 2 cut(s) 17, 647
TspDTI ATGAA 2 cut(s) 251, 480
TspGWI ACGGA 2 cut(s) 185, 747
TspRI CASTG 3 cut(s) 333, 621, 1098
VpaK11BI GGWCC 4 cut(s) 448, 596, 806, 860
XapI RAATTY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 3 cut(s) 55, 127, 613
XhoI CTCGAG 1 cut(s) 1047
XmiI GTMKAC 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 1 cut(s) 918
ZraI GACGTC 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.